Wall clock time and date at job start Mon Mar 30 2020 03:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36068 * 120.38764 * 2 1 4 4 C 1.40471 * 119.59140 * 180.02562 * 3 2 1 5 5 C 1.34929 * 120.43362 * 0.02562 * 4 3 2 6 6 N 1.36538 * 120.65931 * 359.95887 * 5 4 3 7 7 N 1.40042 * 132.43404 * 180.02562 * 6 5 4 8 8 C 1.31485 * 108.91429 * 180.02562 * 7 6 5 9 9 C 1.50703 * 125.49699 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.46967 * 335.02596 * 9 8 7 11 11 C 1.52994 * 109.47082 * 215.02120 * 9 8 7 12 12 C 1.50702 * 109.47040 * 95.02224 * 9 8 7 13 13 H 1.08006 * 119.99959 * 5.42073 * 12 9 8 14 14 C 1.37873 * 119.99942 * 185.14805 * 12 9 8 15 15 N 1.31520 * 120.00106 * 355.40640 * 14 12 9 16 16 Si 1.86803 * 120.00337 * 175.41008 * 14 12 9 17 17 H 1.48495 * 109.47019 * 94.99502 * 16 14 12 18 18 H 1.48497 * 109.47047 * 215.00112 * 16 14 12 19 19 H 1.48506 * 109.46797 * 334.99653 * 16 14 12 20 20 C 1.38543 * 109.00872 * 0.24100 * 8 7 6 21 21 C 1.37135 * 120.12053 * 0.03772 * 6 5 4 22 22 H 1.08997 * 109.47171 * 269.97807 * 1 2 3 23 23 H 1.09000 * 109.47033 * 29.98252 * 1 2 3 24 24 H 1.09007 * 109.46764 * 149.97826 * 1 2 3 25 25 H 1.07999 * 120.20083 * 0.03794 * 3 2 1 26 26 H 1.08003 * 119.78192 * 179.97438 * 4 3 2 27 27 H 1.08002 * 119.66772 * 180.02562 * 5 4 3 28 28 H 1.09003 * 109.46859 * 54.92134 * 11 9 8 29 29 H 1.09007 * 109.47234 * 174.91745 * 11 9 8 30 30 H 1.08998 * 109.47646 * 294.91962 * 11 9 8 31 31 H 0.96996 * 120.00002 * 180.02562 * 15 14 12 32 32 H 1.08000 * 126.22023 * 179.75796 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1738 0.0000 4 6 3.5998 1.1542 -0.0005 5 6 4.2671 -0.0185 -0.0016 6 7 3.5905 -1.2045 -0.0013 7 7 4.0201 -2.5374 -0.0017 8 6 2.9669 -3.3246 -0.0017 9 6 3.0006 -4.8313 -0.0026 10 1 3.9399 -5.1734 -0.4371 11 6 1.8306 -5.3670 -0.8301 12 6 2.8881 -5.3371 1.4126 13 1 2.7132 -4.6434 2.2217 14 6 3.0029 -6.6860 1.6737 15 7 3.1200 -7.5404 0.6807 16 14 2.9920 -7.3002 3.4378 17 1 1.6135 -7.7059 3.8121 18 1 3.9023 -8.4669 3.5613 19 1 3.4517 -6.2158 4.3423 20 6 1.8213 -2.5456 -0.0068 21 6 2.2192 -1.2145 -0.0007 22 1 -0.3633 -0.0004 1.0276 23 1 -0.3633 0.8901 -0.5136 24 1 -0.3633 -0.8899 -0.5142 25 1 1.6649 2.1145 0.0006 26 1 4.1493 2.0841 -0.0010 27 1 5.3471 -0.0191 -0.0016 28 1 1.8614 -4.9299 -1.8282 29 1 1.9060 -6.4518 -0.9062 30 1 0.8911 -5.1011 -0.3458 31 1 3.2004 -8.4894 0.8644 32 1 0.8036 -2.9073 -0.0117 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260547758.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:19 Heat of formation + Delta-G solvation = 88.961521 kcal Electronic energy + Delta-G solvation = -15391.199407 eV Core-core repulsion = 12932.226297 eV Total energy + Delta-G solvation = -2458.973110 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.41870 -37.17851 -34.36124 -33.44898 -31.18275 -29.27991 -28.50197 -26.58758 -25.13493 -22.86655 -22.14205 -21.08570 -18.88374 -16.95836 -16.27338 -16.09975 -15.22252 -15.01663 -14.48395 -13.88358 -13.37791 -13.17823 -12.77555 -12.63002 -12.37932 -11.70960 -11.43127 -11.31838 -11.18437 -10.93551 -10.66769 -10.44506 -10.25129 -9.91800 -9.75358 -9.61463 -9.13490 -8.38380 -8.35903 -6.99688 -6.02201 -4.07024 1.10529 1.58449 2.86874 3.31484 3.37908 3.42382 3.54304 3.78230 4.45954 4.66534 4.84129 5.05560 5.11876 5.26690 5.30644 5.58204 5.67937 5.80672 5.97601 6.12435 6.17413 6.28341 6.50464 6.60262 6.78988 6.87148 6.99739 7.13351 7.38932 7.51806 7.67020 7.84514 8.03204 8.33177 8.46114 8.93853 9.56490 11.05174 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.036509 B = 0.006624 C = 0.006475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.745649 B = 4225.801155 C = 4323.465306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.078 4.078 3 C -0.104 4.104 4 C -0.185 4.185 5 C 0.115 3.885 6 N -0.287 5.287 7 N -0.328 5.328 8 C 0.156 3.844 9 C 0.109 3.891 10 H 0.047 0.953 11 C -0.126 4.126 12 C -0.504 4.504 13 H 0.056 0.944 14 C 0.064 3.936 15 N -0.889 5.889 16 Si 0.896 3.104 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.274 1.274 20 C -0.268 4.268 21 C 0.085 3.915 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.131 0.869 26 H 0.144 0.856 27 H 0.159 0.841 28 H 0.011 0.989 29 H 0.083 0.917 30 H 0.035 0.965 31 H 0.262 0.738 32 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.299 15.189 -2.141 15.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.081 4.081 3 C -0.127 4.127 4 C -0.207 4.207 5 C -0.012 4.012 6 N -0.053 5.053 7 N -0.151 5.151 8 C -0.001 4.001 9 C 0.088 3.912 10 H 0.065 0.935 11 C -0.185 4.185 12 C -0.543 4.543 13 H 0.075 0.925 14 C -0.137 4.137 15 N -0.527 5.527 16 Si 0.724 3.276 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.199 1.199 20 C -0.296 4.296 21 C -0.033 4.033 22 H 0.091 0.909 23 H 0.086 0.914 24 H 0.091 0.909 25 H 0.148 0.852 26 H 0.162 0.838 27 H 0.176 0.824 28 H 0.031 0.969 29 H 0.101 0.899 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.936 14.904 -2.182 15.186 hybrid contribution -0.727 -0.267 1.023 1.283 sum -2.663 14.636 -1.159 14.922 Atomic orbital electron populations 1.20652 0.89898 1.02972 1.02583 1.19268 0.96526 0.90225 1.02036 1.20838 0.93773 0.97527 1.00584 1.20563 0.94737 0.96632 1.08781 1.21342 0.98632 0.81981 0.99205 1.46434 1.05306 1.06175 1.47382 1.77998 1.21825 0.82146 1.33106 1.23324 0.88953 0.98785 0.89041 1.17491 0.96935 0.79568 0.97174 0.93510 1.21749 0.97881 1.03401 0.95423 1.20907 1.49797 0.92206 0.91389 0.92538 1.24907 0.94936 0.96608 0.97282 1.69912 1.49857 1.02400 1.30578 0.86506 0.77881 0.78412 0.84818 1.20644 1.21058 1.19899 1.21291 1.00348 0.88680 1.19328 1.19446 0.84273 0.95502 1.04046 0.90912 0.91407 0.90922 0.85159 0.83789 0.82373 0.96946 0.89856 0.94618 0.92830 0.83374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.19 9.94 36.00 0.36 -0.83 16 2 C -0.08 -1.16 5.90 -104.44 -0.62 -1.77 16 3 C -0.10 -1.27 9.73 -39.52 -0.38 -1.66 16 4 C -0.18 -2.20 9.98 -39.92 -0.40 -2.60 16 5 C 0.11 1.73 11.19 -16.63 -0.19 1.54 16 6 N -0.29 -5.73 3.90 -10.71 -0.04 -5.77 16 7 N -0.33 -7.81 12.66 33.51 0.42 -7.38 16 8 C 0.16 3.80 6.02 -82.63 -0.50 3.31 16 9 C 0.11 2.88 2.70 -92.92 -0.25 2.63 16 10 H 0.05 1.34 8.14 -51.93 -0.42 0.92 16 11 C -0.13 -3.05 8.42 37.15 0.31 -2.74 16 12 C -0.50 -14.29 8.48 -34.44 -0.29 -14.58 16 13 H 0.06 1.63 7.75 -52.48 -0.41 1.22 16 14 C 0.06 1.80 5.36 -17.82 -0.10 1.71 16 15 N -0.89 -25.43 11.59 55.43 0.64 -24.79 16 16 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 20 C -0.27 -5.71 9.63 -39.21 -0.38 -6.09 16 21 C 0.08 1.62 6.67 -84.27 -0.56 1.06 16 22 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 23 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 24 H 0.07 0.86 7.80 -51.92 -0.41 0.46 16 25 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 26 H 0.14 1.17 8.06 -52.48 -0.42 0.74 16 27 H 0.16 1.95 8.06 -52.49 -0.42 1.53 16 28 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.08 2.17 6.45 -51.93 -0.33 1.83 16 30 H 0.03 0.81 7.52 -51.93 -0.39 0.42 16 31 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.15 2.91 7.47 -52.49 -0.39 2.52 16 LS Contribution 275.00 15.07 4.14 4.14 Total: -1.00 -31.72 275.00 -6.86 -38.58 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -4.02 Total: -1.36 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: -2.99 Total: -20.04 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 1.02 Total: -37.94 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.72 -6.86 -38.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260547758.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.541 kcal (2) G-P(sol) polarization free energy of solvation -31.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds