Wall clock time and date at job start Mon Mar 30 2020 03:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.35100 * 125.68480 * 2 1 4 4 N 1.36837 * 107.17740 * 179.69671 * 3 2 1 5 5 C 1.36481 * 132.57180 * 180.23723 * 4 3 2 6 6 C 1.34951 * 120.61643 * 180.02562 * 5 4 3 7 7 C 1.40477 * 120.29365 * 0.02562 * 6 5 4 8 8 C 1.36016 * 119.69518 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.33801 * 180.02562 * 8 7 6 10 10 H 1.08994 * 109.47774 * 179.97438 * 9 8 7 11 11 C 1.53004 * 109.47167 * 299.98465 * 9 8 7 12 12 C 1.50707 * 109.47013 * 59.98054 * 9 8 7 13 13 H 1.07995 * 119.99653 * 359.97438 * 12 9 8 14 14 C 1.37872 * 119.99973 * 180.02562 * 12 9 8 15 15 N 1.31508 * 120.00251 * 359.97438 * 14 12 9 16 16 Si 1.86801 * 119.99859 * 180.02562 * 14 12 9 17 17 H 1.48499 * 109.47354 * 59.99736 * 16 14 12 18 18 H 1.48502 * 109.47114 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47032 * 299.99832 * 16 14 12 20 20 C 1.37084 * 107.00078 * 0.26210 * 4 3 2 21 21 N 1.32560 * 108.03104 * 0.02562 * 20 4 3 22 22 H 1.08996 * 109.46711 * 90.00068 * 1 2 3 23 23 H 1.08997 * 109.46993 * 209.99918 * 1 2 3 24 24 H 1.09000 * 109.46831 * 330.00433 * 1 2 3 25 25 H 1.08002 * 126.41571 * 359.96454 * 3 2 1 26 26 H 1.08006 * 119.69052 * 0.03446 * 5 4 3 27 27 H 1.08001 * 119.85394 * 180.02562 * 6 5 4 28 28 H 1.08005 * 120.14851 * 179.97438 * 7 6 5 29 29 H 1.09000 * 109.46727 * 179.97438 * 11 9 8 30 30 H 1.09000 * 109.47043 * 299.99515 * 11 9 8 31 31 H 1.08994 * 109.47133 * 59.99807 * 11 9 8 32 32 H 0.97002 * 120.00236 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2952 1.0973 0.0000 4 7 3.5928 0.6630 0.0069 5 6 4.7873 1.3230 0.0142 6 6 5.9505 0.6389 0.0196 7 6 5.9464 -0.7659 0.0173 8 6 4.7629 -1.4362 0.0101 9 6 4.7416 -2.9431 0.0081 10 1 3.7090 -3.2919 0.0026 11 6 5.4620 -3.4617 -1.2381 12 6 5.4386 -3.4569 1.2416 13 1 5.8557 -2.7618 1.9552 14 6 5.5448 -4.8144 1.4584 15 7 5.0373 -5.6608 0.5892 16 14 6.4081 -5.4512 2.9876 17 1 5.7082 -4.9484 4.1969 18 1 6.3872 -6.9361 2.9856 19 1 7.8149 -4.9755 2.9962 20 6 3.5567 -0.7074 0.0050 21 7 2.2859 -1.0844 -0.0033 22 1 -0.3632 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.9632 2.1251 -0.0005 26 1 4.8018 2.4030 0.0157 27 1 6.8888 1.1737 0.0258 28 1 6.8788 -1.3111 0.0213 29 1 5.4469 -4.5516 -1.2392 30 1 4.9578 -3.0901 -2.1302 31 1 6.4946 -3.1130 -1.2324 32 1 5.1117 -6.6158 0.7419 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260533589.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:15 Heat of formation + Delta-G solvation = 76.900850 kcal Electronic energy + Delta-G solvation = -15597.579685 eV Core-core repulsion = 13138.083585 eV Total energy + Delta-G solvation = -2459.496100 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.24555 -37.22473 -34.97453 -32.49535 -31.37858 -30.11854 -27.73237 -26.84956 -25.10595 -23.10035 -22.10808 -20.38651 -19.65617 -16.97659 -16.61404 -15.72170 -15.36998 -15.02886 -14.63569 -13.76732 -13.51644 -12.99688 -12.69833 -12.59846 -12.21383 -11.68714 -11.62668 -11.34400 -11.03524 -10.94546 -10.86873 -10.46828 -10.07283 -9.85129 -9.69936 -9.34509 -8.90214 -8.32667 -8.09238 -7.12717 -5.97106 -4.04274 1.41238 1.84009 3.12127 3.30554 3.33652 3.38290 3.40974 4.20307 4.46911 4.75338 4.84435 5.10812 5.34075 5.42852 5.54770 5.64243 5.71570 5.87492 5.97804 6.09381 6.27719 6.49815 6.65915 6.83598 6.98550 7.03194 7.12437 7.20734 7.33633 7.62921 7.74343 8.04360 8.10872 8.39007 8.49400 8.97027 9.59148 11.08735 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.028030 B = 0.008149 C = 0.007229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.691653 B = 3435.195371 C = 3872.430033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.047 3.953 3 C -0.123 4.123 4 N -0.357 5.357 5 C 0.005 3.995 6 C -0.119 4.119 7 C -0.134 4.134 8 C 0.017 3.983 9 C 0.078 3.922 10 H 0.053 0.947 11 C -0.130 4.130 12 C -0.508 4.508 13 H 0.056 0.944 14 C 0.064 3.936 15 N -0.887 5.887 16 Si 0.894 3.106 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.234 3.766 21 N -0.481 5.481 22 H 0.068 0.932 23 H 0.073 0.927 24 H 0.067 0.933 25 H 0.172 0.828 26 H 0.151 0.849 27 H 0.141 0.859 28 H 0.141 0.859 29 H 0.089 0.911 30 H 0.008 0.992 31 H 0.029 0.971 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.784 13.083 -1.990 13.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.087 4.087 3 C -0.255 4.255 4 N -0.027 5.027 5 C -0.117 4.117 6 C -0.140 4.140 7 C -0.158 4.158 8 C 0.014 3.986 9 C 0.059 3.941 10 H 0.071 0.929 11 C -0.188 4.188 12 C -0.546 4.546 13 H 0.074 0.926 14 C -0.138 4.138 15 N -0.525 5.525 16 Si 0.722 3.278 17 H -0.203 1.203 18 H -0.212 1.212 19 H -0.202 1.202 20 C -0.009 4.009 21 N -0.201 5.201 22 H 0.087 0.913 23 H 0.092 0.908 24 H 0.086 0.914 25 H 0.189 0.811 26 H 0.168 0.832 27 H 0.159 0.841 28 H 0.159 0.841 29 H 0.107 0.893 30 H 0.027 0.973 31 H 0.048 0.952 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.123 12.147 -2.030 12.497 hybrid contribution 0.814 0.690 0.894 1.392 sum -1.309 12.837 -1.135 12.953 Atomic orbital electron populations 1.20059 0.87565 1.02665 1.02194 1.20877 0.96623 0.88415 1.02823 1.22145 0.81257 1.00371 1.21691 1.42798 1.05714 1.09042 1.45167 1.21252 0.83367 0.97895 1.09212 1.20824 0.96636 0.95209 1.01341 1.20889 0.99035 0.92524 1.03340 1.20034 0.87108 0.99417 0.91994 1.17854 0.99082 0.82206 0.94985 0.92924 1.21803 0.97446 1.04550 0.94959 1.21028 1.36587 0.91567 1.05453 0.92579 1.24928 0.95537 0.96830 0.96490 1.69878 1.45138 1.02341 1.35132 0.86628 0.80023 0.77663 0.83515 1.20310 1.21217 1.20239 1.21102 0.94559 0.79707 1.05542 1.70701 0.98453 1.28585 1.22348 0.91288 0.90834 0.91444 0.81075 0.83174 0.84142 0.84080 0.89279 0.97255 0.95232 0.92830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.89 10.42 36.01 0.38 -0.52 16 2 C 0.05 0.86 7.06 -82.97 -0.59 0.28 16 3 C -0.12 -2.01 11.66 -16.43 -0.19 -2.21 16 4 N -0.36 -6.57 2.95 -62.66 -0.18 -6.76 16 5 C 0.00 0.07 10.95 -16.65 -0.18 -0.11 16 6 C -0.12 -1.81 9.99 -39.91 -0.40 -2.21 16 7 C -0.13 -2.58 8.73 -39.54 -0.35 -2.92 16 8 C 0.02 0.38 4.76 -104.40 -0.50 -0.11 16 9 C 0.08 2.03 2.50 -92.92 -0.23 1.80 16 10 H 0.05 1.55 7.73 -51.93 -0.40 1.15 16 11 C -0.13 -3.19 8.78 37.16 0.33 -2.87 16 12 C -0.51 -14.08 8.24 -34.44 -0.28 -14.36 16 13 H 0.06 1.53 7.60 -52.49 -0.40 1.13 16 14 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 15 N -0.89 -25.57 11.32 55.43 0.63 -24.94 16 16 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 20 C 0.23 5.24 7.52 -156.04 -1.17 4.07 16 21 N -0.48 -11.01 11.01 -9.00 -0.10 -11.11 16 22 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 24 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.17 2.04 8.06 -52.49 -0.42 1.62 16 26 H 0.15 1.61 8.06 -52.48 -0.42 1.19 16 27 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 28 H 0.14 2.64 7.57 -52.48 -0.40 2.24 16 29 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 30 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.03 0.66 7.40 -51.93 -0.38 0.28 16 32 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 273.46 15.07 4.12 4.12 Total: -1.00 -31.96 273.46 -7.83 -39.79 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -3.99 Total: -0.02 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: -3.28 Total: -17.49 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: 0.34 Total: -42.80 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.96 -7.83 -39.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260533589.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.690 kcal (2) G-P(sol) polarization free energy of solvation -31.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds