Wall clock time and date at job start Mon Mar 30 2020 03:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36068 * 120.38764 * 2 1 4 4 C 1.40471 * 119.59140 * 180.02562 * 3 2 1 5 5 C 1.34929 * 120.43362 * 0.02562 * 4 3 2 6 6 N 1.36538 * 120.65931 * 359.95887 * 5 4 3 7 7 N 1.40042 * 132.43404 * 180.02562 * 6 5 4 8 8 C 1.31485 * 108.91429 * 180.02562 * 7 6 5 9 9 C 1.50703 * 125.49699 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.46967 * 335.02596 * 9 8 7 11 11 C 1.52994 * 109.47082 * 215.02120 * 9 8 7 12 12 C 1.50702 * 109.47040 * 95.02224 * 9 8 7 13 13 H 1.08006 * 119.99959 * 5.42073 * 12 9 8 14 14 C 1.37873 * 119.99942 * 185.14805 * 12 9 8 15 15 N 1.31520 * 120.00106 * 355.40640 * 14 12 9 16 16 Si 1.86803 * 120.00337 * 175.41008 * 14 12 9 17 17 H 1.48495 * 109.47019 * 94.99502 * 16 14 12 18 18 H 1.48497 * 109.47047 * 215.00112 * 16 14 12 19 19 H 1.48506 * 109.46797 * 334.99653 * 16 14 12 20 20 C 1.38543 * 109.00872 * 0.24100 * 8 7 6 21 21 C 1.37135 * 120.12053 * 0.03772 * 6 5 4 22 22 H 1.08997 * 109.47171 * 269.97807 * 1 2 3 23 23 H 1.09000 * 109.47033 * 29.98252 * 1 2 3 24 24 H 1.09007 * 109.46764 * 149.97826 * 1 2 3 25 25 H 1.07999 * 120.20083 * 0.03794 * 3 2 1 26 26 H 1.08003 * 119.78192 * 179.97438 * 4 3 2 27 27 H 1.08002 * 119.66772 * 180.02562 * 5 4 3 28 28 H 1.09003 * 109.46859 * 54.92134 * 11 9 8 29 29 H 1.09007 * 109.47234 * 174.91745 * 11 9 8 30 30 H 1.08998 * 109.47646 * 294.91962 * 11 9 8 31 31 H 0.96996 * 120.00002 * 180.02562 * 15 14 12 32 32 H 1.08000 * 126.22023 * 179.75796 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1738 0.0000 4 6 3.5998 1.1542 -0.0005 5 6 4.2671 -0.0185 -0.0016 6 7 3.5905 -1.2045 -0.0013 7 7 4.0201 -2.5374 -0.0017 8 6 2.9669 -3.3246 -0.0017 9 6 3.0006 -4.8313 -0.0026 10 1 3.9399 -5.1734 -0.4371 11 6 1.8306 -5.3670 -0.8301 12 6 2.8881 -5.3371 1.4126 13 1 2.7132 -4.6434 2.2217 14 6 3.0029 -6.6860 1.6737 15 7 3.1200 -7.5404 0.6807 16 14 2.9920 -7.3002 3.4378 17 1 1.6135 -7.7059 3.8121 18 1 3.9023 -8.4669 3.5613 19 1 3.4517 -6.2158 4.3423 20 6 1.8213 -2.5456 -0.0068 21 6 2.2192 -1.2145 -0.0007 22 1 -0.3633 -0.0004 1.0276 23 1 -0.3633 0.8901 -0.5136 24 1 -0.3633 -0.8899 -0.5142 25 1 1.6649 2.1145 0.0006 26 1 4.1493 2.0841 -0.0010 27 1 5.3471 -0.0191 -0.0016 28 1 1.8614 -4.9299 -1.8282 29 1 1.9060 -6.4518 -0.9062 30 1 0.8911 -5.1011 -0.3458 31 1 3.2004 -8.4894 0.8644 32 1 0.8036 -2.9073 -0.0117 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260547758.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:19 Heat of formation + Delta-G solvation = 69.779773 kcal Electronic energy + Delta-G solvation = -15392.031190 eV Core-core repulsion = 12932.226297 eV Total energy + Delta-G solvation = -2459.804893 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.84306 -38.55352 -36.15263 -34.81086 -33.02312 -30.87276 -29.84480 -27.72112 -27.26477 -24.53322 -23.50700 -22.45833 -20.60282 -18.46572 -18.16925 -17.46985 -16.71305 -16.47181 -16.10898 -15.08142 -14.94389 -14.80764 -14.09705 -14.01260 -13.52076 -13.43508 -13.09250 -12.84814 -12.71224 -12.42112 -12.35000 -12.22656 -12.20097 -11.78771 -11.38877 -11.15406 -10.94546 -10.52330 -9.98441 -8.37815 -8.15668 -6.29900 -0.04725 0.28514 1.38527 1.40147 1.50411 1.54011 1.91156 2.42721 2.53790 3.11771 3.42653 3.71718 3.98597 4.06509 4.10522 4.55274 4.64981 4.76797 4.83872 4.86161 4.89531 4.91968 5.03142 5.12205 5.15471 5.25307 5.41762 5.48870 5.64486 5.75854 5.80690 5.95310 6.16691 6.24374 6.74075 6.84007 7.36829 8.90398 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.036509 B = 0.006624 C = 0.006475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.745649 B = 4225.801155 C = 4323.465306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.099 4.099 3 C -0.081 4.081 4 C -0.146 4.146 5 C 0.069 3.931 6 N -0.289 5.289 7 N -0.380 5.380 8 C 0.127 3.873 9 C 0.110 3.890 10 H 0.005 0.995 11 C -0.109 4.109 12 C -0.525 4.525 13 H 0.041 0.959 14 C 0.019 3.981 15 N -0.913 5.913 16 Si 0.962 3.038 17 H -0.267 1.267 18 H -0.276 1.276 19 H -0.277 1.277 20 C -0.304 4.304 21 C 0.088 3.912 22 H 0.080 0.920 23 H 0.103 0.897 24 H 0.059 0.941 25 H 0.183 0.817 26 H 0.198 0.802 27 H 0.177 0.823 28 H 0.027 0.973 29 H 0.061 0.939 30 H 0.042 0.958 31 H 0.266 0.734 32 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.208 18.980 -1.500 19.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.101 4.101 3 C -0.104 4.104 4 C -0.167 4.167 5 C -0.056 4.056 6 N -0.055 5.055 7 N -0.205 5.205 8 C -0.028 4.028 9 C 0.090 3.910 10 H 0.023 0.977 11 C -0.168 4.168 12 C -0.563 4.563 13 H 0.060 0.940 14 C -0.180 4.180 15 N -0.552 5.552 16 Si 0.786 3.214 17 H -0.192 1.192 18 H -0.201 1.201 19 H -0.202 1.202 20 C -0.333 4.333 21 C -0.031 4.031 22 H 0.098 0.902 23 H 0.121 0.879 24 H 0.078 0.922 25 H 0.200 0.800 26 H 0.215 0.785 27 H 0.194 0.806 28 H 0.046 0.954 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.843 18.689 -1.550 18.967 hybrid contribution -0.395 -1.078 0.782 1.389 sum -3.238 17.611 -0.767 17.922 Atomic orbital electron populations 1.20729 0.87619 1.04140 1.03400 1.19766 0.98310 0.89217 1.02824 1.21553 0.94009 0.98487 0.96335 1.21343 0.95122 0.97096 1.03129 1.22154 1.00262 0.81385 1.01801 1.46591 1.06146 1.06074 1.46644 1.77778 1.22510 0.84331 1.35893 1.22900 0.90601 0.97754 0.91570 1.17253 0.95454 0.81996 0.96344 0.97660 1.21524 0.97433 1.01738 0.96068 1.21074 1.50633 0.92569 0.92049 0.94025 1.25703 0.94297 0.96550 1.01493 1.70024 1.49970 1.02727 1.32482 0.85493 0.78544 0.77718 0.79604 1.19224 1.20119 1.20193 1.21254 0.99639 0.89798 1.22584 1.19949 0.84328 0.96312 1.02532 0.90190 0.87852 0.92211 0.79979 0.78464 0.80573 0.95393 0.92001 0.93938 0.92456 0.83112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.99 9.94 71.24 0.71 -1.28 16 2 C -0.10 -2.60 5.90 -19.74 -0.12 -2.71 16 3 C -0.08 -1.48 9.73 22.31 0.22 -1.26 16 4 C -0.15 -2.64 9.98 22.05 0.22 -2.42 16 5 C 0.07 1.90 11.19 83.20 0.93 2.83 16 6 N -0.29 -11.57 3.90 -187.78 -0.73 -12.30 16 7 N -0.38 -19.17 12.66 -47.88 -0.61 -19.78 16 8 C 0.13 6.58 6.02 42.68 0.26 6.84 16 9 C 0.11 6.26 2.70 -12.29 -0.03 6.22 16 10 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 11 C -0.11 -5.61 8.42 71.98 0.61 -5.01 16 12 C -0.52 -31.44 8.48 25.60 0.22 -31.22 16 13 H 0.04 2.54 7.75 -2.91 -0.02 2.52 16 14 C 0.02 1.10 5.36 84.65 0.45 1.56 16 15 N -0.91 -54.23 11.59 21.45 0.25 -53.98 16 16 Si 0.96 45.47 29.54 68.60 2.03 47.50 16 17 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 19 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 20 C -0.30 -13.58 9.63 22.51 0.22 -13.37 16 21 C 0.09 3.35 6.67 39.11 0.26 3.61 16 22 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.10 1.27 8.09 -2.39 -0.02 1.25 16 24 H 0.06 1.33 7.80 -2.38 -0.02 1.31 16 25 H 0.18 1.59 8.06 -2.91 -0.02 1.57 16 26 H 0.20 1.58 8.06 -2.91 -0.02 1.56 16 27 H 0.18 4.04 8.06 -2.91 -0.02 4.02 16 28 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.06 3.40 6.45 -2.38 -0.02 3.38 16 30 H 0.04 2.05 7.52 -2.39 -0.02 2.04 16 31 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 32 H 0.15 6.28 7.47 -2.91 -0.02 6.26 16 Total: -1.00 -75.38 275.00 5.98 -69.40 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: 1.11 Total: 5.37 kcal Atomic # 6 Polarization: -40.15 SS G_CDS: 3.94 Total: -36.21 kcal Atomic # 7 Polarization: -84.97 SS G_CDS: -1.09 Total: -86.06 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -75.38 5.98 -69.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260547758.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.178 kcal (2) G-P(sol) polarization free energy of solvation -75.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds