Wall clock time and date at job start Mon Mar 30 2020 03:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.40476 * 120.20815 * 2 1 4 4 C 1.34931 * 120.43257 * 179.97438 * 3 2 1 5 5 N 1.36540 * 120.66000 * 359.97438 * 4 3 2 6 6 N 1.40044 * 132.43155 * 179.97438 * 5 4 3 7 7 C 1.31482 * 108.91428 * 179.97438 * 6 5 4 8 8 C 1.50697 * 125.49896 * 180.02562 * 7 6 5 9 9 H 1.08998 * 109.46862 * 335.03155 * 8 7 6 10 10 C 1.52997 * 109.47466 * 215.02600 * 8 7 6 11 11 C 1.50706 * 109.47178 * 95.02214 * 8 7 6 12 12 H 1.07998 * 119.99629 * 0.02562 * 11 8 7 13 13 C 1.37875 * 119.99955 * 179.97438 * 11 8 7 14 14 N 1.31510 * 120.00308 * 0.02562 * 13 11 8 15 15 Si 1.86800 * 119.99908 * 180.02562 * 13 11 8 16 16 H 1.48500 * 109.47233 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46997 * 120.00173 * 15 13 11 18 18 H 1.48501 * 109.47364 * 240.00497 * 15 13 11 19 19 C 1.38550 * 109.00609 * 0.26597 * 7 6 5 20 20 C 1.37127 * 120.12024 * 359.97438 * 5 4 3 21 21 C 1.36070 * 120.20545 * 179.97438 * 2 1 3 22 22 H 1.08999 * 109.46876 * 90.00201 * 1 2 3 23 23 H 1.08994 * 109.47025 * 210.00119 * 1 2 3 24 24 H 1.08996 * 109.47074 * 330.00262 * 1 2 3 25 25 H 1.07998 * 119.78181 * 359.97438 * 3 2 1 26 26 H 1.08004 * 119.67237 * 179.97438 * 4 3 2 27 27 H 1.09002 * 109.47153 * 59.99773 * 10 8 7 28 28 H 1.09001 * 109.46832 * 299.99964 * 10 8 7 29 29 H 1.09004 * 109.47261 * 179.97438 * 10 8 7 30 30 H 0.96998 * 120.00365 * 179.97438 * 14 13 11 31 31 H 1.08001 * 126.21748 * 179.74119 * 19 7 6 32 32 H 1.08000 * 120.38515 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2138 1.2140 0.0000 4 6 3.5631 1.2193 0.0005 5 7 4.2640 0.0475 0.0016 6 7 5.6361 -0.2328 0.0018 7 6 5.8047 -1.5368 0.0036 8 6 7.1336 -2.2473 0.0050 9 1 7.8934 -1.5976 -0.4294 10 6 7.0268 -3.5306 -0.8213 11 6 7.5175 -2.5921 1.4210 12 1 6.8642 -2.3239 2.2380 13 6 8.7021 -3.2508 1.6731 14 7 9.4974 -3.5779 0.6781 15 14 9.1776 -3.6788 3.4282 16 1 8.1199 -3.2055 4.3570 17 1 9.3255 -5.1508 3.5560 18 1 10.4650 -3.0206 3.7668 19 6 4.5634 -2.1523 -0.0016 20 6 3.5993 -1.1519 0.0027 21 6 2.1916 -1.1760 0.0005 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8899 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.6736 2.1492 -0.0004 26 1 4.0941 2.1598 0.0001 27 1 6.7492 -3.2812 -1.8455 28 1 6.2670 -4.1802 -0.3868 29 1 7.9882 -4.0443 -0.8207 30 1 10.3310 -4.0410 0.8555 31 1 4.3787 -3.2164 -0.0056 32 1 1.6612 -2.1168 0.0014 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260478477.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:06 Heat of formation + Delta-G solvation = 70.268355 kcal Electronic energy + Delta-G solvation = -15235.860763 eV Core-core repulsion = 12776.077056 eV Total energy + Delta-G solvation = -2459.783706 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.82577 -38.72639 -36.26990 -34.34755 -32.80136 -31.72112 -29.49724 -27.74299 -27.18184 -24.69104 -23.50867 -22.30940 -20.67804 -18.45616 -18.22861 -17.36715 -16.54725 -16.41957 -16.04827 -15.57578 -14.89422 -14.78046 -14.19501 -14.04355 -13.54425 -13.28479 -13.04306 -12.84708 -12.67737 -12.46088 -12.33349 -12.15632 -12.08454 -11.82089 -11.38335 -11.24222 -11.07028 -10.51032 -9.88693 -8.42562 -8.14396 -6.29779 -0.06002 0.25103 1.39835 1.40067 1.50825 1.54336 1.90391 2.43154 2.51492 3.11777 3.41791 3.69456 3.82774 4.12127 4.21975 4.50838 4.56131 4.76710 4.85539 4.87831 4.91658 4.94898 5.03573 5.06759 5.16660 5.25051 5.46415 5.49570 5.63230 5.75759 5.78960 5.99350 6.15717 6.25146 6.73965 6.83336 7.37325 8.90970 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.043523 B = 0.005978 C = 0.005882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.182502 B = 4682.712183 C = 4759.418708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.043 4.043 3 C -0.153 4.153 4 C 0.085 3.915 5 N -0.293 5.293 6 N -0.380 5.380 7 C 0.130 3.870 8 C 0.109 3.891 9 H 0.004 0.996 10 C -0.114 4.114 11 C -0.523 4.523 12 H 0.040 0.960 13 C 0.019 3.981 14 N -0.913 5.913 15 Si 0.964 3.036 16 H -0.275 1.275 17 H -0.269 1.269 18 H -0.276 1.276 19 C -0.312 4.312 20 C 0.093 3.907 21 C -0.139 4.139 22 H 0.091 0.909 23 H 0.078 0.922 24 H 0.092 0.908 25 H 0.197 0.803 26 H 0.181 0.819 27 H 0.025 0.975 28 H 0.041 0.959 29 H 0.069 0.931 30 H 0.266 0.734 31 H 0.152 0.848 32 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.027 7.073 -1.503 20.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.049 4.049 3 C -0.174 4.174 4 C -0.040 4.040 5 N -0.060 5.060 6 N -0.205 5.205 7 C -0.025 4.025 8 C 0.089 3.911 9 H 0.022 0.978 10 C -0.173 4.173 11 C -0.561 4.561 12 H 0.058 0.942 13 C -0.180 4.180 14 N -0.552 5.552 15 Si 0.788 3.212 16 H -0.200 1.200 17 H -0.194 1.194 18 H -0.202 1.202 19 C -0.340 4.340 20 C -0.026 4.026 21 C -0.158 4.158 22 H 0.109 0.891 23 H 0.097 0.903 24 H 0.111 0.889 25 H 0.214 0.786 26 H 0.198 0.802 27 H 0.044 0.956 28 H 0.060 0.940 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.170 0.830 32 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -18.128 8.102 -1.549 19.916 hybrid contribution 0.676 -1.057 0.748 1.461 sum -17.452 7.045 -0.801 18.838 Atomic orbital electron populations 1.20883 0.86685 1.04741 1.04095 1.20369 0.98912 0.91445 0.94124 1.21236 0.90624 1.01020 1.04542 1.22159 0.93260 0.88261 1.00270 1.46599 1.05799 1.06456 1.47108 1.77772 0.89416 1.17286 1.36025 1.22902 0.98131 0.90206 0.91302 1.17265 0.85258 0.92187 0.96415 0.97773 1.21559 1.02020 0.97904 0.95797 1.21092 1.05314 1.38133 0.91604 0.94158 1.25695 0.95706 0.95139 1.01471 1.69999 1.12080 1.40748 1.32359 0.85428 0.77922 0.78338 0.79475 1.19990 1.19443 1.20206 1.21314 0.89944 0.99733 1.23033 1.20018 0.94628 0.86270 1.01718 1.20731 0.88107 1.01359 1.05651 0.89065 0.90287 0.88934 0.78649 0.80190 0.95567 0.93976 0.91259 0.92436 0.83024 0.82003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.02 71.24 0.71 -0.36 16 2 C -0.04 -0.84 5.88 -19.82 -0.12 -0.96 16 3 C -0.15 -2.88 9.67 22.05 0.21 -2.67 16 4 C 0.09 2.36 11.19 83.20 0.93 3.29 16 5 N -0.29 -11.73 3.90 -187.79 -0.73 -12.46 16 6 N -0.38 -19.13 12.66 -47.88 -0.61 -19.74 16 7 C 0.13 6.77 6.02 42.68 0.26 7.02 16 8 C 0.11 6.23 2.76 -12.29 -0.03 6.19 16 9 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 10 C -0.11 -5.92 8.54 71.98 0.61 -5.31 16 11 C -0.52 -31.34 8.55 25.60 0.22 -31.12 16 12 H 0.04 2.48 7.74 -2.91 -0.02 2.45 16 13 C 0.02 1.11 5.30 84.65 0.45 1.55 16 14 N -0.91 -53.94 11.32 21.45 0.24 -53.70 16 15 Si 0.96 45.37 29.54 68.60 2.03 47.40 16 16 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 17 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 18 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 19 C -0.31 -14.08 10.05 22.51 0.23 -13.85 16 20 C 0.09 3.55 6.81 39.11 0.27 3.82 16 21 C -0.14 -3.72 9.75 22.39 0.22 -3.50 16 22 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 23 H 0.08 0.72 8.08 -2.39 -0.02 0.70 16 24 H 0.09 0.57 8.10 -2.39 -0.02 0.55 16 25 H 0.20 1.75 8.06 -2.91 -0.02 1.72 16 26 H 0.18 4.04 8.06 -2.91 -0.02 4.01 16 27 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.04 2.04 7.25 -2.39 -0.02 2.02 16 29 H 0.07 3.84 6.07 -2.38 -0.01 3.83 16 30 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 31 H 0.15 6.38 7.37 -2.91 -0.02 6.36 16 32 H 0.16 3.46 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -74.72 274.80 6.00 -68.73 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: 1.11 Total: 5.67 kcal Atomic # 6 Polarization: -39.85 SS G_CDS: 3.96 Total: -35.89 kcal Atomic # 7 Polarization: -84.81 SS G_CDS: -1.10 Total: -85.90 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -74.72 6.00 -68.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260478477.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.994 kcal (2) G-P(sol) polarization free energy of solvation -74.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds