Wall clock time and date at job start Mon Mar 30 2020 03:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40469 * 120.20768 * 2 1 4 4 C 1.34930 * 120.43159 * 180.02562 * 3 2 1 5 5 N 1.36536 * 120.66002 * 0.02562 * 4 3 2 6 6 N 1.40050 * 132.43212 * 180.02562 * 5 4 3 7 7 C 1.31476 * 108.91284 * 179.97438 * 6 5 4 8 8 C 1.50702 * 125.49447 * 179.97438 * 7 6 5 9 9 H 1.09004 * 109.47253 * 25.02467 * 8 7 6 10 10 C 1.52999 * 109.47439 * 145.02659 * 8 7 6 11 11 C 1.50697 * 109.47102 * 265.02581 * 8 7 6 12 12 H 1.08006 * 120.00373 * 359.97438 * 11 8 7 13 13 C 1.37883 * 120.00171 * 180.02562 * 11 8 7 14 14 N 1.31514 * 119.99581 * 359.97438 * 13 11 8 15 15 Si 1.86802 * 120.00151 * 179.97438 * 13 11 8 16 16 H 1.48503 * 109.46841 * 59.99974 * 15 13 11 17 17 H 1.48498 * 109.47117 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47099 * 299.99738 * 15 13 11 19 19 C 1.38552 * 109.01178 * 359.77499 * 7 6 5 20 20 C 1.37130 * 120.12309 * 359.97438 * 5 4 3 21 21 C 1.36066 * 120.20115 * 180.02562 * 2 1 3 22 22 H 1.09003 * 109.46468 * 269.97728 * 1 2 3 23 23 H 1.09001 * 109.46756 * 29.97355 * 1 2 3 24 24 H 1.09000 * 109.47113 * 149.97719 * 1 2 3 25 25 H 1.08001 * 119.78570 * 0.02562 * 3 2 1 26 26 H 1.08004 * 119.66915 * 180.02562 * 4 3 2 27 27 H 1.08995 * 109.47420 * 180.02562 * 10 8 7 28 28 H 1.09004 * 109.46661 * 299.99977 * 10 8 7 29 29 H 1.09004 * 109.47055 * 59.99687 * 10 8 7 30 30 H 0.97002 * 119.99581 * 180.02562 * 14 13 11 31 31 H 1.07993 * 126.21497 * 180.27323 * 19 7 6 32 32 H 1.07998 * 120.38872 * 359.95705 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2138 1.2139 0.0000 4 6 3.5631 1.2192 -0.0005 5 7 4.2639 0.0474 -0.0016 6 7 5.6361 -0.2329 -0.0018 7 6 5.8046 -1.5368 -0.0025 8 6 7.1336 -2.2473 -0.0035 9 1 7.8933 -1.5976 0.4311 10 6 7.0266 -3.5305 0.8229 11 6 7.5177 -2.5922 -1.4192 12 1 6.8646 -2.3242 -2.2366 13 6 8.7025 -3.2510 -1.6712 14 7 9.4976 -3.5779 -0.6758 15 14 9.1784 -3.6792 -3.4261 16 1 9.2826 -2.4339 -4.2285 17 1 10.4880 -4.3792 -3.4271 18 1 8.1431 -4.5642 -4.0177 19 6 4.5633 -2.1524 0.0025 20 6 3.5992 -1.1520 -0.0016 21 6 2.1915 -1.1760 -0.0005 22 1 -0.3632 -0.0004 1.0277 23 1 -0.3633 0.8902 -0.5134 24 1 -0.3633 -0.8898 -0.5142 25 1 1.6737 2.1492 0.0004 26 1 4.0940 2.1597 -0.0001 27 1 7.9879 -4.0442 0.8225 28 1 6.7488 -3.2810 1.8470 29 1 6.2669 -4.1803 0.3883 30 1 10.3313 -4.0410 -0.8531 31 1 4.3788 -3.2164 0.0074 32 1 1.6612 -2.1168 -0.0002 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260478471.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:05 Heat of formation + Delta-G solvation = 89.431817 kcal Electronic energy + Delta-G solvation = -15234.728017 eV Core-core repulsion = 12775.775300 eV Total energy + Delta-G solvation = -2458.952716 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.38893 -37.39091 -34.43989 -32.89379 -31.10547 -30.22139 -28.11600 -26.52223 -25.10073 -23.19328 -21.94223 -21.01700 -18.94440 -16.99612 -16.24094 -15.97714 -15.01669 -14.96230 -14.59236 -14.23019 -13.47975 -13.35957 -12.78536 -12.54890 -12.44706 -11.72633 -11.48038 -11.36562 -11.06635 -10.88567 -10.65021 -10.41593 -10.20955 -9.95604 -9.88694 -9.63046 -9.14070 -8.37337 -8.30489 -7.01446 -6.00494 -4.06691 1.10974 1.55718 2.87239 3.34515 3.37872 3.40137 3.53218 3.79412 4.46285 4.63047 4.72574 4.99588 5.16028 5.30437 5.32813 5.46968 5.51118 5.68290 5.91048 6.03093 6.08095 6.37512 6.52142 6.58505 6.78564 6.88031 7.01507 7.14346 7.40316 7.52023 7.68728 7.85542 8.07734 8.34499 8.46891 8.93431 9.56840 11.05708 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.043525 B = 0.005978 C = 0.005882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.146772 B = 4682.720766 C = 4759.423771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.067 4.067 3 C -0.187 4.187 4 C 0.125 3.875 5 N -0.291 5.291 6 N -0.329 5.329 7 C 0.158 3.842 8 C 0.109 3.891 9 H 0.045 0.955 10 C -0.130 4.130 11 C -0.503 4.503 12 H 0.055 0.945 13 C 0.064 3.936 14 N -0.890 5.890 15 Si 0.898 3.102 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.276 1.276 19 C -0.271 4.271 20 C 0.085 3.915 21 C -0.116 4.116 22 H 0.071 0.929 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.144 0.856 26 H 0.160 0.840 27 H 0.090 0.910 28 H 0.011 0.989 29 H 0.033 0.967 30 H 0.262 0.738 31 H 0.149 0.851 32 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.405 5.868 2.143 16.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.072 4.072 3 C -0.210 4.210 4 C -0.001 4.001 5 N -0.057 5.057 6 N -0.153 5.153 7 C 0.000 4.000 8 C 0.089 3.911 9 H 0.063 0.937 10 C -0.189 4.189 11 C -0.542 4.542 12 H 0.074 0.926 13 C -0.137 4.137 14 N -0.528 5.528 15 Si 0.725 3.275 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.202 1.202 19 C -0.300 4.300 20 C -0.031 4.031 21 C -0.136 4.136 22 H 0.090 0.910 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.162 0.838 26 H 0.177 0.823 27 H 0.109 0.891 28 H 0.030 0.970 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.167 0.833 32 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -14.503 6.890 2.182 16.204 hybrid contribution -0.152 -0.909 -1.003 1.363 sum -14.655 5.980 1.179 15.872 Atomic orbital electron populations 1.20732 0.90519 1.02874 1.02371 1.19704 0.96363 0.92518 0.98604 1.20484 0.91939 0.98860 1.09705 1.21349 0.91797 0.88768 0.98235 1.46454 1.06861 1.04715 1.47681 1.77991 0.86510 1.17479 1.33288 1.23327 0.98316 0.89422 0.88889 1.17480 0.84512 0.91955 0.97179 0.93728 1.21772 1.03101 0.98828 0.95167 1.20875 1.04855 1.37492 0.91021 0.92632 1.24904 0.96021 0.95539 0.97283 1.69872 1.11832 1.40559 1.30570 0.86559 0.77621 0.78594 0.84679 1.20284 1.21164 1.20185 1.21328 0.90203 0.98943 1.19526 1.19582 0.92958 0.87169 1.03425 1.20353 0.90274 0.98806 1.04159 0.91017 0.91409 0.91358 0.83816 0.82269 0.89144 0.96979 0.94790 0.92759 0.83309 0.84409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.02 36.01 0.36 -0.53 16 2 C -0.07 -0.82 5.88 -104.56 -0.62 -1.43 16 3 C -0.19 -2.24 9.67 -39.92 -0.39 -2.63 16 4 C 0.13 1.87 11.19 -16.63 -0.19 1.68 16 5 N -0.29 -5.78 3.90 -10.71 -0.04 -5.82 16 6 N -0.33 -7.85 12.66 33.51 0.42 -7.43 16 7 C 0.16 3.86 6.02 -82.63 -0.50 3.36 16 8 C 0.11 2.90 2.76 -92.92 -0.26 2.65 16 9 H 0.04 1.28 8.14 -51.93 -0.42 0.86 16 10 C -0.13 -3.19 8.54 37.16 0.32 -2.87 16 11 C -0.50 -14.30 8.55 -34.44 -0.29 -14.59 16 12 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 13 C 0.06 1.79 5.30 -17.82 -0.09 1.70 16 14 N -0.89 -25.40 11.32 55.43 0.63 -24.77 16 15 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 C -0.27 -5.85 10.05 -39.21 -0.39 -6.25 16 20 C 0.09 1.64 6.81 -84.27 -0.57 1.07 16 21 C -0.12 -1.71 9.75 -39.40 -0.38 -2.09 16 22 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.07 0.47 8.10 -51.93 -0.42 0.04 16 24 H 0.07 0.51 8.08 -51.93 -0.42 0.10 16 25 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 26 H 0.16 1.94 8.06 -52.48 -0.42 1.52 16 27 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 28 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.03 0.78 7.25 -51.93 -0.38 0.40 16 30 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 31 H 0.15 2.96 7.37 -52.49 -0.39 2.58 16 32 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 274.80 15.07 4.14 4.14 Total: -1.00 -31.65 274.80 -6.87 -38.52 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: -4.00 Total: -1.30 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: -3.00 Total: -19.95 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: 1.01 Total: -38.02 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.65 -6.87 -38.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260478471.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.951 kcal (2) G-P(sol) polarization free energy of solvation -31.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds