Wall clock time and date at job start Mon Mar 30 2020 02:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35690 * 116.99945 * 2 1 4 4 C 1.38509 * 120.26246 * 359.97401 * 3 2 1 5 5 C 1.38256 * 120.14814 * 180.38525 * 4 3 2 6 6 C 1.38745 * 120.60062 * 0.52850 * 5 4 3 7 7 C 1.37594 * 120.26320 * 359.86346 * 6 5 4 8 8 C 1.40298 * 119.80367 * 358.86107 * 7 6 5 9 9 C 1.41676 * 119.84630 * 182.35504 * 8 7 6 10 10 C 1.38133 * 119.93153 * 15.58115 * 9 8 7 11 11 C 1.38773 * 119.71414 * 182.08159 * 10 9 8 12 12 H 1.08002 * 119.99949 * 23.48818 * 11 10 9 13 13 C 1.40600 * 120.00273 * 203.48929 * 11 10 9 14 14 N 1.30581 * 119.99965 * 11.10398 * 13 11 10 15 15 Si 1.86802 * 120.00228 * 191.11113 * 13 11 10 16 16 H 1.48502 * 109.47193 * 89.99496 * 15 13 11 17 17 H 1.48499 * 109.47103 * 209.99735 * 15 13 11 18 18 H 1.48501 * 109.46887 * 329.99574 * 15 13 11 19 19 C 1.50507 * 120.58241 * 1.87593 * 10 9 8 20 20 C 1.50614 * 120.25885 * 178.26763 * 7 6 5 21 21 H 1.08992 * 109.46603 * 300.00156 * 1 2 3 22 22 H 1.08998 * 109.46666 * 60.00096 * 1 2 3 23 23 H 1.08994 * 109.46877 * 179.97438 * 1 2 3 24 24 H 1.08006 * 119.93040 * 0.37058 * 4 3 2 25 25 H 1.08007 * 119.70045 * 180.54801 * 5 4 3 26 26 H 1.08005 * 119.86792 * 179.84682 * 6 5 4 27 27 H 1.07998 * 120.03273 * 195.29975 * 9 8 7 28 28 H 0.96998 * 120.00376 * 180.02562 * 14 13 11 29 29 H 1.09006 * 109.40904 * 204.73188 * 19 10 9 30 30 H 1.08989 * 108.97973 * 85.24690 * 19 10 9 31 31 H 1.08993 * 109.37446 * 265.15472 * 20 7 6 32 32 H 1.08998 * 109.37945 * 24.80550 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 6 1.2960 2.3741 -0.0005 5 6 1.9261 3.6047 -0.0086 6 6 3.3109 3.6890 -0.0272 7 6 4.0753 2.5450 -0.0351 8 6 3.4510 1.2890 0.0000 9 6 4.2378 0.1115 0.0424 10 6 5.5772 0.1890 0.3710 11 6 6.3536 -0.9612 0.3690 12 1 6.0565 -1.8122 -0.2259 13 6 7.5270 -1.0187 1.1414 14 7 7.7752 -0.0871 2.0222 15 14 8.7311 -2.4276 0.9076 16 1 9.7283 -2.0596 -0.1295 17 1 9.4284 -2.7008 2.1899 18 1 7.9938 -3.6424 0.4764 19 6 6.2031 1.5107 0.7268 20 6 5.5775 2.6362 -0.0946 21 1 -0.3632 0.5138 0.8899 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 0.2173 2.3212 0.0051 25 1 1.3350 4.5086 0.0000 26 1 3.7908 4.6566 -0.0358 27 1 3.7897 -0.8462 -0.1775 28 1 8.5849 -0.1265 2.5548 29 1 7.2738 1.4701 0.5262 30 1 6.0419 1.7053 1.7870 31 1 5.9040 2.5522 -1.1310 32 1 5.8976 3.5977 0.3068 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260555769.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:14 Heat of formation + Delta-G solvation = -23.286796 kcal Electronic energy + Delta-G solvation = -15536.173911 eV Core-core repulsion = 13040.040598 eV Total energy + Delta-G solvation = -2496.133313 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.27158 -37.26394 -35.36686 -33.08005 -30.80877 -29.49110 -27.85045 -26.68792 -25.15469 -22.28454 -21.32477 -20.45265 -18.16258 -16.76773 -16.05305 -15.58183 -15.12282 -14.96697 -14.36328 -13.76001 -13.51699 -12.75228 -12.60970 -12.51751 -11.76715 -11.57755 -11.52802 -11.33258 -11.22778 -10.86561 -10.76514 -10.51460 -10.31000 -10.10984 -9.53414 -9.29576 -9.14776 -8.62886 -7.43680 -7.11478 -6.65019 -4.35131 2.14021 2.45071 2.87569 2.93418 2.97806 3.70896 3.73861 4.15379 4.69257 5.27548 5.51545 5.60630 5.68271 5.77671 5.86294 6.01946 6.15257 6.28274 6.41461 6.50753 6.66821 6.78327 6.88432 6.96304 7.17742 7.22410 7.31282 7.47660 7.53198 7.64070 7.92114 7.93600 8.11426 8.31636 8.52014 8.82459 8.93052 9.82264 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.033643 B = 0.007657 C = 0.006437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.075480 B = 3655.912043 C = 4349.092198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.310 6.310 3 C 0.049 3.951 4 C -0.187 4.187 5 C -0.180 4.180 6 C -0.121 4.121 7 C -0.132 4.132 8 C 0.051 3.949 9 C -0.380 4.380 10 C 0.115 3.885 11 C -0.421 4.421 12 H 0.086 0.914 13 C 0.067 3.933 14 N -0.773 5.773 15 Si 0.919 3.081 16 H -0.264 1.264 17 H -0.274 1.274 18 H -0.258 1.258 19 C -0.064 4.064 20 C -0.067 4.067 21 H 0.044 0.956 22 H 0.043 0.957 23 H 0.087 0.913 24 H 0.105 0.895 25 H 0.100 0.900 26 H 0.102 0.898 27 H 0.091 0.909 28 H 0.288 0.712 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.555 1.967 -1.445 4.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.224 6.224 3 C 0.005 3.995 4 C -0.206 4.206 5 C -0.198 4.198 6 C -0.139 4.139 7 C -0.133 4.133 8 C 0.050 3.950 9 C -0.400 4.400 10 C 0.112 3.888 11 C -0.448 4.448 12 H 0.104 0.896 13 C -0.155 4.155 14 N -0.396 5.396 15 Si 0.743 3.257 16 H -0.189 1.189 17 H -0.199 1.199 18 H -0.181 1.181 19 C -0.102 4.102 20 C -0.104 4.104 21 H 0.062 0.938 22 H 0.062 0.938 23 H 0.105 0.895 24 H 0.123 0.877 25 H 0.118 0.882 26 H 0.120 0.880 27 H 0.109 0.891 28 H 0.100 0.900 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.263 1.848 -1.239 3.949 hybrid contribution 0.106 -0.395 0.034 0.411 sum -3.157 1.452 -1.204 3.678 Atomic orbital electron populations 1.22820 0.80865 1.02384 1.00216 1.86012 1.18996 1.27696 1.89742 1.19011 0.91929 0.83153 1.05433 1.20773 0.98072 0.92751 1.08996 1.20318 0.94184 0.95692 1.09626 1.20552 0.93446 0.96851 1.03035 1.19612 0.95093 0.91749 1.06846 1.17184 0.88694 0.94028 0.95069 1.19928 0.93377 0.94830 1.31902 1.19284 0.91156 0.92969 0.85399 1.19692 1.03247 1.01067 1.20744 0.89640 1.26346 0.98341 0.97494 0.93344 1.69729 1.24427 1.31103 1.14311 0.86105 0.79704 0.81039 0.78882 1.18889 1.19910 1.18136 1.20326 0.98906 0.91919 0.99006 1.20333 0.91397 0.98719 0.99984 0.93773 0.93842 0.89476 0.87711 0.88192 0.88033 0.89086 0.90033 0.90954 0.91403 0.92489 0.92593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 9.82 101.05 0.99 1.50 16 2 O -0.31 -6.75 9.71 -18.77 -0.18 -6.93 16 3 C 0.05 1.12 6.71 -38.51 -0.26 0.86 16 4 C -0.19 -3.78 9.03 -39.47 -0.36 -4.14 16 5 C -0.18 -3.52 10.03 -39.39 -0.40 -3.91 16 6 C -0.12 -2.48 9.67 -39.63 -0.38 -2.86 16 7 C -0.13 -3.05 5.67 -104.13 -0.59 -3.64 16 8 C 0.05 1.28 5.68 -106.83 -0.61 0.68 16 9 C -0.38 -10.12 9.14 -38.31 -0.35 -10.47 16 10 C 0.12 3.02 5.50 -104.56 -0.57 2.45 16 11 C -0.42 -10.74 8.93 -38.49 -0.34 -11.09 16 12 H 0.09 2.14 7.88 -52.49 -0.41 1.73 16 13 C 0.07 1.55 5.14 -17.19 -0.09 1.46 16 14 N -0.77 -18.26 10.68 55.59 0.59 -17.66 16 15 Si 0.92 17.42 29.58 -169.99 -5.03 12.39 16 16 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 17 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 18 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 19 C -0.06 -1.54 4.28 -28.11 -0.12 -1.66 16 20 C -0.07 -1.45 5.95 -28.06 -0.17 -1.62 16 21 H 0.04 0.63 7.66 -51.93 -0.40 0.23 16 22 H 0.04 0.61 7.67 -51.93 -0.40 0.21 16 23 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 24 H 0.10 1.80 6.31 -52.48 -0.33 1.47 16 25 H 0.10 1.66 8.06 -52.48 -0.42 1.24 16 26 H 0.10 1.81 8.06 -52.48 -0.42 1.38 16 27 H 0.09 2.50 7.66 -52.49 -0.40 2.10 16 28 H 0.29 6.11 8.29 -40.82 -0.34 5.77 16 29 H 0.07 1.72 6.70 -51.93 -0.35 1.37 16 30 H 0.07 1.71 7.93 -51.94 -0.41 1.29 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.06 1.06 8.05 -51.93 -0.42 0.65 16 LS Contribution 267.40 15.07 4.03 4.03 Total: -1.00 -27.60 267.40 -7.78 -35.38 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -3.95 Total: 5.23 kcal Atomic # 6 Polarization: -29.20 SS G_CDS: -3.24 Total: -32.44 kcal Atomic # 7 Polarization: -18.26 SS G_CDS: 0.59 Total: -17.66 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: -0.18 Total: -6.93 kcal Atomic # 14 Polarization: 17.42 SS G_CDS: -5.03 Total: 12.39 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -27.60 -7.78 -35.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260555769.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.093 kcal (2) G-P(sol) polarization free energy of solvation -27.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds