Wall clock time and date at job start Mon Mar 30 2020 03:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.40476 * 120.20815 * 2 1 4 4 C 1.34931 * 120.43257 * 179.97438 * 3 2 1 5 5 N 1.36540 * 120.66000 * 359.97438 * 4 3 2 6 6 N 1.40044 * 132.43155 * 179.97438 * 5 4 3 7 7 C 1.31482 * 108.91428 * 179.97438 * 6 5 4 8 8 C 1.50697 * 125.49896 * 180.02562 * 7 6 5 9 9 H 1.08998 * 109.46862 * 335.03155 * 8 7 6 10 10 C 1.52997 * 109.47466 * 215.02600 * 8 7 6 11 11 C 1.50706 * 109.47178 * 95.02214 * 8 7 6 12 12 H 1.07998 * 119.99629 * 0.02562 * 11 8 7 13 13 C 1.37875 * 119.99955 * 179.97438 * 11 8 7 14 14 N 1.31510 * 120.00308 * 0.02562 * 13 11 8 15 15 Si 1.86800 * 119.99908 * 180.02562 * 13 11 8 16 16 H 1.48500 * 109.47233 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46997 * 120.00173 * 15 13 11 18 18 H 1.48501 * 109.47364 * 240.00497 * 15 13 11 19 19 C 1.38550 * 109.00609 * 0.26597 * 7 6 5 20 20 C 1.37127 * 120.12024 * 359.97438 * 5 4 3 21 21 C 1.36070 * 120.20545 * 179.97438 * 2 1 3 22 22 H 1.08999 * 109.46876 * 90.00201 * 1 2 3 23 23 H 1.08994 * 109.47025 * 210.00119 * 1 2 3 24 24 H 1.08996 * 109.47074 * 330.00262 * 1 2 3 25 25 H 1.07998 * 119.78181 * 359.97438 * 3 2 1 26 26 H 1.08004 * 119.67237 * 179.97438 * 4 3 2 27 27 H 1.09002 * 109.47153 * 59.99773 * 10 8 7 28 28 H 1.09001 * 109.46832 * 299.99964 * 10 8 7 29 29 H 1.09004 * 109.47261 * 179.97438 * 10 8 7 30 30 H 0.96998 * 120.00365 * 179.97438 * 14 13 11 31 31 H 1.08001 * 126.21748 * 179.74119 * 19 7 6 32 32 H 1.08000 * 120.38515 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2138 1.2140 0.0000 4 6 3.5631 1.2193 0.0005 5 7 4.2640 0.0475 0.0016 6 7 5.6361 -0.2328 0.0018 7 6 5.8047 -1.5368 0.0036 8 6 7.1336 -2.2473 0.0050 9 1 7.8934 -1.5976 -0.4294 10 6 7.0268 -3.5306 -0.8213 11 6 7.5175 -2.5921 1.4210 12 1 6.8642 -2.3239 2.2380 13 6 8.7021 -3.2508 1.6731 14 7 9.4974 -3.5779 0.6781 15 14 9.1776 -3.6788 3.4282 16 1 8.1199 -3.2055 4.3570 17 1 9.3255 -5.1508 3.5560 18 1 10.4650 -3.0206 3.7668 19 6 4.5634 -2.1523 -0.0016 20 6 3.5993 -1.1519 0.0027 21 6 2.1916 -1.1760 0.0005 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8899 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.6736 2.1492 -0.0004 26 1 4.0941 2.1598 0.0001 27 1 6.7492 -3.2812 -1.8455 28 1 6.2670 -4.1802 -0.3868 29 1 7.9882 -4.0443 -0.8207 30 1 10.3310 -4.0410 0.8555 31 1 4.3787 -3.2164 -0.0056 32 1 1.6612 -2.1168 0.0014 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260478477.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:06 Heat of formation + Delta-G solvation = 89.338510 kcal Electronic energy + Delta-G solvation = -15235.033819 eV Core-core repulsion = 12776.077056 eV Total energy + Delta-G solvation = -2458.956762 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.38913 -37.39068 -34.44207 -32.89467 -31.10675 -30.22261 -28.11655 -26.52227 -25.10561 -23.19414 -21.94378 -21.01745 -18.94649 -16.99632 -16.24607 -15.97899 -15.01766 -14.96405 -14.58844 -14.22905 -13.48049 -13.35797 -12.79334 -12.54910 -12.44783 -11.72643 -11.48843 -11.36724 -11.06632 -10.92152 -10.61366 -10.40023 -10.21546 -9.95517 -9.89486 -9.63079 -9.12756 -8.38023 -8.30433 -7.01459 -6.00979 -4.07030 1.10962 1.55709 2.87228 3.31319 3.38319 3.42807 3.53421 3.79406 4.46140 4.63034 4.72587 4.99582 5.16026 5.30181 5.32776 5.46984 5.51107 5.68308 5.91048 6.03063 6.08082 6.37470 6.52072 6.58487 6.78496 6.87869 7.01398 7.14233 7.40256 7.52001 7.68817 7.85317 8.07671 8.34228 8.46818 8.93755 9.56703 11.05313 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.043523 B = 0.005978 C = 0.005882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.182502 B = 4682.712183 C = 4759.418708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.067 4.067 3 C -0.187 4.187 4 C 0.125 3.875 5 N -0.291 5.291 6 N -0.330 5.330 7 C 0.158 3.842 8 C 0.108 3.892 9 H 0.045 0.955 10 C -0.130 4.130 11 C -0.502 4.502 12 H 0.057 0.943 13 C 0.063 3.937 14 N -0.890 5.890 15 Si 0.897 3.103 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.283 1.283 19 C -0.271 4.271 20 C 0.085 3.915 21 C -0.116 4.116 22 H 0.071 0.929 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.144 0.856 26 H 0.160 0.840 27 H 0.011 0.989 28 H 0.033 0.967 29 H 0.090 0.910 30 H 0.261 0.739 31 H 0.149 0.851 32 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.431 5.886 -2.142 16.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.072 4.072 3 C -0.210 4.210 4 C -0.002 4.002 5 N -0.057 5.057 6 N -0.153 5.153 7 C 0.001 3.999 8 C 0.088 3.912 9 H 0.063 0.937 10 C -0.189 4.189 11 C -0.541 4.541 12 H 0.075 0.925 13 C -0.138 4.138 14 N -0.528 5.528 15 Si 0.725 3.275 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.300 4.300 20 C -0.031 4.031 21 C -0.136 4.136 22 H 0.090 0.910 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.162 0.838 26 H 0.177 0.823 27 H 0.030 0.970 28 H 0.052 0.948 29 H 0.109 0.891 30 H 0.071 0.929 31 H 0.167 0.833 32 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -14.538 6.912 -2.178 16.244 hybrid contribution -0.132 -0.919 0.990 1.357 sum -14.669 5.992 -1.188 15.891 Atomic orbital electron populations 1.20729 0.90519 1.02875 1.02372 1.19706 0.96361 0.92517 0.98604 1.20485 0.91938 0.98860 1.09698 1.21350 0.91797 0.88767 0.98240 1.46452 1.06859 1.04717 1.47677 1.77989 0.86515 1.17478 1.33296 1.23324 0.98312 0.89422 0.88889 1.17492 0.84527 0.91968 0.97220 0.93717 1.21771 1.03103 0.98820 0.95172 1.20953 1.04809 1.37267 0.91047 0.92518 1.24905 0.96040 0.95566 0.97290 1.69887 1.11807 1.40680 1.30460 0.86446 0.78402 0.78023 0.84634 1.19819 1.20886 1.20940 1.21329 0.90204 0.98944 1.19526 1.19581 0.92959 0.87170 1.03425 1.20353 0.90273 0.98806 1.04156 0.91017 0.91359 0.91408 0.83816 0.82268 0.96973 0.94788 0.89143 0.92870 0.83308 0.84408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.02 36.01 0.36 -0.53 16 2 C -0.07 -0.82 5.88 -104.56 -0.62 -1.43 16 3 C -0.19 -2.24 9.67 -39.91 -0.39 -2.63 16 4 C 0.13 1.87 11.19 -16.63 -0.19 1.68 16 5 N -0.29 -5.78 3.90 -10.71 -0.04 -5.82 16 6 N -0.33 -7.85 12.66 33.51 0.42 -7.43 16 7 C 0.16 3.86 6.02 -82.63 -0.50 3.36 16 8 C 0.11 2.88 2.76 -92.92 -0.26 2.62 16 9 H 0.04 1.29 8.14 -51.93 -0.42 0.86 16 10 C -0.13 -3.19 8.54 37.16 0.32 -2.87 16 11 C -0.50 -14.25 8.55 -34.44 -0.29 -14.54 16 12 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 13 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 14 N -0.89 -25.39 11.32 55.43 0.63 -24.76 16 15 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 16 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 19 C -0.27 -5.85 10.05 -39.21 -0.39 -6.25 16 20 C 0.09 1.64 6.81 -84.28 -0.57 1.07 16 21 C -0.12 -1.71 9.75 -39.40 -0.38 -2.09 16 22 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 24 H 0.07 0.47 8.10 -51.93 -0.42 0.04 16 25 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 26 H 0.16 1.94 8.06 -52.48 -0.42 1.52 16 27 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.03 0.78 7.25 -51.93 -0.38 0.40 16 29 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 30 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.15 2.96 7.37 -52.49 -0.39 2.57 16 32 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 274.80 15.07 4.14 4.14 Total: -1.00 -31.71 274.80 -6.87 -38.58 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -4.00 Total: -1.37 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: -3.00 Total: -19.93 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 1.01 Total: -38.01 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.71 -6.87 -38.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260478477.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.914 kcal (2) G-P(sol) polarization free energy of solvation -31.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds