Wall clock time and date at job start Mon Mar 30 2020 03:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40467 * 119.78523 * 2 1 4 4 C 1.36067 * 119.59449 * 179.97438 * 3 2 1 5 5 C 1.40798 * 119.22235 * 0.02562 * 4 3 2 6 6 C 1.38926 * 132.96795 * 179.97438 * 5 4 3 7 7 C 1.50703 * 126.21424 * 359.96073 * 6 5 4 8 8 H 1.09002 * 109.46993 * 0.02562 * 7 6 5 9 9 C 1.53002 * 109.47167 * 240.00311 * 7 6 5 10 10 C 1.50704 * 109.47154 * 119.99976 * 7 6 5 11 11 H 1.07997 * 120.00303 * 5.62434 * 10 7 6 12 12 C 1.37881 * 119.99587 * 185.61984 * 10 7 6 13 13 N 1.31511 * 119.99364 * 197.57041 * 12 10 7 14 14 Si 1.86794 * 120.00206 * 17.57581 * 12 10 7 15 15 H 1.48506 * 109.47100 * 179.97438 * 14 12 10 16 16 H 1.48500 * 109.47508 * 299.99589 * 14 12 10 17 17 H 1.48501 * 109.47107 * 59.99971 * 14 12 10 18 18 C 1.38543 * 107.57348 * 180.22292 * 6 5 4 19 19 N 1.31489 * 109.00341 * 359.61437 * 18 6 5 20 20 N 1.37137 * 119.97229 * 359.97438 * 5 4 3 21 21 C 1.34937 * 119.78157 * 179.97438 * 2 1 3 22 22 H 1.08998 * 109.47069 * 270.02578 * 1 2 3 23 23 H 1.08997 * 109.47069 * 30.02277 * 1 2 3 24 24 H 1.08993 * 109.46901 * 150.02846 * 1 2 3 25 25 H 1.08005 * 120.20669 * 359.94699 * 3 2 1 26 26 H 1.08000 * 120.39168 * 179.97438 * 4 3 2 27 27 H 1.08998 * 109.46981 * 186.23274 * 9 7 6 28 28 H 1.08998 * 109.46879 * 306.22529 * 9 7 6 29 29 H 1.08999 * 109.47257 * 66.22439 * 9 7 6 30 30 H 0.97000 * 120.00334 * 354.85061 * 13 12 10 31 31 H 1.08001 * 125.50233 * 179.73112 * 18 6 5 32 32 H 1.07994 * 119.67141 * 0.02726 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2048 1.2191 0.0000 4 6 3.5655 1.2146 0.0005 5 6 4.2487 -0.0165 0.0005 6 6 5.5971 -0.3511 0.0005 7 6 6.7541 0.6146 -0.0003 8 1 6.3745 1.6364 -0.0005 9 6 7.6076 0.3869 -1.2496 10 6 7.5952 0.3919 1.2302 11 1 7.3732 -0.4301 1.8946 12 6 8.6482 1.2376 1.5077 13 7 9.5820 0.8681 2.3569 14 14 8.7484 2.9080 0.6777 15 1 9.9661 3.6196 1.1428 16 1 8.8130 2.7261 -0.7947 17 1 7.5457 3.7065 1.0256 18 6 5.6850 -1.7337 -0.0046 19 7 4.4715 -2.2399 0.0007 20 7 3.5425 -1.1920 0.0005 21 6 2.1772 -1.1712 0.0005 22 1 -0.3633 0.0005 1.0276 23 1 -0.3633 0.8898 -0.5142 24 1 -0.3633 -0.8902 -0.5134 25 1 1.6646 2.1544 -0.0009 26 1 4.1149 2.1443 0.0001 27 1 8.5025 1.0067 -1.1961 28 1 7.8956 -0.6628 -1.3064 29 1 7.0326 0.6544 -2.1361 30 1 9.4921 0.0341 2.8440 31 1 6.6022 -2.3039 -0.0101 32 1 1.6284 -2.1012 0.0005 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260486178.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:56 Heat of formation + Delta-G solvation = 70.450887 kcal Electronic energy + Delta-G solvation = -15497.618621 eV Core-core repulsion = 13037.842829 eV Total energy + Delta-G solvation = -2459.775791 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.90363 -38.64420 -36.42877 -34.07150 -33.18722 -32.53745 -29.28729 -27.28937 -26.65668 -24.32545 -23.59081 -22.74303 -20.80970 -19.47557 -17.97143 -17.47010 -16.55828 -16.28960 -15.80030 -15.60299 -15.12740 -14.66977 -14.25306 -14.07595 -13.96110 -13.29834 -13.16127 -12.97933 -12.78018 -12.29781 -12.24795 -12.18712 -11.89194 -11.50836 -11.39440 -11.28882 -10.87611 -10.33669 -10.02053 -8.77927 -8.18834 -6.28499 -0.08029 0.17581 1.43543 1.50526 1.58193 1.77631 1.79849 2.49128 2.55124 3.12746 3.33668 3.76735 3.90401 3.96939 4.11061 4.45099 4.52401 4.61848 4.64478 4.81288 4.85353 4.91945 4.99784 5.05200 5.24419 5.28988 5.35539 5.36390 5.58878 5.67339 5.79940 6.03757 6.07479 6.16993 6.63802 6.65508 7.48924 8.69823 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.035943 B = 0.007593 C = 0.006860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.821748 B = 3686.778193 C = 4080.443274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.119 4.119 3 C -0.077 4.077 4 C -0.122 4.122 5 C 0.068 3.932 6 C -0.219 4.219 7 C 0.090 3.910 8 H 0.032 0.968 9 C -0.136 4.136 10 C -0.586 4.586 11 H 0.008 0.992 12 C -0.024 4.024 13 N -0.943 5.943 14 Si 1.084 2.916 15 H -0.292 1.292 16 H -0.239 1.239 17 H -0.260 1.260 18 C 0.064 3.936 19 N -0.358 5.358 20 N -0.282 5.282 21 C 0.071 3.929 22 H 0.085 0.915 23 H 0.093 0.907 24 H 0.081 0.919 25 H 0.179 0.821 26 H 0.152 0.848 27 H 0.048 0.952 28 H 0.037 0.963 29 H 0.048 0.952 30 H 0.248 0.752 31 H 0.181 0.819 32 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.378 2.682 -8.014 21.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.099 4.099 4 C -0.141 4.141 5 C -0.051 4.051 6 C -0.230 4.230 7 C 0.070 3.930 8 H 0.050 0.950 9 C -0.194 4.194 10 C -0.624 4.624 11 H 0.027 0.973 12 C -0.220 4.220 13 N -0.580 5.580 14 Si 0.904 3.096 15 H -0.219 1.219 16 H -0.163 1.163 17 H -0.185 1.185 18 C -0.110 4.110 19 N -0.183 5.183 20 N -0.049 5.049 21 C -0.053 4.053 22 H 0.103 0.897 23 H 0.112 0.888 24 H 0.100 0.900 25 H 0.196 0.804 26 H 0.170 0.830 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.198 0.802 32 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -19.014 2.774 -8.166 20.879 hybrid contribution 0.381 -1.479 0.893 1.769 sum -18.634 1.295 -7.273 20.045 Atomic orbital electron populations 1.20737 0.85562 1.04897 1.03922 1.19996 0.99186 0.90522 1.02631 1.21514 0.92449 0.99798 0.96182 1.20908 0.95602 0.95050 1.02568 1.19780 0.92198 0.88649 1.04472 1.20372 0.92871 0.94660 1.15085 1.17321 0.89372 0.92734 0.93582 0.94997 1.22091 0.99543 1.00623 0.97140 1.22146 1.16672 1.14010 1.09537 0.97343 1.27288 0.90988 1.06290 0.97451 1.71000 1.32291 1.25236 1.29437 0.83607 0.76865 0.71478 0.77606 1.21886 1.16348 1.18521 1.23569 0.95434 0.94686 0.97278 1.77608 0.97718 1.08766 1.34249 1.46293 1.06162 1.05528 1.46947 1.21873 0.78305 1.02235 1.02865 0.89684 0.88832 0.90028 0.80367 0.83016 0.93311 0.94398 0.93259 0.94318 0.80209 0.80048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.95 10.00 71.24 0.71 -0.24 16 2 C -0.12 -2.40 5.84 -20.08 -0.12 -2.51 16 3 C -0.08 -1.65 9.74 22.31 0.22 -1.43 16 4 C -0.12 -3.74 9.94 22.39 0.22 -3.51 16 5 C 0.07 2.70 6.76 39.10 0.26 2.96 16 6 C -0.22 -10.05 4.84 -19.63 -0.09 -10.15 16 7 C 0.09 4.37 2.26 -12.28 -0.03 4.34 16 8 H 0.03 1.48 6.32 -2.39 -0.02 1.47 16 9 C -0.14 -5.99 8.82 71.98 0.63 -5.36 16 10 C -0.59 -34.29 8.69 25.60 0.22 -34.07 16 11 H 0.01 0.54 7.94 -2.91 -0.02 0.52 16 12 C -0.02 -1.39 5.29 84.66 0.45 -0.94 16 13 N -0.94 -60.46 13.70 21.45 0.29 -60.17 16 14 Si 1.08 49.70 26.29 68.60 1.80 51.51 16 15 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 16 H -0.24 -9.65 5.76 99.48 0.57 -9.08 16 17 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 18 C 0.06 2.87 11.26 84.82 0.96 3.82 16 19 N -0.36 -15.23 12.66 -57.54 -0.73 -15.96 16 20 N -0.28 -10.59 3.90 -187.78 -0.73 -11.32 16 21 C 0.07 1.90 10.80 83.20 0.90 2.79 16 22 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 23 H 0.09 0.61 8.09 -2.39 -0.02 0.60 16 24 H 0.08 0.65 8.07 -2.39 -0.02 0.63 16 25 H 0.18 2.25 8.06 -2.91 -0.02 2.23 16 26 H 0.15 4.32 7.76 -2.91 -0.02 4.29 16 27 H 0.05 2.16 4.89 -2.39 -0.01 2.15 16 28 H 0.04 1.65 7.84 -2.39 -0.02 1.63 16 29 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.25 16.28 8.73 -92.71 -0.81 15.47 16 31 H 0.18 7.85 8.06 -2.91 -0.02 7.83 16 32 H 0.18 3.74 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -75.21 270.85 5.91 -69.30 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: 0.94 Total: 10.93 kcal Atomic # 6 Polarization: -48.63 SS G_CDS: 4.34 Total: -44.29 kcal Atomic # 7 Polarization: -86.28 SS G_CDS: -1.17 Total: -87.45 kcal Atomic # 14 Polarization: 49.70 SS G_CDS: 1.80 Total: 51.51 kcal Total: -75.21 5.91 -69.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260486178.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.751 kcal (2) G-P(sol) polarization free energy of solvation -75.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds