Wall clock time and date at job start Mon Mar 30 2020 03:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30902 * 125.31189 * 2 1 4 4 C 1.33404 * 109.86788 * 180.02562 * 3 2 1 5 5 C 1.37998 * 107.45971 * 359.97438 * 4 3 2 6 6 C 1.40968 * 133.70769 * 180.02562 * 5 4 3 7 7 C 1.35871 * 119.17512 * 180.02562 * 6 5 4 8 8 C 1.40815 * 119.77477 * 359.97438 * 7 6 5 9 9 C 1.34672 * 120.61683 * 0.02562 * 8 7 6 10 10 C 1.50700 * 119.71985 * 179.97438 * 9 8 7 11 11 H 1.09008 * 109.46901 * 205.49919 * 10 9 8 12 12 C 1.52998 * 109.47385 * 325.49839 * 10 9 8 13 13 C 1.50697 * 109.47157 * 85.50078 * 10 9 8 14 14 H 1.08000 * 119.99932 * 0.02562 * 13 10 9 15 15 C 1.37874 * 119.99967 * 179.97438 * 13 10 9 16 16 N 1.31518 * 119.99727 * 180.02562 * 15 13 10 17 17 Si 1.86795 * 120.00167 * 359.72820 * 15 13 10 18 18 H 1.48500 * 109.47327 * 89.99654 * 17 15 13 19 19 H 1.48501 * 109.47469 * 209.99684 * 17 15 13 20 20 H 1.48506 * 109.47298 * 329.99828 * 17 15 13 21 21 N 1.35030 * 125.31138 * 180.29662 * 2 1 3 22 22 H 1.09000 * 109.47488 * 96.24423 * 1 2 3 23 23 H 1.09003 * 109.47444 * 216.24614 * 1 2 3 24 24 H 1.09006 * 109.47373 * 336.24764 * 1 2 3 25 25 H 1.07998 * 126.26818 * 179.97438 * 4 3 2 26 26 H 1.07998 * 120.40878 * 0.02562 * 6 5 4 27 27 H 1.08003 * 120.11778 * 179.97438 * 7 6 5 28 28 H 1.07999 * 119.69054 * 180.02562 * 8 7 6 29 29 H 1.08998 * 109.47386 * 179.97438 * 12 10 9 30 30 H 1.09005 * 109.47219 * 300.00496 * 12 10 9 31 31 H 1.09008 * 109.47036 * 60.00162 * 12 10 9 32 32 H 0.97001 * 119.99424 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2637 1.0682 0.0000 4 6 3.5495 0.7129 -0.0006 5 6 3.5981 -0.6662 -0.0003 6 6 4.6507 -1.6038 -0.0002 7 6 4.3562 -2.9302 -0.0006 8 6 3.0115 -3.3480 -0.0004 9 6 2.0127 -2.4447 -0.0005 10 6 0.5807 -2.9142 -0.0010 11 1 -0.0535 -2.1459 -0.4434 12 6 0.4666 -4.2026 -0.8183 13 6 0.1377 -3.1769 1.4153 14 1 0.8243 -3.0192 2.2339 15 6 -1.1444 -3.6176 1.6660 16 7 -1.5311 -3.8463 2.9021 17 14 -2.3348 -3.8818 0.2510 18 1 -2.2172 -5.2780 -0.2408 19 1 -3.7226 -3.6372 0.7193 20 1 -2.0110 -2.9401 -0.8507 21 7 2.2875 -1.1019 -0.0057 22 1 -0.3634 -0.1118 -1.0215 23 1 -0.3634 -0.8288 0.6076 24 1 -0.3634 0.9406 0.4139 25 1 4.3972 1.3821 -0.0011 26 1 5.6784 -1.2719 0.0001 27 1 5.1508 -3.6617 -0.0009 28 1 2.7790 -4.4026 -0.0003 29 1 -0.5690 -4.5424 -0.8182 30 1 0.7871 -4.0126 -1.8427 31 1 1.1008 -4.9709 -0.3758 32 1 -2.4330 -4.1567 3.0785 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260555773.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:36 Heat of formation + Delta-G solvation = 84.683375 kcal Electronic energy + Delta-G solvation = -16092.967837 eV Core-core repulsion = 13633.809212 eV Total energy + Delta-G solvation = -2459.158624 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.31517 -37.43499 -35.02314 -32.70124 -31.58439 -30.49708 -29.00155 -25.80818 -25.33657 -23.56660 -22.01867 -21.13022 -19.45247 -16.99461 -16.65322 -16.00408 -15.45170 -15.18034 -14.78736 -14.07061 -13.65489 -13.01421 -12.76022 -12.63269 -12.41745 -12.08451 -11.97520 -11.65868 -11.48030 -11.11778 -10.77079 -10.47184 -10.16311 -10.09805 -9.77802 -9.66437 -9.34723 -8.79378 -8.57101 -6.78976 -6.29027 -4.33190 1.39790 1.81613 3.10700 3.17799 3.20653 3.25167 3.55564 3.95960 4.18990 4.95398 4.99286 5.01218 5.22288 5.27819 5.50534 5.50889 5.87237 5.98420 6.01845 6.08035 6.17891 6.21931 6.38796 6.42661 6.51151 6.63613 6.65320 6.79341 6.93344 7.15706 7.24950 7.38148 7.79801 8.23433 8.42282 8.72890 9.27850 10.82853 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.030076 B = 0.010274 C = 0.008800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.759783 B = 2724.651397 C = 3181.234487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.178 3.822 3 N -0.463 5.463 4 C -0.042 4.042 5 C 0.000 4.000 6 C -0.112 4.112 7 C -0.105 4.105 8 C -0.168 4.168 9 C 0.151 3.849 10 C 0.031 3.969 11 H 0.055 0.945 12 C -0.147 4.147 13 C -0.517 4.517 14 H 0.077 0.923 15 C 0.079 3.921 16 N -0.887 5.887 17 Si 0.882 3.118 18 H -0.275 1.275 19 H -0.292 1.292 20 H -0.264 1.264 21 N -0.355 5.355 22 H 0.069 0.931 23 H 0.108 0.892 24 H 0.082 0.918 25 H 0.173 0.827 26 H 0.136 0.864 27 H 0.128 0.872 28 H 0.146 0.854 29 H 0.049 0.951 30 H 0.035 0.965 31 H 0.061 0.939 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.163 1.696 -7.412 10.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.077 4.077 3 N -0.177 5.177 4 C -0.196 4.196 5 C -0.109 4.109 6 C -0.132 4.132 7 C -0.126 4.126 8 C -0.188 4.188 9 C 0.049 3.951 10 C 0.012 3.988 11 H 0.072 0.928 12 C -0.205 4.205 13 C -0.555 4.555 14 H 0.095 0.905 15 C -0.124 4.124 16 N -0.523 5.523 17 Si 0.712 3.288 18 H -0.202 1.202 19 H -0.220 1.220 20 H -0.189 1.189 21 N -0.025 5.025 22 H 0.088 0.912 23 H 0.127 0.873 24 H 0.101 0.899 25 H 0.190 0.810 26 H 0.154 0.846 27 H 0.146 0.854 28 H 0.164 0.836 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.549 2.470 -7.284 10.102 hybrid contribution -0.202 -1.111 -0.524 1.245 sum 6.347 1.360 -7.808 10.154 Atomic orbital electron populations 1.20555 0.84755 1.05465 1.03208 1.23083 0.95700 0.79405 1.09539 1.69912 1.02455 1.27835 1.17535 1.22323 0.94538 0.90401 1.12354 1.19683 0.84291 0.95414 1.11537 1.20256 0.97113 0.91787 1.04048 1.21021 0.96448 0.95512 0.99607 1.20589 0.91071 1.00200 1.06975 1.20817 0.99147 0.79582 0.95582 1.18732 0.86439 0.94875 0.98761 0.92769 1.22246 1.01147 0.99249 0.97817 1.20689 0.98748 1.46706 0.89332 0.90538 1.24940 0.97660 0.94314 0.95536 1.69867 1.19105 1.44425 1.18889 0.86924 0.80154 0.79078 0.82656 1.20212 1.21957 1.18900 1.42781 1.07644 1.06158 1.45912 0.91238 0.87336 0.89907 0.81009 0.84631 0.85422 0.83612 0.93240 0.94573 0.91979 0.92149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.53 8.70 36.01 0.31 -1.22 16 2 C 0.18 3.71 7.93 -155.09 -1.23 2.48 16 3 N -0.46 -9.42 11.19 -10.11 -0.11 -9.53 16 4 C -0.04 -0.77 12.02 -16.96 -0.20 -0.97 16 5 C 0.00 0.00 6.80 -84.09 -0.57 -0.58 16 6 C -0.11 -1.75 10.11 -39.40 -0.40 -2.15 16 7 C -0.10 -1.61 10.07 -39.46 -0.40 -2.01 16 8 C -0.17 -3.04 9.07 -39.87 -0.36 -3.40 16 9 C 0.15 3.12 5.75 -81.52 -0.47 2.65 16 10 C 0.03 0.68 1.42 -92.93 -0.13 0.55 16 11 H 0.05 1.19 4.00 -51.92 -0.21 0.98 16 12 C -0.15 -2.88 8.08 37.16 0.30 -2.58 16 13 C -0.52 -13.41 8.20 -34.44 -0.28 -13.70 16 14 H 0.08 2.25 7.98 -52.49 -0.42 1.83 16 15 C 0.08 2.11 5.45 -17.82 -0.10 2.01 16 16 N -0.89 -25.45 13.96 55.43 0.77 -24.68 16 17 Si 0.88 20.06 24.38 -169.99 -4.15 15.91 16 18 H -0.28 -6.10 6.86 56.52 0.39 -5.71 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.26 -5.64 6.53 56.52 0.37 -5.27 16 21 N -0.35 -7.39 2.94 -54.00 -0.16 -7.54 16 22 H 0.07 1.17 8.02 -51.93 -0.42 0.75 16 23 H 0.11 2.28 5.31 -51.93 -0.28 2.00 16 24 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 25 H 0.17 2.46 8.06 -52.49 -0.42 2.04 16 26 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 27 H 0.13 1.50 8.06 -52.48 -0.42 1.08 16 28 H 0.15 2.43 6.17 -52.49 -0.32 2.11 16 29 H 0.05 1.01 3.29 -51.93 -0.17 0.84 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 1.14 6.47 -51.92 -0.34 0.81 16 32 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 256.61 15.07 3.87 3.87 Total: -1.00 -29.77 256.61 -6.75 -36.53 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -3.44 Total: 4.36 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: -3.53 Total: -18.92 kcal Atomic # 7 Polarization: -42.26 SS G_CDS: 0.50 Total: -41.75 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.15 Total: 15.91 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -29.77 -6.75 -36.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260555773.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.210 kcal (2) G-P(sol) polarization free energy of solvation -29.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds