Wall clock time and date at job start Mon Mar 30 2020 03:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30899 * 125.31081 * 2 1 4 4 C 1.33402 * 109.86923 * 180.02562 * 3 2 1 5 5 C 1.37991 * 107.45857 * 0.02562 * 4 3 2 6 6 C 1.40976 * 133.70649 * 180.02562 * 5 4 3 7 7 C 1.35883 * 119.17198 * 179.97438 * 6 5 4 8 8 C 1.40814 * 119.77211 * 359.82651 * 7 6 5 9 9 C 1.34668 * 120.61851 * 0.39779 * 8 7 6 10 10 C 1.50703 * 119.71794 * 179.83783 * 9 8 7 11 11 H 1.08997 * 109.46919 * 206.25477 * 10 9 8 12 12 C 1.52995 * 109.47041 * 86.25643 * 10 9 8 13 13 C 1.50697 * 109.47432 * 326.25216 * 10 9 8 14 14 H 1.07999 * 119.99629 * 0.02562 * 13 10 9 15 15 C 1.37874 * 120.00116 * 179.97438 * 13 10 9 16 16 N 1.31515 * 120.00282 * 180.02562 * 15 13 10 17 17 Si 1.86800 * 120.00166 * 0.02562 * 15 13 10 18 18 H 1.48506 * 109.46785 * 270.00099 * 17 15 13 19 19 H 1.48495 * 109.47185 * 149.99903 * 17 15 13 20 20 H 1.48499 * 109.47073 * 29.99420 * 17 15 13 21 21 N 1.35034 * 125.31235 * 180.02562 * 2 1 3 22 22 H 1.08994 * 109.46919 * 259.78648 * 1 2 3 23 23 H 1.09001 * 109.47310 * 19.78899 * 1 2 3 24 24 H 1.09004 * 109.46890 * 139.78608 * 1 2 3 25 25 H 1.08002 * 126.26854 * 179.97438 * 4 3 2 26 26 H 1.07998 * 120.41512 * 359.97438 * 6 5 4 27 27 H 1.07999 * 120.11169 * 180.02562 * 7 6 5 28 28 H 1.08002 * 119.69089 * 180.24056 * 8 7 6 29 29 H 1.09000 * 109.47045 * 180.02562 * 12 10 9 30 30 H 1.09005 * 109.46897 * 299.99477 * 12 10 9 31 31 H 1.08994 * 109.47409 * 59.99740 * 12 10 9 32 32 H 0.96993 * 120.00640 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2637 1.0682 0.0000 4 6 3.5495 0.7130 -0.0006 5 6 3.5981 -0.6661 -0.0015 6 6 4.6509 -1.6037 -0.0020 7 6 4.3563 -2.9302 -0.0024 8 6 3.0116 -3.3479 0.0012 9 6 2.0128 -2.4446 -0.0028 10 6 0.5808 -2.9142 -0.0025 11 1 -0.0512 -2.1532 -0.4603 12 6 0.1243 -3.1575 1.4373 13 6 0.4722 -4.1960 -0.7874 14 1 1.3523 -4.6277 -1.2408 15 6 -0.7503 -4.8182 -0.9258 16 7 -0.8450 -5.9372 -1.6104 17 14 -2.2723 -4.0719 -0.1410 18 1 -2.4339 -4.6087 1.2342 19 1 -3.4675 -4.4183 -0.9513 20 1 -2.1253 -2.5954 -0.0818 21 7 2.2876 -1.1019 -0.0005 22 1 -0.3633 -0.1822 1.0113 23 1 -0.3634 0.9670 -0.3479 24 1 -0.3633 -0.7848 -0.6635 25 1 4.3972 1.3822 -0.0011 26 1 5.6786 -1.2718 -0.0019 27 1 5.1510 -3.6616 -0.0024 28 1 2.7790 -4.4026 0.0048 29 1 -0.9113 -3.4976 1.4376 30 1 0.7563 -3.9186 1.8952 31 1 0.2028 -2.2304 2.0050 32 1 -1.7051 -6.3747 -1.7081 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260555771.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:34 Heat of formation + Delta-G solvation = 87.902461 kcal Electronic energy + Delta-G solvation = -16051.916309 eV Core-core repulsion = 13592.897275 eV Total energy + Delta-G solvation = -2459.019034 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.39028 -37.41731 -35.05988 -32.79464 -31.43497 -30.55419 -29.26433 -25.92624 -25.19121 -23.57872 -22.06381 -21.30696 -19.48155 -17.13157 -16.40552 -16.05145 -15.57050 -15.16424 -14.88420 -13.95947 -13.62845 -13.27208 -12.89306 -12.75768 -12.45641 -12.14373 -11.82579 -11.76902 -11.59559 -11.02995 -10.85439 -10.59977 -10.17722 -10.04225 -9.87753 -9.67905 -9.19426 -8.77838 -8.60599 -6.84731 -6.27702 -4.30727 1.36156 1.79088 3.11497 3.12664 3.21015 3.26297 3.45067 3.93887 4.21258 4.81914 4.99152 5.03499 5.17497 5.25022 5.47069 5.54709 5.72016 5.80759 5.88119 5.99317 6.14119 6.27427 6.33079 6.33425 6.41853 6.63496 6.76584 6.79482 6.94088 7.10365 7.26179 7.37867 7.76500 8.25339 8.32757 8.71902 9.30272 10.83853 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.031236 B = 0.010137 C = 0.008230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.195412 B = 2761.626416 C = 3401.354064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.160 3.840 3 N -0.459 5.459 4 C -0.045 4.045 5 C 0.005 3.995 6 C -0.114 4.114 7 C -0.104 4.104 8 C -0.144 4.144 9 C 0.132 3.868 10 C 0.032 3.968 11 H 0.058 0.942 12 C -0.144 4.144 13 C -0.521 4.521 14 H 0.085 0.915 15 C 0.077 3.923 16 N -0.890 5.890 17 Si 0.884 3.116 18 H -0.276 1.276 19 H -0.293 1.293 20 H -0.265 1.265 21 N -0.355 5.355 22 H 0.074 0.926 23 H 0.084 0.916 24 H 0.091 0.909 25 H 0.173 0.827 26 H 0.136 0.864 27 H 0.129 0.871 28 H 0.158 0.842 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.031 0.969 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.738 6.996 4.416 10.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.095 4.095 3 N -0.174 5.174 4 C -0.199 4.199 5 C -0.105 4.105 6 C -0.133 4.133 7 C -0.125 4.125 8 C -0.164 4.164 9 C 0.031 3.969 10 C 0.013 3.987 11 H 0.075 0.925 12 C -0.201 4.201 13 C -0.559 4.559 14 H 0.103 0.897 15 C -0.126 4.126 16 N -0.526 5.526 17 Si 0.713 3.287 18 H -0.203 1.203 19 H -0.221 1.221 20 H -0.190 1.190 21 N -0.025 5.025 22 H 0.092 0.908 23 H 0.103 0.897 24 H 0.109 0.891 25 H 0.190 0.810 26 H 0.154 0.846 27 H 0.147 0.853 28 H 0.176 0.824 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.050 0.950 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.149 7.663 4.347 10.205 hybrid contribution -0.393 -0.619 0.369 0.821 sum 4.756 7.044 4.715 9.720 Atomic orbital electron populations 1.20543 0.85065 1.04280 1.03503 1.22972 0.95508 0.79689 1.11327 1.69872 1.02521 1.27800 1.17243 1.22312 0.94445 0.90433 1.12693 1.19705 0.84291 0.95374 1.11128 1.20300 0.97122 0.91825 1.04091 1.21160 0.96794 0.95486 0.99076 1.20849 0.90504 1.01197 1.03868 1.20885 0.99520 0.78931 0.97608 1.18746 0.86127 0.99127 0.94712 0.92490 1.22170 1.00928 0.99758 0.97267 1.20916 0.96688 1.05195 1.33119 0.89684 1.24939 0.98659 0.94500 0.94551 1.69852 1.25639 1.17171 1.39972 0.86907 0.82635 0.80289 0.78823 1.20288 1.22082 1.18951 1.42885 1.07689 1.06326 1.45647 0.90757 0.89676 0.89058 0.80963 0.84580 0.85260 0.82422 0.93166 0.92232 0.95014 0.92220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.28 9.30 36.01 0.33 -0.94 16 2 C 0.16 3.11 7.93 -155.09 -1.23 1.88 16 3 N -0.46 -8.84 11.19 -10.11 -0.11 -8.96 16 4 C -0.04 -0.77 12.02 -16.96 -0.20 -0.98 16 5 C 0.00 0.08 6.80 -84.09 -0.57 -0.49 16 6 C -0.11 -1.75 10.11 -39.39 -0.40 -2.15 16 7 C -0.10 -1.63 10.07 -39.45 -0.40 -2.03 16 8 C -0.14 -2.73 8.79 -39.87 -0.35 -3.08 16 9 C 0.13 2.72 5.82 -81.52 -0.47 2.25 16 10 C 0.03 0.70 1.60 -92.93 -0.15 0.55 16 11 H 0.06 1.26 3.27 -51.93 -0.17 1.09 16 12 C -0.14 -2.92 8.65 37.16 0.32 -2.59 16 13 C -0.52 -13.36 8.44 -34.44 -0.29 -13.65 16 14 H 0.09 2.33 6.49 -52.49 -0.34 1.99 16 15 C 0.08 2.05 5.45 -17.82 -0.10 1.95 16 16 N -0.89 -25.42 13.96 55.43 0.77 -24.65 16 17 Si 0.88 20.22 24.37 -169.99 -4.14 16.08 16 18 H -0.28 -6.17 6.87 56.52 0.39 -5.78 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.26 -5.64 6.53 56.52 0.37 -5.27 16 21 N -0.36 -7.10 2.94 -54.00 -0.16 -7.25 16 22 H 0.07 1.16 7.94 -51.93 -0.41 0.75 16 23 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 24 H 0.09 1.63 5.27 -51.93 -0.27 1.36 16 25 H 0.17 2.35 8.06 -52.49 -0.42 1.93 16 26 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 27 H 0.13 1.60 8.06 -52.49 -0.42 1.17 16 28 H 0.16 3.06 6.54 -52.49 -0.34 2.71 16 29 H 0.05 1.04 3.27 -51.93 -0.17 0.87 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.03 0.57 7.94 -51.93 -0.41 0.16 16 32 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 257.45 15.07 3.88 3.88 Total: -1.00 -29.32 257.45 -6.69 -36.01 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -3.42 Total: 4.17 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: -3.51 Total: -19.28 kcal Atomic # 7 Polarization: -41.36 SS G_CDS: 0.50 Total: -40.86 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.14 Total: 16.08 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -29.32 -6.69 -36.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260555771.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.912 kcal (2) G-P(sol) polarization free energy of solvation -29.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds