Wall clock time and date at job start Mon Mar 30 2020 03:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.35100 * 125.68483 * 2 1 4 4 N 1.36837 * 107.17740 * 179.70139 * 3 2 1 5 5 C 1.36483 * 132.56755 * 180.28280 * 4 3 2 6 6 C 1.34959 * 120.60976 * 179.97438 * 5 4 3 7 7 C 1.40476 * 120.29622 * 359.97438 * 6 5 4 8 8 C 1.36017 * 119.69514 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.33464 * 179.97438 * 8 7 6 10 10 H 1.09005 * 109.47457 * 180.02562 * 9 8 7 11 11 C 1.53000 * 109.47371 * 60.00169 * 9 8 7 12 12 C 1.50706 * 109.47409 * 299.99933 * 9 8 7 13 13 H 1.07999 * 119.99348 * 0.02562 * 12 9 8 14 14 C 1.37871 * 119.99994 * 179.97438 * 12 9 8 15 15 N 1.31513 * 120.00313 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 119.99628 * 180.02562 * 14 12 9 17 17 H 1.48501 * 109.47349 * 90.00019 * 16 14 12 18 18 H 1.48499 * 109.47139 * 210.00173 * 16 14 12 19 19 H 1.48505 * 109.47124 * 330.00061 * 16 14 12 20 20 C 1.37084 * 107.00078 * 0.26210 * 4 3 2 21 21 N 1.32560 * 108.03104 * 0.02562 * 20 4 3 22 22 H 1.08996 * 109.47092 * 89.99794 * 1 2 3 23 23 H 1.09002 * 109.46717 * 210.00247 * 1 2 3 24 24 H 1.09000 * 109.46639 * 330.00044 * 1 2 3 25 25 H 1.08002 * 126.41571 * 359.96922 * 3 2 1 26 26 H 1.07996 * 119.69634 * 359.95400 * 5 4 3 27 27 H 1.07991 * 119.85048 * 179.97438 * 6 5 4 28 28 H 1.07998 * 120.15205 * 180.02562 * 7 6 5 29 29 H 1.08997 * 109.47218 * 180.02562 * 11 9 8 30 30 H 1.08995 * 109.47255 * 300.00001 * 11 9 8 31 31 H 1.09000 * 109.46778 * 60.00061 * 11 9 8 32 32 H 0.97001 * 119.99646 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2952 1.0973 0.0000 4 7 3.5928 0.6630 0.0068 5 6 4.7873 1.3231 0.0148 6 6 5.9505 0.6389 0.0210 7 6 5.9464 -0.7659 0.0197 8 6 4.7629 -1.4362 0.0118 9 6 4.7417 -2.9430 0.0098 10 1 3.7090 -3.2919 0.0026 11 6 5.4481 -3.4648 1.2626 12 6 5.4523 -3.4539 -1.2171 13 1 5.8772 -2.7570 -1.9244 14 6 5.5609 -4.8108 -1.4360 15 7 5.0439 -5.6593 -0.5745 16 14 6.4424 -5.4439 -2.9564 17 1 7.8840 -5.6292 -2.6517 18 1 5.8520 -6.7435 -3.3658 19 1 6.2921 -4.4622 -4.0606 20 6 3.5567 -0.7074 0.0048 21 7 2.2859 -1.0844 -0.0034 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3632 0.8900 0.5138 25 1 1.9632 2.1251 -0.0005 26 1 4.8018 2.4030 0.0159 27 1 6.8887 1.1737 0.0269 28 1 6.8787 -1.3111 0.0251 29 1 5.4331 -4.5547 1.2609 30 1 6.4807 -3.1160 1.2693 31 1 4.9340 -3.0954 2.1499 32 1 5.1207 -6.6140 -0.7284 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260533587.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:14 Heat of formation + Delta-G solvation = 76.849126 kcal Electronic energy + Delta-G solvation = -15597.472255 eV Core-core repulsion = 13137.973912 eV Total energy + Delta-G solvation = -2459.498343 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.24542 -37.22491 -34.97526 -32.49572 -31.37870 -30.11892 -27.73271 -26.84984 -25.10801 -23.10117 -22.10842 -20.38712 -19.65668 -16.97695 -16.61581 -15.72308 -15.37097 -15.03002 -14.63334 -13.76710 -13.51483 -12.99499 -12.70254 -12.59959 -12.21910 -11.68775 -11.62819 -11.34595 -11.03229 -10.94458 -10.88480 -10.44123 -10.08218 -9.85247 -9.69976 -9.34855 -8.89133 -8.33177 -8.09205 -7.12728 -5.97361 -4.04410 1.41206 1.84001 3.12181 3.30476 3.31885 3.38736 3.42487 4.20362 4.46852 4.75195 4.84435 5.10811 5.33936 5.42800 5.54607 5.64189 5.71519 5.87998 5.97733 6.09181 6.27508 6.49773 6.65836 6.83496 6.98492 7.03093 7.12402 7.20666 7.33556 7.62912 7.74435 8.04231 8.10832 8.38896 8.49393 8.97127 9.59089 11.08498 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.028060 B = 0.008145 C = 0.007226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.605641 B = 3436.669924 C = 3874.010201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.047 3.953 3 C -0.123 4.123 4 N -0.357 5.357 5 C 0.005 3.995 6 C -0.119 4.119 7 C -0.134 4.134 8 C 0.017 3.983 9 C 0.077 3.923 10 H 0.053 0.947 11 C -0.130 4.130 12 C -0.507 4.507 13 H 0.056 0.944 14 C 0.063 3.937 15 N -0.886 5.886 16 Si 0.894 3.106 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.275 1.275 20 C 0.234 3.766 21 N -0.481 5.481 22 H 0.069 0.931 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.172 0.828 26 H 0.151 0.849 27 H 0.141 0.859 28 H 0.141 0.859 29 H 0.089 0.911 30 H 0.029 0.971 31 H 0.008 0.992 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.810 13.095 2.049 13.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.087 4.087 3 C -0.255 4.255 4 N -0.027 5.027 5 C -0.117 4.117 6 C -0.140 4.140 7 C -0.158 4.158 8 C 0.015 3.985 9 C 0.058 3.942 10 H 0.071 0.929 11 C -0.188 4.188 12 C -0.546 4.546 13 H 0.075 0.925 14 C -0.138 4.138 15 N -0.525 5.525 16 Si 0.721 3.279 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.200 1.200 20 C -0.009 4.009 21 N -0.201 5.201 22 H 0.088 0.912 23 H 0.091 0.909 24 H 0.085 0.915 25 H 0.189 0.811 26 H 0.168 0.832 27 H 0.159 0.841 28 H 0.159 0.841 29 H 0.107 0.893 30 H 0.048 0.952 31 H 0.027 0.973 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.152 12.164 2.072 12.525 hybrid contribution 0.830 0.680 -0.892 1.395 sum -1.322 12.844 1.180 12.966 Atomic orbital electron populations 1.20059 0.87564 1.02575 1.02277 1.20878 0.96622 0.88416 1.02825 1.22145 0.81258 1.00371 1.21691 1.42799 1.05715 1.09041 1.45163 1.21253 0.83369 0.97894 1.09211 1.20823 0.96635 0.95208 1.01341 1.20887 0.99025 0.92525 1.03353 1.20033 0.87112 0.99418 0.91985 1.17860 0.99128 0.82211 0.94968 0.92914 1.21802 0.97436 1.04556 0.94962 1.21068 1.35893 0.91586 1.06008 0.92527 1.24932 0.95556 0.96832 0.96498 1.69892 1.44944 1.02232 1.35409 0.86565 0.79650 0.78326 0.83309 1.20638 1.21162 1.19967 1.21102 0.94558 0.79706 1.05543 1.70700 0.98454 1.28585 1.22346 0.91234 0.90879 0.91458 0.81075 0.83173 0.84142 0.84082 0.89278 0.95235 0.97250 0.92894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.89 10.42 36.01 0.38 -0.52 16 2 C 0.05 0.86 7.06 -82.97 -0.59 0.28 16 3 C -0.12 -2.01 11.66 -16.43 -0.19 -2.21 16 4 N -0.36 -6.57 2.95 -62.66 -0.18 -6.76 16 5 C 0.00 0.07 10.95 -16.65 -0.18 -0.11 16 6 C -0.12 -1.81 9.99 -39.90 -0.40 -2.20 16 7 C -0.13 -2.58 8.73 -39.54 -0.35 -2.92 16 8 C 0.02 0.38 4.76 -104.40 -0.50 -0.11 16 9 C 0.08 2.02 2.50 -92.92 -0.23 1.79 16 10 H 0.05 1.56 7.73 -51.93 -0.40 1.16 16 11 C -0.13 -3.19 8.78 37.16 0.33 -2.87 16 12 C -0.51 -14.06 8.24 -34.44 -0.28 -14.34 16 13 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 14 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 15 N -0.89 -25.55 11.32 55.43 0.63 -24.93 16 16 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 C 0.23 5.24 7.52 -156.04 -1.17 4.07 16 21 N -0.48 -11.00 11.01 -9.00 -0.10 -11.10 16 22 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 23 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.17 2.04 8.06 -52.49 -0.42 1.62 16 26 H 0.15 1.61 8.06 -52.49 -0.42 1.19 16 27 H 0.14 1.55 8.06 -52.49 -0.42 1.12 16 28 H 0.14 2.63 7.57 -52.49 -0.40 2.23 16 29 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 30 H 0.03 0.66 7.40 -51.93 -0.38 0.28 16 31 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 273.46 15.07 4.12 4.12 Total: -1.00 -31.99 273.46 -7.83 -39.82 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -3.99 Total: -0.08 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: -3.28 Total: -17.48 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: 0.34 Total: -42.79 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.99 -7.83 -39.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260533587.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.673 kcal (2) G-P(sol) polarization free energy of solvation -31.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds