Wall clock time and date at job start Mon Mar 30 2020 03:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40478 * 119.78684 * 2 1 4 4 C 1.36063 * 119.59224 * 179.97438 * 3 2 1 5 5 C 1.40797 * 119.22553 * 359.74115 * 4 3 2 6 6 C 1.38928 * 132.96359 * 179.53926 * 5 4 3 7 7 C 1.50706 * 126.21743 * 0.77330 * 6 5 4 8 8 H 1.08997 * 109.46477 * 359.71555 * 7 6 5 9 9 C 1.53001 * 109.47218 * 119.71595 * 7 6 5 10 10 C 1.50697 * 109.47142 * 239.71811 * 7 6 5 11 11 H 1.08000 * 120.00123 * 359.97438 * 10 7 6 12 12 C 1.37880 * 119.99925 * 179.97438 * 10 7 6 13 13 N 1.31506 * 119.99879 * 0.02562 * 12 10 7 14 14 Si 1.86800 * 119.99942 * 179.97438 * 12 10 7 15 15 H 1.48506 * 109.46570 * 90.00200 * 14 12 10 16 16 H 1.48493 * 109.47172 * 210.00070 * 14 12 10 17 17 H 1.48499 * 109.47134 * 330.00642 * 14 12 10 18 18 C 1.38552 * 107.57021 * 180.51126 * 6 5 4 19 19 N 1.31480 * 109.00391 * 0.26165 * 18 6 5 20 20 N 1.37135 * 119.96700 * 0.56642 * 5 4 3 21 21 C 1.34935 * 119.78379 * 180.02562 * 2 1 3 22 22 H 1.08996 * 109.47109 * 269.97870 * 1 2 3 23 23 H 1.09004 * 109.46579 * 29.98117 * 1 2 3 24 24 H 1.09001 * 109.46805 * 149.97859 * 1 2 3 25 25 H 1.08003 * 120.20133 * 0.02562 * 3 2 1 26 26 H 1.07997 * 120.38571 * 180.02562 * 4 3 2 27 27 H 1.09002 * 109.46875 * 180.02562 * 9 7 6 28 28 H 1.09006 * 109.46766 * 299.99906 * 9 7 6 29 29 H 1.09001 * 109.47185 * 60.00088 * 9 7 6 30 30 H 0.97000 * 120.00242 * 179.97438 * 13 12 10 31 31 H 1.08000 * 125.49778 * 180.28175 * 18 6 5 32 32 H 1.07998 * 119.66946 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2049 1.2192 0.0000 4 6 3.5655 1.2146 0.0005 5 6 4.2487 -0.0165 0.0066 6 6 5.5971 -0.3511 0.0005 7 6 6.7542 0.6146 0.0009 8 1 6.3746 1.6363 0.0016 9 6 7.6082 0.3868 1.2498 10 6 7.5947 0.3919 -1.2299 11 1 7.3189 -0.3727 -1.9411 12 6 8.7158 1.1642 -1.4481 13 7 9.0519 2.0949 -0.5819 14 14 9.7581 0.8877 -2.9734 15 1 9.2569 1.7452 -4.0775 16 1 11.1708 1.2370 -2.6776 17 1 9.6751 -0.5388 -3.3778 18 6 5.6850 -1.7338 0.0001 19 7 4.4715 -2.2399 -0.0001 20 7 3.5425 -1.1920 0.0002 21 6 2.1773 -1.1711 -0.0005 22 1 -0.3633 -0.0004 1.0276 23 1 -0.3632 0.8902 -0.5136 24 1 -0.3633 -0.8898 -0.5142 25 1 1.6647 2.1544 0.0004 26 1 4.1149 2.1443 0.0010 27 1 8.4448 1.0856 1.2502 28 1 7.0001 0.5480 2.1400 29 1 7.9877 -0.6350 1.2490 30 1 9.8408 2.6381 -0.7352 31 1 6.6022 -2.3039 0.0003 32 1 1.6284 -2.1012 -0.0014 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260486171.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:55 Heat of formation + Delta-G solvation = 73.192270 kcal Electronic energy + Delta-G solvation = -15435.502316 eV Core-core repulsion = 12975.845400 eV Total energy + Delta-G solvation = -2459.656916 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.82663 -38.57604 -36.33105 -33.90997 -33.09722 -32.14186 -29.09345 -27.23833 -27.07724 -24.27013 -23.67608 -22.65867 -20.87856 -18.49534 -17.74786 -17.36108 -16.58869 -16.44024 -16.03881 -15.53041 -14.86273 -14.53412 -14.21762 -14.07349 -13.38538 -13.20735 -12.95219 -12.88557 -12.81726 -12.57203 -12.27872 -12.11945 -12.06357 -11.77047 -11.36673 -11.21968 -10.81363 -10.41376 -9.96048 -8.25403 -7.98563 -6.17751 -0.03563 0.22980 1.42503 1.43558 1.49881 1.53989 1.88844 2.45032 2.56244 3.21895 3.40401 3.83287 3.94706 4.02111 4.16179 4.53068 4.69542 4.70705 4.77511 4.88581 4.94313 5.02245 5.16137 5.27041 5.29296 5.37921 5.39990 5.62860 5.64201 5.78900 5.96878 6.10243 6.13720 6.42212 6.73647 6.89719 7.49562 8.99496 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.037888 B = 0.006783 C = 0.006569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.850235 B = 4127.093622 C = 4261.568481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.122 4.122 3 C -0.080 4.080 4 C -0.121 4.121 5 C 0.063 3.937 6 C -0.220 4.220 7 C 0.118 3.882 8 H 0.004 0.996 9 C -0.118 4.118 10 C -0.517 4.517 11 H 0.044 0.956 12 C 0.017 3.983 13 N -0.916 5.916 14 Si 0.951 3.049 15 H -0.278 1.278 16 H -0.280 1.280 17 H -0.272 1.272 18 C 0.067 3.933 19 N -0.355 5.355 20 N -0.283 5.283 21 C 0.074 3.926 22 H 0.087 0.913 23 H 0.089 0.911 24 H 0.081 0.919 25 H 0.174 0.826 26 H 0.141 0.859 27 H 0.061 0.939 28 H 0.018 0.982 29 H 0.029 0.971 30 H 0.262 0.738 31 H 0.190 0.810 32 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.260 -1.979 1.637 16.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C -0.102 4.102 4 C -0.141 4.141 5 C -0.055 4.055 6 C -0.231 4.231 7 C 0.098 3.902 8 H 0.022 0.978 9 C -0.176 4.176 10 C -0.556 4.556 11 H 0.062 0.938 12 C -0.182 4.182 13 N -0.556 5.556 14 Si 0.777 3.223 15 H -0.204 1.204 16 H -0.206 1.206 17 H -0.197 1.197 18 C -0.106 4.106 19 N -0.180 5.180 20 N -0.050 5.050 21 C -0.050 4.050 22 H 0.106 0.894 23 H 0.108 0.892 24 H 0.100 0.900 25 H 0.192 0.808 26 H 0.159 0.841 27 H 0.079 0.921 28 H 0.037 0.963 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.207 0.793 32 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -16.698 -3.070 1.665 17.059 hybrid contribution 1.732 0.602 -0.733 1.974 sum -14.966 -2.469 0.933 15.197 Atomic orbital electron populations 1.20722 0.85574 1.04724 1.03981 1.19962 0.99151 0.90469 1.03037 1.21460 0.92338 0.99817 0.96608 1.20818 0.95578 0.95055 1.02612 1.19757 0.92452 0.88506 1.04799 1.20665 0.93005 0.95065 1.14357 1.16932 0.88475 0.90911 0.93856 0.97752 1.21603 1.00318 0.99924 0.95767 1.21383 1.09531 1.18109 1.06533 0.93813 1.25653 0.98484 0.94927 0.99125 1.69997 1.26772 1.22207 1.36621 0.85662 0.78126 0.78424 0.80074 1.20378 1.20568 1.19676 1.23659 0.95596 0.94341 0.97009 1.77591 0.97739 1.08609 1.34101 1.46292 1.06112 1.05472 1.47165 1.21861 0.78388 1.02121 1.02621 0.89429 0.89212 0.90027 0.80815 0.84133 0.92060 0.96318 0.95170 0.92925 0.79297 0.79822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.05 10.00 71.24 0.71 -0.33 16 2 C -0.12 -2.63 5.84 -20.08 -0.12 -2.75 16 3 C -0.08 -1.92 9.74 22.31 0.22 -1.70 16 4 C -0.12 -4.12 9.94 22.39 0.22 -3.90 16 5 C 0.06 2.65 6.76 39.11 0.26 2.92 16 6 C -0.22 -10.45 4.83 -19.62 -0.09 -10.54 16 7 C 0.12 6.24 2.67 -12.28 -0.03 6.20 16 8 H 0.00 0.25 7.67 -2.39 -0.02 0.23 16 9 C -0.12 -5.99 8.86 71.98 0.64 -5.35 16 10 C -0.52 -29.38 8.41 25.60 0.22 -29.16 16 11 H 0.04 2.52 7.73 -2.91 -0.02 2.49 16 12 C 0.02 0.93 5.30 84.66 0.45 1.38 16 13 N -0.92 -53.06 11.32 21.45 0.24 -52.82 16 14 Si 0.95 44.39 29.54 68.60 2.03 46.42 16 15 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 16 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 17 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 18 C 0.07 3.00 11.43 84.82 0.97 3.97 16 19 N -0.35 -14.97 12.66 -57.54 -0.73 -15.69 16 20 N -0.28 -10.83 3.90 -187.79 -0.73 -11.56 16 21 C 0.07 2.03 10.80 83.20 0.90 2.93 16 22 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 23 H 0.09 0.75 8.09 -2.39 -0.02 0.73 16 24 H 0.08 0.74 8.07 -2.39 -0.02 0.72 16 25 H 0.17 2.72 8.06 -2.91 -0.02 2.69 16 26 H 0.14 4.80 7.76 -2.91 -0.02 4.77 16 27 H 0.06 3.36 6.07 -2.39 -0.01 3.35 16 28 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 29 H 0.03 1.44 8.02 -2.39 -0.02 1.42 16 30 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 31 H 0.19 7.83 8.06 -2.91 -0.02 7.80 16 32 H 0.18 3.84 8.06 -2.91 -0.02 3.81 16 Total: -1.00 -68.84 275.51 6.25 -62.58 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: 1.11 Total: 7.43 kcal Atomic # 6 Polarization: -40.70 SS G_CDS: 4.34 Total: -36.36 kcal Atomic # 7 Polarization: -78.86 SS G_CDS: -1.22 Total: -80.08 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -68.84 6.25 -62.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260486171.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.777 kcal (2) G-P(sol) polarization free energy of solvation -68.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds