Wall clock time and date at job start Mon Mar 30 2020 03:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40467 * 119.78523 * 2 1 4 4 C 1.36067 * 119.59449 * 179.97438 * 3 2 1 5 5 C 1.40798 * 119.22235 * 0.02562 * 4 3 2 6 6 C 1.38926 * 132.96795 * 179.97438 * 5 4 3 7 7 C 1.50703 * 126.21424 * 359.96073 * 6 5 4 8 8 H 1.09002 * 109.46993 * 0.02562 * 7 6 5 9 9 C 1.53002 * 109.47167 * 240.00311 * 7 6 5 10 10 C 1.50704 * 109.47154 * 119.99976 * 7 6 5 11 11 H 1.07997 * 120.00303 * 5.62434 * 10 7 6 12 12 C 1.37881 * 119.99587 * 185.61984 * 10 7 6 13 13 N 1.31511 * 119.99364 * 197.57041 * 12 10 7 14 14 Si 1.86794 * 120.00206 * 17.57581 * 12 10 7 15 15 H 1.48506 * 109.47100 * 179.97438 * 14 12 10 16 16 H 1.48500 * 109.47508 * 299.99589 * 14 12 10 17 17 H 1.48501 * 109.47107 * 59.99971 * 14 12 10 18 18 C 1.38543 * 107.57348 * 180.22292 * 6 5 4 19 19 N 1.31489 * 109.00341 * 359.61437 * 18 6 5 20 20 N 1.37137 * 119.97229 * 359.97438 * 5 4 3 21 21 C 1.34937 * 119.78157 * 179.97438 * 2 1 3 22 22 H 1.08998 * 109.47069 * 270.02578 * 1 2 3 23 23 H 1.08997 * 109.47069 * 30.02277 * 1 2 3 24 24 H 1.08993 * 109.46901 * 150.02846 * 1 2 3 25 25 H 1.08005 * 120.20669 * 359.94699 * 3 2 1 26 26 H 1.08000 * 120.39168 * 179.97438 * 4 3 2 27 27 H 1.08998 * 109.46981 * 186.23274 * 9 7 6 28 28 H 1.08998 * 109.46879 * 306.22529 * 9 7 6 29 29 H 1.08999 * 109.47257 * 66.22439 * 9 7 6 30 30 H 0.97000 * 120.00334 * 354.85061 * 13 12 10 31 31 H 1.08001 * 125.50233 * 179.73112 * 18 6 5 32 32 H 1.07994 * 119.67141 * 0.02726 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2048 1.2191 0.0000 4 6 3.5655 1.2146 0.0005 5 6 4.2487 -0.0165 0.0005 6 6 5.5971 -0.3511 0.0005 7 6 6.7541 0.6146 -0.0003 8 1 6.3745 1.6364 -0.0005 9 6 7.6076 0.3869 -1.2496 10 6 7.5952 0.3919 1.2302 11 1 7.3732 -0.4301 1.8946 12 6 8.6482 1.2376 1.5077 13 7 9.5820 0.8681 2.3569 14 14 8.7484 2.9080 0.6777 15 1 9.9661 3.6196 1.1428 16 1 8.8130 2.7261 -0.7947 17 1 7.5457 3.7065 1.0256 18 6 5.6850 -1.7337 -0.0046 19 7 4.4715 -2.2399 0.0007 20 7 3.5425 -1.1920 0.0005 21 6 2.1772 -1.1712 0.0005 22 1 -0.3633 0.0005 1.0276 23 1 -0.3633 0.8898 -0.5142 24 1 -0.3633 -0.8902 -0.5134 25 1 1.6646 2.1544 -0.0009 26 1 4.1149 2.1443 0.0001 27 1 8.5025 1.0067 -1.1961 28 1 7.8956 -0.6628 -1.3064 29 1 7.0326 0.6544 -2.1361 30 1 9.4921 0.0341 2.8440 31 1 6.6022 -2.3039 -0.0101 32 1 1.6284 -2.1012 0.0005 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260486178.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:57 Heat of formation + Delta-G solvation = 90.819754 kcal Electronic energy + Delta-G solvation = -15496.735360 eV Core-core repulsion = 13037.842829 eV Total energy + Delta-G solvation = -2458.892531 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.49104 -37.37642 -34.60502 -32.40657 -31.92540 -30.85358 -27.92854 -26.13365 -24.61132 -23.10125 -21.93629 -21.36762 -19.13479 -17.44830 -16.54422 -16.16267 -15.14704 -15.02830 -14.30697 -14.05766 -13.48355 -13.31819 -13.04924 -12.52103 -12.42120 -12.05453 -11.86514 -11.57932 -11.23000 -10.97471 -10.75643 -10.39524 -10.29706 -9.86136 -9.67762 -9.58913 -8.86232 -8.70973 -8.15925 -6.90810 -6.33307 -3.99957 1.13652 1.49882 2.75541 3.31312 3.41410 3.44477 3.63168 3.80487 4.52619 4.58456 4.85051 5.04349 5.11592 5.16837 5.31976 5.47380 5.57192 5.71131 5.83523 6.02309 6.07678 6.28300 6.37687 6.48253 6.57328 6.73981 6.79360 6.87272 7.16772 7.31291 7.38668 7.55955 8.09297 8.22940 8.43933 8.97188 9.67698 10.99575 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.035943 B = 0.007593 C = 0.006860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.821748 B = 3686.778193 C = 4080.443274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.142 4.142 3 C -0.110 4.110 4 C -0.084 4.084 5 C 0.066 3.934 6 C -0.165 4.165 7 C 0.085 3.915 8 H 0.024 0.976 9 C -0.142 4.142 10 C -0.588 4.588 11 H 0.055 0.945 12 C 0.029 3.971 13 N -0.909 5.909 14 Si 1.045 2.955 15 H -0.287 1.287 16 H -0.273 1.273 17 H -0.284 1.284 18 C 0.079 3.921 19 N -0.332 5.332 20 N -0.283 5.283 21 C 0.102 3.898 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.132 0.868 26 H 0.144 0.856 27 H 0.055 0.945 28 H 0.043 0.957 29 H 0.021 0.979 30 H 0.267 0.733 31 H 0.187 0.813 32 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.512 0.526 -6.404 16.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.147 4.147 3 C -0.133 4.133 4 C -0.103 4.103 5 C -0.050 4.050 6 C -0.175 4.175 7 C 0.064 3.936 8 H 0.042 0.958 9 C -0.200 4.200 10 C -0.626 4.626 11 H 0.073 0.927 12 C -0.175 4.175 13 N -0.543 5.543 14 Si 0.874 3.126 15 H -0.213 1.213 16 H -0.199 1.199 17 H -0.211 1.211 18 C -0.096 4.096 19 N -0.157 5.157 20 N -0.051 5.051 21 C -0.023 4.023 22 H 0.088 0.912 23 H 0.088 0.912 24 H 0.083 0.917 25 H 0.150 0.850 26 H 0.162 0.838 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.040 0.960 30 H 0.077 0.923 31 H 0.204 0.796 32 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -15.118 0.660 -6.544 16.487 hybrid contribution -0.469 -0.783 0.344 0.975 sum -15.587 -0.123 -6.199 16.775 Atomic orbital electron populations 1.20563 0.89495 1.02815 1.02350 1.19300 0.96718 0.91779 1.06871 1.20871 0.93662 0.97554 1.01179 1.20640 0.93938 0.96146 0.99609 1.19430 0.92585 0.87044 1.05966 1.20536 0.92037 0.94718 1.10250 1.17498 0.89038 0.91831 0.95189 0.95806 1.22203 0.99888 1.01027 0.96836 1.21965 1.16045 1.15979 1.08651 0.92651 1.25753 0.91485 1.02808 0.97476 1.70855 1.30475 1.25615 1.27385 0.84047 0.76205 0.75919 0.76462 1.21289 1.19934 1.21073 1.23624 0.95021 0.94532 0.96418 1.77715 0.97774 1.07971 1.32198 1.46022 1.04829 1.06193 1.48059 1.21037 0.79893 0.99690 1.01645 0.91248 0.91180 0.91659 0.84966 0.83849 0.92636 0.93794 0.95996 0.92326 0.79646 0.82633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.78 10.00 36.01 0.36 -0.42 16 2 C -0.14 -1.78 5.84 -104.95 -0.61 -2.39 16 3 C -0.11 -1.46 9.74 -39.52 -0.38 -1.85 16 4 C -0.08 -1.40 9.94 -39.39 -0.39 -1.79 16 5 C 0.07 1.34 6.76 -84.27 -0.57 0.77 16 6 C -0.16 -3.68 4.84 -104.25 -0.50 -4.18 16 7 C 0.08 2.02 2.26 -92.92 -0.21 1.81 16 8 H 0.02 0.56 6.32 -51.93 -0.33 0.24 16 9 C -0.14 -3.13 8.82 37.16 0.33 -2.80 16 10 C -0.59 -16.46 8.69 -34.44 -0.30 -16.76 16 11 H 0.06 1.69 7.94 -52.49 -0.42 1.28 16 12 C 0.03 0.84 5.29 -17.82 -0.09 0.74 16 13 N -0.91 -27.86 13.70 55.43 0.76 -27.10 16 14 Si 1.04 24.90 26.29 -169.99 -4.47 20.43 16 15 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.27 -5.98 5.76 56.52 0.33 -5.65 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 C 0.08 1.69 11.26 -17.59 -0.20 1.49 16 19 N -0.33 -6.86 12.66 30.46 0.39 -6.48 16 20 N -0.28 -5.41 3.90 -10.71 -0.04 -5.45 16 21 C 0.10 1.51 10.80 -16.63 -0.18 1.33 16 22 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 24 H 0.06 0.46 8.07 -51.93 -0.42 0.04 16 25 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 26 H 0.14 2.23 7.76 -52.49 -0.41 1.82 16 27 H 0.05 1.26 4.89 -51.93 -0.25 1.00 16 28 H 0.04 0.93 7.84 -51.93 -0.41 0.53 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.27 8.18 8.73 -40.82 -0.36 7.83 16 31 H 0.19 3.67 8.06 -52.49 -0.42 3.25 16 32 H 0.16 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 270.85 15.07 4.08 4.08 Total: -1.00 -32.24 270.85 -6.04 -38.28 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -3.99 Total: 0.27 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: -2.76 Total: -24.04 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: 1.10 Total: -39.02 kcal Atomic # 14 Polarization: 24.90 SS G_CDS: -4.47 Total: 20.43 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -32.24 -6.04 -38.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260486178.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.099 kcal (2) G-P(sol) polarization free energy of solvation -32.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds