Wall clock time and date at job start Mon Mar 30 2020 02:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35721 * 116.99987 * 2 1 4 4 C 1.39198 * 119.78756 * 359.97438 * 3 2 1 5 5 C 1.36641 * 120.15214 * 180.71939 * 4 3 2 6 6 C 1.40304 * 119.62635 * 0.57363 * 5 4 3 7 7 C 1.40424 * 119.95810 * 357.80168 * 6 5 4 8 8 C 1.36536 * 119.76101 * 2.55269 * 7 6 5 9 9 C 1.50566 * 119.82949 * 182.57238 * 7 6 5 10 10 C 1.52626 * 110.30543 * 323.47595 * 9 7 6 11 11 C 1.50464 * 110.73687 * 50.18653 * 10 9 7 12 12 C 1.38778 * 119.72071 * 144.36563 * 11 10 9 13 13 H 1.08007 * 119.99626 * 203.78448 * 12 11 10 14 14 C 1.40585 * 120.00433 * 23.50590 * 12 11 10 15 15 N 1.30589 * 119.99538 * 11.33124 * 14 12 11 16 16 Si 1.86792 * 120.00237 * 191.33620 * 14 12 11 17 17 H 1.48499 * 109.47301 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47115 * 119.99676 * 16 14 12 19 19 H 1.48496 * 109.47349 * 240.00050 * 16 14 12 20 20 C 1.38232 * 120.55548 * 324.64255 * 11 10 9 21 21 H 1.08998 * 109.47439 * 60.00637 * 1 2 3 22 22 H 1.08998 * 109.47062 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46925 * 300.00148 * 1 2 3 24 24 H 1.07996 * 119.92754 * 0.69622 * 4 3 2 25 25 H 1.08003 * 120.18824 * 180.54933 * 5 4 3 26 26 H 1.08002 * 119.98382 * 178.73167 * 8 7 6 27 27 H 1.08996 * 109.32982 * 203.22261 * 9 7 6 28 28 H 1.09001 * 109.19088 * 83.64399 * 9 7 6 29 29 H 1.08996 * 109.22836 * 289.86003 * 10 9 7 30 30 H 1.09002 * 109.19103 * 170.48221 * 10 9 7 31 31 H 0.96998 * 119.99648 * 179.97438 * 15 14 12 32 32 H 1.08005 * 120.31621 * 182.18576 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2827 2.3739 -0.0005 5 6 1.8952 3.5952 -0.0154 6 6 3.2961 3.6683 -0.0423 7 6 4.0605 2.4909 -0.0071 8 6 3.4355 1.2770 0.0004 9 6 5.5636 2.5744 0.0225 10 6 6.0465 3.7381 -0.8389 11 6 5.3081 5.0018 -0.4897 12 6 5.9727 6.2195 -0.5268 13 1 5.6118 7.0498 0.0624 14 6 7.1189 6.3709 -1.3266 15 7 7.4327 5.4507 -2.1985 16 14 8.1929 7.8879 -1.1422 17 1 7.6246 8.7722 -0.0932 18 1 9.5660 7.4779 -0.7525 19 1 8.2424 8.6195 -2.4335 20 6 3.9750 4.9592 -0.1266 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 0.2046 2.3120 0.0104 25 1 1.3044 4.4992 -0.0069 26 1 4.0201 0.3689 0.0067 27 1 5.9842 1.6441 -0.3592 28 1 5.8939 2.7249 1.0503 29 1 5.8766 3.5018 -1.8893 30 1 7.1133 3.8883 -0.6728 31 1 8.2233 5.5553 -2.7506 32 1 3.4394 5.8720 0.0891 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260509447.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:47 Heat of formation + Delta-G solvation = -24.194259 kcal Electronic energy + Delta-G solvation = -15283.341290 eV Core-core repulsion = 12787.168627 eV Total energy + Delta-G solvation = -2496.172664 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.36002 -37.54492 -35.23991 -32.88721 -31.27914 -28.99596 -28.38327 -26.83148 -24.81646 -22.49220 -21.22645 -20.61961 -18.19867 -17.02977 -16.15550 -15.61327 -15.18143 -14.96649 -14.33792 -13.76688 -13.35586 -13.13241 -12.76609 -12.28404 -11.98890 -11.84262 -11.58720 -11.44659 -11.22754 -10.83232 -10.75175 -10.58338 -10.30858 -10.17556 -9.62076 -9.26734 -9.19806 -8.22913 -7.97120 -7.09784 -6.62313 -4.38580 2.16989 2.33218 2.84914 2.94357 3.00427 3.67869 3.74613 3.93477 4.67852 5.23649 5.35743 5.44173 5.56767 5.71806 5.72239 6.02667 6.05499 6.32416 6.40736 6.51653 6.56565 6.75283 6.83949 6.90367 7.08060 7.20368 7.24068 7.44415 7.46636 7.56053 7.79478 7.90771 8.15473 8.28264 8.30767 8.83300 8.91223 9.86027 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.064305 B = 0.005816 C = 0.005490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.318619 B = 4812.966008 C = 5099.054953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.329 6.329 3 C 0.035 3.965 4 C -0.181 4.181 5 C -0.149 4.149 6 C 0.031 3.969 7 C -0.109 4.109 8 C -0.120 4.120 9 C -0.070 4.070 10 C -0.063 4.063 11 C 0.114 3.886 12 C -0.430 4.430 13 H 0.084 0.916 14 C 0.068 3.932 15 N -0.778 5.778 16 Si 0.917 3.083 17 H -0.257 1.257 18 H -0.269 1.269 19 H -0.271 1.271 20 C -0.392 4.392 21 H 0.046 0.954 22 H 0.087 0.913 23 H 0.046 0.954 24 H 0.107 0.893 25 H 0.108 0.892 26 H 0.111 0.889 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.287 0.713 32 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.702 -4.068 1.641 5.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.244 6.244 3 C -0.009 4.009 4 C -0.200 4.200 5 C -0.168 4.168 6 C 0.030 3.970 7 C -0.109 4.109 8 C -0.138 4.138 9 C -0.107 4.107 10 C -0.100 4.100 11 C 0.111 3.889 12 C -0.457 4.457 13 H 0.102 0.898 14 C -0.153 4.153 15 N -0.401 5.401 16 Si 0.741 3.259 17 H -0.181 1.181 18 H -0.194 1.194 19 H -0.196 1.196 20 C -0.413 4.413 21 H 0.065 0.935 22 H 0.105 0.895 23 H 0.064 0.936 24 H 0.125 0.875 25 H 0.126 0.874 26 H 0.129 0.871 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.408 -4.312 1.439 5.681 hybrid contribution 0.083 0.836 -0.045 0.842 sum -3.325 -3.476 1.393 5.008 Atomic orbital electron populations 1.22809 0.80214 1.02381 1.00660 1.85895 1.19842 1.28138 1.90538 1.18755 0.91954 0.83258 1.06886 1.20636 0.98269 0.92795 1.08258 1.20550 0.94165 0.95878 1.06205 1.18836 0.91648 0.93634 0.92841 1.19477 0.95501 0.91733 1.04192 1.19719 0.90811 0.97420 1.05893 1.20366 0.91198 0.98956 1.00223 1.20278 0.99369 0.91793 0.98576 1.19226 0.90922 0.93026 0.85734 1.19623 1.06371 0.98878 1.20850 0.89809 1.26301 0.97342 0.98242 0.93427 1.69739 1.23249 1.32799 1.14311 0.86096 0.79422 0.80866 0.79555 1.18058 1.19422 1.19609 1.20896 0.94702 0.92562 1.33154 0.93508 0.89471 0.93558 0.87472 0.87381 0.87082 0.92513 0.92218 0.91466 0.90883 0.90197 0.89508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 9.80 101.05 0.99 1.45 16 2 O -0.33 -5.95 10.48 -18.87 -0.20 -6.15 16 3 C 0.03 0.70 6.71 -38.87 -0.26 0.44 16 4 C -0.18 -3.56 8.97 -39.80 -0.36 -3.92 16 5 C -0.15 -3.24 9.80 -39.38 -0.39 -3.62 16 6 C 0.03 0.74 5.81 -105.15 -0.61 0.13 16 7 C -0.11 -2.47 5.64 -104.48 -0.59 -3.05 16 8 C -0.12 -2.52 9.56 -39.84 -0.38 -2.90 16 9 C -0.07 -1.51 5.92 -28.14 -0.17 -1.67 16 10 C -0.06 -1.50 4.26 -28.19 -0.12 -1.62 16 11 C 0.11 2.94 5.50 -104.54 -0.58 2.36 16 12 C -0.43 -10.86 8.94 -38.50 -0.34 -11.21 16 13 H 0.08 2.08 7.88 -52.48 -0.41 1.66 16 14 C 0.07 1.58 5.13 -17.20 -0.09 1.49 16 15 N -0.78 -18.39 10.68 55.58 0.59 -17.79 16 16 Si 0.92 17.38 29.58 -169.99 -5.03 12.35 16 17 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 18 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 19 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 20 C -0.39 -10.04 9.66 -36.43 -0.35 -10.39 16 21 H 0.05 0.58 7.65 -51.93 -0.40 0.18 16 22 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.05 0.57 7.64 -51.93 -0.40 0.17 16 24 H 0.11 1.78 6.26 -52.49 -0.33 1.45 16 25 H 0.11 2.16 8.06 -52.48 -0.42 1.74 16 26 H 0.11 2.12 8.05 -52.49 -0.42 1.70 16 27 H 0.06 1.08 8.03 -51.93 -0.42 0.66 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.07 1.68 7.95 -51.93 -0.41 1.27 16 30 H 0.07 1.74 6.65 -51.93 -0.35 1.39 16 31 H 0.29 6.09 8.29 -40.82 -0.34 5.75 16 32 H 0.09 2.21 8.06 -52.48 -0.42 1.79 16 LS Contribution 268.56 15.07 4.05 4.05 Total: -1.00 -26.96 268.56 -7.78 -34.75 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -3.96 Total: 5.31 kcal Atomic # 6 Polarization: -29.26 SS G_CDS: -3.24 Total: -32.50 kcal Atomic # 7 Polarization: -18.39 SS G_CDS: 0.59 Total: -17.79 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: -0.20 Total: -6.15 kcal Atomic # 14 Polarization: 17.38 SS G_CDS: -5.03 Total: 12.35 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -26.96 -7.78 -34.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260509447.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.551 kcal (2) G-P(sol) polarization free energy of solvation -26.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds