Wall clock time and date at job start Mon Mar 30 2020 02:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35690 * 116.99945 * 2 1 4 4 C 1.38509 * 120.26246 * 359.97401 * 3 2 1 5 5 C 1.38256 * 120.14814 * 180.38525 * 4 3 2 6 6 C 1.38745 * 120.60062 * 0.52850 * 5 4 3 7 7 C 1.37594 * 120.26320 * 359.86346 * 6 5 4 8 8 C 1.40298 * 119.80367 * 358.86107 * 7 6 5 9 9 C 1.41676 * 119.84630 * 182.35504 * 8 7 6 10 10 C 1.38133 * 119.93153 * 15.58115 * 9 8 7 11 11 C 1.38773 * 119.71414 * 182.08159 * 10 9 8 12 12 H 1.08002 * 119.99949 * 23.48818 * 11 10 9 13 13 C 1.40600 * 120.00273 * 203.48929 * 11 10 9 14 14 N 1.30581 * 119.99965 * 11.10398 * 13 11 10 15 15 Si 1.86802 * 120.00228 * 191.11113 * 13 11 10 16 16 H 1.48502 * 109.47193 * 89.99496 * 15 13 11 17 17 H 1.48499 * 109.47103 * 209.99735 * 15 13 11 18 18 H 1.48501 * 109.46887 * 329.99574 * 15 13 11 19 19 C 1.50507 * 120.58241 * 1.87593 * 10 9 8 20 20 C 1.50614 * 120.25885 * 178.26763 * 7 6 5 21 21 H 1.08992 * 109.46603 * 300.00156 * 1 2 3 22 22 H 1.08998 * 109.46666 * 60.00096 * 1 2 3 23 23 H 1.08994 * 109.46877 * 179.97438 * 1 2 3 24 24 H 1.08006 * 119.93040 * 0.37058 * 4 3 2 25 25 H 1.08007 * 119.70045 * 180.54801 * 5 4 3 26 26 H 1.08005 * 119.86792 * 179.84682 * 6 5 4 27 27 H 1.07998 * 120.03273 * 195.29975 * 9 8 7 28 28 H 0.96998 * 120.00376 * 180.02562 * 14 13 11 29 29 H 1.09006 * 109.40904 * 204.73188 * 19 10 9 30 30 H 1.08989 * 108.97973 * 85.24690 * 19 10 9 31 31 H 1.08993 * 109.37446 * 265.15472 * 20 7 6 32 32 H 1.08998 * 109.37945 * 24.80550 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 6 1.2960 2.3741 -0.0005 5 6 1.9261 3.6047 -0.0086 6 6 3.3109 3.6890 -0.0272 7 6 4.0753 2.5450 -0.0351 8 6 3.4510 1.2890 0.0000 9 6 4.2378 0.1115 0.0424 10 6 5.5772 0.1890 0.3710 11 6 6.3536 -0.9612 0.3690 12 1 6.0565 -1.8122 -0.2259 13 6 7.5270 -1.0187 1.1414 14 7 7.7752 -0.0871 2.0222 15 14 8.7311 -2.4276 0.9076 16 1 9.7283 -2.0596 -0.1295 17 1 9.4284 -2.7008 2.1899 18 1 7.9938 -3.6424 0.4764 19 6 6.2031 1.5107 0.7268 20 6 5.5775 2.6362 -0.0946 21 1 -0.3632 0.5138 0.8899 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 0.2173 2.3212 0.0051 25 1 1.3350 4.5086 0.0000 26 1 3.7908 4.6566 -0.0358 27 1 3.7897 -0.8462 -0.1775 28 1 8.5849 -0.1265 2.5548 29 1 7.2738 1.4701 0.5262 30 1 6.0419 1.7053 1.7870 31 1 5.9040 2.5522 -1.1310 32 1 5.8976 3.5977 0.3068 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260555769.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:14 Heat of formation + Delta-G solvation = -37.725898 kcal Electronic energy + Delta-G solvation = -15536.800037 eV Core-core repulsion = 13040.040598 eV Total energy + Delta-G solvation = -2496.759440 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.93207 -38.94186 -37.11166 -34.83702 -32.55199 -31.23888 -29.56671 -28.07266 -26.94435 -24.06915 -23.05379 -22.12145 -19.93480 -18.39819 -17.87531 -17.30439 -16.70623 -16.43981 -16.01925 -15.48125 -15.10859 -14.47800 -14.21639 -14.15916 -13.37426 -13.26876 -13.13477 -13.02644 -12.76282 -12.53248 -12.38280 -12.12917 -11.94341 -11.65328 -11.23478 -11.14600 -10.93726 -10.44947 -9.10902 -8.85545 -8.48650 -6.27612 0.42464 0.77623 1.33477 1.36738 1.50183 1.96945 2.14528 2.70221 2.91844 3.43764 4.08572 4.18430 4.32542 4.42878 4.45827 4.49849 4.63165 4.65358 4.69936 4.78865 4.98908 5.01101 5.12116 5.23803 5.31205 5.49964 5.53954 5.62915 5.82860 5.84838 6.07177 6.23427 6.29836 6.40368 6.84713 6.92263 7.06875 8.09032 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.033643 B = 0.007657 C = 0.006437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.075480 B = 3655.912043 C = 4349.092198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.344 6.344 3 C 0.037 3.963 4 C -0.190 4.190 5 C -0.159 4.159 6 C -0.129 4.129 7 C -0.142 4.142 8 C 0.003 3.997 9 C -0.408 4.408 10 C 0.089 3.911 11 C -0.462 4.462 12 H 0.072 0.928 13 C 0.034 3.966 14 N -0.795 5.795 15 Si 0.992 3.008 16 H -0.253 1.253 17 H -0.259 1.259 18 H -0.264 1.264 19 C -0.049 4.049 20 C -0.065 4.065 21 H 0.058 0.942 22 H 0.060 0.940 23 H 0.110 0.890 24 H 0.140 0.860 25 H 0.143 0.857 26 H 0.136 0.864 27 H 0.060 0.940 28 H 0.301 0.699 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.285 3.740 -1.435 5.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.259 6.259 3 C -0.007 4.007 4 C -0.208 4.208 5 C -0.178 4.178 6 C -0.147 4.147 7 C -0.142 4.142 8 C 0.003 3.997 9 C -0.429 4.429 10 C 0.085 3.915 11 C -0.488 4.488 12 H 0.090 0.910 13 C -0.186 4.186 14 N -0.418 5.418 15 Si 0.811 3.189 16 H -0.177 1.177 17 H -0.183 1.183 18 H -0.188 1.188 19 C -0.087 4.087 20 C -0.102 4.102 21 H 0.077 0.923 22 H 0.079 0.921 23 H 0.129 0.871 24 H 0.157 0.843 25 H 0.161 0.839 26 H 0.154 0.846 27 H 0.078 0.922 28 H 0.112 0.888 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.021 3.643 -1.226 5.563 hybrid contribution 0.063 -0.829 0.023 0.832 sum -3.958 2.814 -1.204 5.004 Atomic orbital electron populations 1.23190 0.77683 1.04627 1.01633 1.85972 1.22410 1.27850 1.89711 1.19286 0.91726 0.84648 1.05035 1.21188 0.99830 0.91928 1.07873 1.20922 0.94244 0.96982 1.05610 1.20947 0.94095 0.97272 1.02356 1.19911 0.95905 0.91987 1.06408 1.17488 0.90191 0.94325 0.97724 1.19839 0.94142 0.94575 1.34333 1.19607 0.91359 0.94362 0.86131 1.19833 1.05430 1.00925 1.22632 0.90982 1.27111 0.99077 1.00150 0.92256 1.69736 1.25286 1.32420 1.14403 0.85048 0.77158 0.77174 0.79519 1.17718 1.18302 1.18770 1.20146 0.98561 0.91851 0.98093 1.20357 0.90953 0.99046 0.99858 0.92326 0.92114 0.87135 0.84252 0.83908 0.84647 0.92210 0.88799 0.91445 0.93323 0.92209 0.89528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.68 9.82 113.37 1.11 1.79 16 2 O -0.34 -15.19 9.71 -90.08 -0.87 -16.07 16 3 C 0.04 1.71 6.71 22.97 0.15 1.87 16 4 C -0.19 -7.09 9.03 22.34 0.20 -6.89 16 5 C -0.16 -5.54 10.03 22.40 0.22 -5.31 16 6 C -0.13 -4.86 9.67 22.24 0.21 -4.65 16 7 C -0.14 -6.46 5.67 -19.54 -0.11 -6.57 16 8 C 0.00 0.18 5.68 -21.30 -0.12 0.06 16 9 C -0.41 -23.35 9.14 23.09 0.21 -23.14 16 10 C 0.09 4.94 5.50 -19.82 -0.11 4.83 16 11 C -0.46 -25.12 8.93 22.97 0.21 -24.91 16 12 H 0.07 3.93 7.88 -2.91 -0.02 3.91 16 13 C 0.03 1.62 5.14 85.46 0.44 2.06 16 14 N -0.80 -38.40 10.68 21.95 0.23 -38.17 16 15 Si 0.99 36.15 29.58 68.60 2.03 38.18 16 16 H -0.25 -8.74 7.11 99.48 0.71 -8.03 16 17 H -0.26 -8.75 7.11 99.48 0.71 -8.04 16 18 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 19 C -0.05 -2.45 4.28 29.70 0.13 -2.32 16 20 C -0.07 -2.80 5.95 29.73 0.18 -2.62 16 21 H 0.06 1.53 7.66 -2.39 -0.02 1.51 16 22 H 0.06 1.55 7.67 -2.39 -0.02 1.53 16 23 H 0.11 2.63 8.14 -2.39 -0.02 2.62 16 24 H 0.14 4.17 6.31 -2.91 -0.02 4.15 16 25 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 26 H 0.14 4.17 8.06 -2.91 -0.02 4.14 16 27 H 0.06 3.63 7.66 -2.91 -0.02 3.60 16 28 H 0.30 12.76 8.29 -92.71 -0.77 11.99 16 29 H 0.07 3.32 6.70 -2.38 -0.02 3.31 16 30 H 0.05 2.54 7.93 -2.39 -0.02 2.52 16 31 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.09 3.13 8.05 -2.39 -0.02 3.11 16 Total: -1.00 -63.58 267.40 5.23 -58.36 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: 1.11 Total: 23.51 kcal Atomic # 6 Polarization: -68.54 SS G_CDS: 2.73 Total: -65.81 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.23 Total: -38.17 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.87 Total: -16.07 kcal Atomic # 14 Polarization: 36.15 SS G_CDS: 2.03 Total: 38.18 kcal Total: -63.58 5.23 -58.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260555769.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.630 kcal (2) G-P(sol) polarization free energy of solvation -63.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds