Wall clock time and date at job start Mon Mar 30 2020 03:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30899 * 125.31081 * 2 1 4 4 C 1.33402 * 109.86923 * 180.02562 * 3 2 1 5 5 C 1.37991 * 107.45857 * 0.02562 * 4 3 2 6 6 C 1.40976 * 133.70649 * 180.02562 * 5 4 3 7 7 C 1.35883 * 119.17198 * 179.97438 * 6 5 4 8 8 C 1.40814 * 119.77211 * 359.82651 * 7 6 5 9 9 C 1.34668 * 120.61851 * 0.39779 * 8 7 6 10 10 C 1.50703 * 119.71794 * 179.83783 * 9 8 7 11 11 H 1.08997 * 109.46919 * 206.25477 * 10 9 8 12 12 C 1.52995 * 109.47041 * 86.25643 * 10 9 8 13 13 C 1.50697 * 109.47432 * 326.25216 * 10 9 8 14 14 H 1.07999 * 119.99629 * 0.02562 * 13 10 9 15 15 C 1.37874 * 120.00116 * 179.97438 * 13 10 9 16 16 N 1.31515 * 120.00282 * 180.02562 * 15 13 10 17 17 Si 1.86800 * 120.00166 * 0.02562 * 15 13 10 18 18 H 1.48506 * 109.46785 * 270.00099 * 17 15 13 19 19 H 1.48495 * 109.47185 * 149.99903 * 17 15 13 20 20 H 1.48499 * 109.47073 * 29.99420 * 17 15 13 21 21 N 1.35034 * 125.31235 * 180.02562 * 2 1 3 22 22 H 1.08994 * 109.46919 * 259.78648 * 1 2 3 23 23 H 1.09001 * 109.47310 * 19.78899 * 1 2 3 24 24 H 1.09004 * 109.46890 * 139.78608 * 1 2 3 25 25 H 1.08002 * 126.26854 * 179.97438 * 4 3 2 26 26 H 1.07998 * 120.41512 * 359.97438 * 6 5 4 27 27 H 1.07999 * 120.11169 * 180.02562 * 7 6 5 28 28 H 1.08002 * 119.69089 * 180.24056 * 8 7 6 29 29 H 1.09000 * 109.47045 * 180.02562 * 12 10 9 30 30 H 1.09005 * 109.46897 * 299.99477 * 12 10 9 31 31 H 1.08994 * 109.47409 * 59.99740 * 12 10 9 32 32 H 0.96993 * 120.00640 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2637 1.0682 0.0000 4 6 3.5495 0.7130 -0.0006 5 6 3.5981 -0.6661 -0.0015 6 6 4.6509 -1.6037 -0.0020 7 6 4.3563 -2.9302 -0.0024 8 6 3.0116 -3.3479 0.0012 9 6 2.0128 -2.4446 -0.0028 10 6 0.5808 -2.9142 -0.0025 11 1 -0.0512 -2.1532 -0.4603 12 6 0.1243 -3.1575 1.4373 13 6 0.4722 -4.1960 -0.7874 14 1 1.3523 -4.6277 -1.2408 15 6 -0.7503 -4.8182 -0.9258 16 7 -0.8450 -5.9372 -1.6104 17 14 -2.2723 -4.0719 -0.1410 18 1 -2.4339 -4.6087 1.2342 19 1 -3.4675 -4.4183 -0.9513 20 1 -2.1253 -2.5954 -0.0818 21 7 2.2876 -1.1019 -0.0005 22 1 -0.3633 -0.1822 1.0113 23 1 -0.3634 0.9670 -0.3479 24 1 -0.3633 -0.7848 -0.6635 25 1 4.3972 1.3822 -0.0011 26 1 5.6786 -1.2718 -0.0019 27 1 5.1510 -3.6616 -0.0024 28 1 2.7790 -4.4026 0.0048 29 1 -0.9113 -3.4976 1.4376 30 1 0.7563 -3.9186 1.8952 31 1 0.2028 -2.2304 2.0050 32 1 -1.7051 -6.3747 -1.7081 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260555771.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:34 Heat of formation + Delta-G solvation = 71.135410 kcal Electronic energy + Delta-G solvation = -16052.643383 eV Core-core repulsion = 13592.897275 eV Total energy + Delta-G solvation = -2459.746108 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.77196 -38.87447 -36.60279 -34.48248 -33.10670 -31.94983 -30.67384 -27.37782 -27.01337 -25.03451 -23.41143 -22.88727 -20.96431 -18.89104 -17.92043 -17.54910 -16.99131 -16.78542 -16.30998 -15.44764 -15.16552 -14.94659 -14.23297 -14.20485 -14.08384 -13.66574 -13.35146 -13.24156 -12.98595 -12.67737 -12.36236 -12.30270 -11.77932 -11.48741 -11.41117 -11.31017 -11.01754 -10.76775 -10.04361 -8.33387 -8.20260 -6.38783 0.02630 0.39983 1.30713 1.36055 1.45472 1.72516 2.05645 2.29315 2.59319 3.02463 3.52114 3.59292 3.81086 3.97318 4.11557 4.25354 4.32277 4.50965 4.53907 4.59557 4.66102 4.71142 4.85368 4.99393 5.03261 5.11883 5.34064 5.41905 5.44682 5.50449 5.74428 5.86553 6.15042 6.36730 6.66362 6.94312 7.25355 8.82168 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.031236 B = 0.010137 C = 0.008230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.195412 B = 2761.626416 C = 3401.354064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.137 3.863 3 N -0.476 5.476 4 C -0.039 4.039 5 C -0.020 4.020 6 C -0.093 4.093 7 C -0.115 4.115 8 C -0.142 4.142 9 C 0.097 3.903 10 C 0.035 3.965 11 H 0.059 0.941 12 C -0.139 4.139 13 C -0.517 4.517 14 H 0.052 0.948 15 C 0.022 3.978 16 N -0.940 5.940 17 Si 0.936 3.064 18 H -0.265 1.265 19 H -0.300 1.300 20 H -0.239 1.239 21 N -0.364 5.364 22 H 0.085 0.915 23 H 0.104 0.896 24 H 0.077 0.923 25 H 0.209 0.791 26 H 0.182 0.818 27 H 0.165 0.835 28 H 0.141 0.859 29 H 0.045 0.955 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.882 8.894 5.537 12.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.117 4.117 3 N -0.192 5.192 4 C -0.194 4.194 5 C -0.129 4.129 6 C -0.112 4.112 7 C -0.136 4.136 8 C -0.162 4.162 9 C -0.004 4.004 10 C 0.016 3.984 11 H 0.076 0.924 12 C -0.196 4.196 13 C -0.555 4.555 14 H 0.070 0.930 15 C -0.176 4.176 16 N -0.579 5.579 17 Si 0.763 3.237 18 H -0.191 1.191 19 H -0.227 1.227 20 H -0.162 1.162 21 N -0.034 5.034 22 H 0.103 0.897 23 H 0.122 0.878 24 H 0.095 0.905 25 H 0.226 0.774 26 H 0.199 0.801 27 H 0.183 0.817 28 H 0.159 0.841 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.305 9.578 5.482 12.710 hybrid contribution -0.571 -1.175 -0.024 1.307 sum 5.734 8.403 5.458 11.544 Atomic orbital electron populations 1.20577 0.83983 1.04815 1.03856 1.23447 0.96530 0.79795 1.11912 1.69902 1.03471 1.27855 1.17928 1.22990 0.94805 0.90744 1.10814 1.20335 0.84364 0.96352 1.11850 1.20845 0.98521 0.90997 1.00854 1.21447 0.95928 0.96772 0.99441 1.20946 0.92289 1.00254 1.02746 1.20621 0.98959 0.79823 1.01012 1.18586 0.87838 0.96995 0.95025 0.92374 1.22077 1.00383 1.00789 0.96391 1.21146 0.95477 1.06416 1.32484 0.92952 1.25728 1.01886 0.94823 0.95206 1.69995 1.26383 1.19138 1.42410 0.86032 0.78432 0.81073 0.78155 1.19092 1.22748 1.16249 1.42940 1.08666 1.05921 1.45909 0.89670 0.87780 0.90491 0.77418 0.80120 0.81742 0.84091 0.93606 0.92411 0.92852 0.92319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.39 9.30 71.24 0.66 -1.73 16 2 C 0.14 5.13 7.93 138.02 1.09 6.23 16 3 N -0.48 -17.29 11.19 -185.91 -2.08 -19.37 16 4 C -0.04 -1.24 12.02 84.40 1.01 -0.23 16 5 C -0.02 -0.67 6.80 38.77 0.26 -0.41 16 6 C -0.09 -2.51 10.11 22.39 0.23 -2.29 16 7 C -0.12 -3.33 10.07 22.35 0.23 -3.10 16 8 C -0.14 -5.33 8.79 22.08 0.19 -5.13 16 9 C 0.10 3.96 5.82 40.92 0.24 4.20 16 10 C 0.03 1.51 1.60 -12.29 -0.02 1.49 16 11 H 0.06 2.55 3.27 -2.39 -0.01 2.54 16 12 C -0.14 -5.48 8.65 71.98 0.62 -4.86 16 13 C -0.52 -27.24 8.44 25.60 0.22 -27.03 16 14 H 0.05 3.02 6.49 -2.91 -0.02 3.00 16 15 C 0.02 1.20 5.45 84.65 0.46 1.66 16 16 N -0.94 -55.62 13.96 21.45 0.30 -55.32 16 17 Si 0.94 41.50 24.37 68.60 1.67 43.18 16 18 H -0.26 -11.20 6.87 99.48 0.68 -10.51 16 19 H -0.30 -13.50 7.11 99.48 0.71 -12.79 16 20 H -0.24 -9.50 6.53 99.48 0.65 -8.85 16 21 N -0.36 -14.03 2.94 -324.75 -0.96 -14.99 16 22 H 0.08 2.49 7.94 -2.39 -0.02 2.47 16 23 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 24 H 0.08 2.67 5.27 -2.38 -0.01 2.66 16 25 H 0.21 4.76 8.06 -2.91 -0.02 4.74 16 26 H 0.18 3.20 8.06 -2.91 -0.02 3.17 16 27 H 0.17 3.50 8.06 -2.91 -0.02 3.47 16 28 H 0.14 5.66 6.54 -2.91 -0.02 5.64 16 29 H 0.05 1.82 3.27 -2.39 -0.01 1.81 16 30 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 31 H 0.05 1.84 7.94 -2.39 -0.02 1.82 16 32 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -64.50 257.45 5.19 -59.31 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 1.06 Total: 18.37 kcal Atomic # 6 Polarization: -36.38 SS G_CDS: 5.20 Total: -31.18 kcal Atomic # 7 Polarization: -86.94 SS G_CDS: -2.74 Total: -89.68 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 1.67 Total: 43.18 kcal Total: -64.50 5.19 -59.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260555771.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.447 kcal (2) G-P(sol) polarization free energy of solvation -64.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds