Wall clock time and date at job start Mon Mar 30 2020 03:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.35100 * 125.68480 * 2 1 4 4 N 1.36837 * 107.17740 * 179.69671 * 3 2 1 5 5 C 1.36481 * 132.57180 * 180.23723 * 4 3 2 6 6 C 1.34951 * 120.61643 * 180.02562 * 5 4 3 7 7 C 1.40477 * 120.29365 * 0.02562 * 6 5 4 8 8 C 1.36016 * 119.69518 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.33801 * 180.02562 * 8 7 6 10 10 H 1.08994 * 109.47774 * 179.97438 * 9 8 7 11 11 C 1.53004 * 109.47167 * 299.98465 * 9 8 7 12 12 C 1.50707 * 109.47013 * 59.98054 * 9 8 7 13 13 H 1.07995 * 119.99653 * 359.97438 * 12 9 8 14 14 C 1.37872 * 119.99973 * 180.02562 * 12 9 8 15 15 N 1.31508 * 120.00251 * 359.97438 * 14 12 9 16 16 Si 1.86801 * 119.99859 * 180.02562 * 14 12 9 17 17 H 1.48499 * 109.47354 * 59.99736 * 16 14 12 18 18 H 1.48502 * 109.47114 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47032 * 299.99832 * 16 14 12 20 20 C 1.37084 * 107.00078 * 0.26210 * 4 3 2 21 21 N 1.32560 * 108.03104 * 0.02562 * 20 4 3 22 22 H 1.08996 * 109.46711 * 90.00068 * 1 2 3 23 23 H 1.08997 * 109.46993 * 209.99918 * 1 2 3 24 24 H 1.09000 * 109.46831 * 330.00433 * 1 2 3 25 25 H 1.08002 * 126.41571 * 359.96454 * 3 2 1 26 26 H 1.08006 * 119.69052 * 0.03446 * 5 4 3 27 27 H 1.08001 * 119.85394 * 180.02562 * 6 5 4 28 28 H 1.08005 * 120.14851 * 179.97438 * 7 6 5 29 29 H 1.09000 * 109.46727 * 179.97438 * 11 9 8 30 30 H 1.09000 * 109.47043 * 299.99515 * 11 9 8 31 31 H 1.08994 * 109.47133 * 59.99807 * 11 9 8 32 32 H 0.97002 * 120.00236 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2952 1.0973 0.0000 4 7 3.5928 0.6630 0.0069 5 6 4.7873 1.3230 0.0142 6 6 5.9505 0.6389 0.0196 7 6 5.9464 -0.7659 0.0173 8 6 4.7629 -1.4362 0.0101 9 6 4.7416 -2.9431 0.0081 10 1 3.7090 -3.2919 0.0026 11 6 5.4620 -3.4617 -1.2381 12 6 5.4386 -3.4569 1.2416 13 1 5.8557 -2.7618 1.9552 14 6 5.5448 -4.8144 1.4584 15 7 5.0373 -5.6608 0.5892 16 14 6.4081 -5.4512 2.9876 17 1 5.7082 -4.9484 4.1969 18 1 6.3872 -6.9361 2.9856 19 1 7.8149 -4.9755 2.9962 20 6 3.5567 -0.7074 0.0050 21 7 2.2859 -1.0844 -0.0033 22 1 -0.3632 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.9632 2.1251 -0.0005 26 1 4.8018 2.4030 0.0157 27 1 6.8888 1.1737 0.0258 28 1 6.8788 -1.3111 0.0213 29 1 5.4469 -4.5516 -1.2392 30 1 4.9578 -3.0901 -2.1302 31 1 6.4946 -3.1130 -1.2324 32 1 5.1117 -6.6158 0.7419 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260533589.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:15 Heat of formation + Delta-G solvation = 58.127094 kcal Electronic energy + Delta-G solvation = -15598.393776 eV Core-core repulsion = 13138.083585 eV Total energy + Delta-G solvation = -2460.310191 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.61639 -38.67107 -36.68743 -34.30502 -32.69021 -31.80954 -29.26960 -28.08155 -27.23491 -24.65767 -23.53085 -21.94211 -21.16848 -18.46687 -18.34896 -17.35934 -16.79721 -16.72254 -16.14049 -15.25579 -14.96843 -14.58033 -14.07258 -13.85235 -13.57393 -13.53153 -13.05767 -12.95102 -12.86465 -12.78461 -12.30062 -12.25927 -12.08331 -11.53988 -11.50252 -10.92740 -10.82019 -10.45927 -9.43789 -8.54732 -8.08485 -6.24655 0.06504 0.45338 1.40726 1.43538 1.50984 1.84812 2.01426 2.42074 2.76078 3.17944 3.46560 3.63073 3.97828 4.15542 4.34773 4.42185 4.50677 4.65402 4.86081 4.87193 4.93973 5.03451 5.08367 5.17218 5.23424 5.28955 5.46316 5.61630 5.73268 5.85134 6.02584 6.04146 6.27797 6.37217 6.83481 7.11895 7.42549 8.95914 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.028030 B = 0.008149 C = 0.007229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.691653 B = 3435.195371 C = 3872.430033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.019 3.981 3 C -0.104 4.104 4 N -0.362 5.362 5 C 0.022 3.978 6 C -0.125 4.125 7 C -0.119 4.119 8 C -0.039 4.039 9 C 0.084 3.916 10 H -0.002 1.002 11 C -0.117 4.117 12 C -0.522 4.522 13 H 0.054 0.946 14 C 0.012 3.988 15 N -0.918 5.918 16 Si 0.960 3.040 17 H -0.278 1.278 18 H -0.282 1.282 19 H -0.261 1.261 20 C 0.198 3.802 21 N -0.544 5.544 22 H 0.081 0.919 23 H 0.056 0.944 24 H 0.104 0.896 25 H 0.225 0.775 26 H 0.209 0.791 27 H 0.192 0.808 28 H 0.139 0.861 29 H 0.061 0.939 30 H 0.014 0.986 31 H 0.044 0.956 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.821 16.722 -1.388 16.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.114 4.114 3 C -0.234 4.234 4 N -0.032 5.032 5 C -0.098 4.098 6 C -0.144 4.144 7 C -0.143 4.143 8 C -0.041 4.041 9 C 0.064 3.936 10 H 0.016 0.984 11 C -0.175 4.175 12 C -0.560 4.560 13 H 0.072 0.928 14 C -0.187 4.187 15 N -0.557 5.557 16 Si 0.785 3.215 17 H -0.204 1.204 18 H -0.208 1.208 19 H -0.186 1.186 20 C -0.045 4.045 21 N -0.266 5.266 22 H 0.100 0.900 23 H 0.075 0.925 24 H 0.123 0.877 25 H 0.242 0.758 26 H 0.225 0.775 27 H 0.209 0.791 28 H 0.157 0.843 29 H 0.080 0.920 30 H 0.033 0.967 31 H 0.063 0.937 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.162 15.803 -1.432 15.911 hybrid contribution 0.461 -0.310 0.675 0.874 sum -0.701 15.493 -0.758 15.527 Atomic orbital electron populations 1.20186 0.84849 1.03679 1.03344 1.21730 0.98637 0.88124 1.02947 1.22958 0.80008 1.01946 1.18536 1.43098 1.07530 1.07766 1.44845 1.22281 0.81910 1.00372 1.05282 1.21284 0.99127 0.93109 1.00920 1.21093 0.97437 0.94946 1.00855 1.19686 0.89210 0.97530 0.97674 1.17515 0.95564 0.85557 0.94915 0.98394 1.21618 0.98256 1.02592 0.95012 1.21330 1.36556 0.91927 1.06164 0.92780 1.25788 0.96277 0.97084 0.99526 1.70036 1.46283 1.02483 1.36933 0.85591 0.79451 0.77085 0.79416 1.20354 1.20759 1.18596 1.20982 0.94177 0.81843 1.07476 1.70625 0.99867 1.31593 1.24468 0.89991 0.92457 0.87737 0.75820 0.77476 0.79131 0.84317 0.92011 0.96699 0.93724 0.92865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.61 10.42 71.24 0.74 -0.86 16 2 C 0.02 0.67 7.06 41.58 0.29 0.96 16 3 C -0.10 -3.05 11.66 83.19 0.97 -2.08 16 4 N -0.36 -12.41 2.95 -352.16 -1.04 -13.44 16 5 C 0.02 0.56 10.95 83.21 0.91 1.47 16 6 C -0.12 -3.26 9.99 22.06 0.22 -3.04 16 7 C -0.12 -4.48 8.73 22.30 0.19 -4.29 16 8 C -0.04 -1.82 4.76 -19.72 -0.09 -1.92 16 9 C 0.08 4.65 2.50 -12.28 -0.03 4.62 16 10 H 0.00 -0.14 7.73 -2.39 -0.02 -0.16 16 11 C -0.12 -6.08 8.78 71.98 0.63 -5.44 16 12 C -0.52 -30.13 8.24 25.60 0.21 -29.92 16 13 H 0.05 3.05 7.60 -2.91 -0.02 3.02 16 14 C 0.01 0.68 5.30 84.65 0.45 1.13 16 15 N -0.92 -55.47 11.32 21.44 0.24 -55.22 16 16 Si 0.96 44.82 29.54 68.60 2.03 46.84 16 17 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 18 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 19 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 20 C 0.20 9.05 7.52 134.10 1.01 10.06 16 21 N -0.54 -25.99 11.01 -182.40 -2.01 -27.99 16 22 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 23 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.23 3.95 8.06 -2.91 -0.02 3.93 16 26 H 0.21 2.83 8.06 -2.91 -0.02 2.80 16 27 H 0.19 3.03 8.06 -2.91 -0.02 3.00 16 28 H 0.14 5.11 7.57 -2.91 -0.02 5.08 16 29 H 0.06 3.51 6.07 -2.39 -0.01 3.49 16 30 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.04 2.09 7.40 -2.39 -0.02 2.08 16 32 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -76.73 273.46 5.84 -70.89 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: 1.11 Total: 8.24 kcal Atomic # 6 Polarization: -34.82 SS G_CDS: 5.51 Total: -29.31 kcal Atomic # 7 Polarization: -93.86 SS G_CDS: -2.80 Total: -96.66 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -76.73 5.84 -70.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260533589.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.018 kcal (2) G-P(sol) polarization free energy of solvation -76.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds