Wall clock time and date at job start Mon Mar 30 2020 03:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30902 * 125.31189 * 2 1 4 4 C 1.33404 * 109.86788 * 180.02562 * 3 2 1 5 5 C 1.37998 * 107.45971 * 359.97438 * 4 3 2 6 6 C 1.40968 * 133.70769 * 180.02562 * 5 4 3 7 7 C 1.35871 * 119.17512 * 180.02562 * 6 5 4 8 8 C 1.40815 * 119.77477 * 359.97438 * 7 6 5 9 9 C 1.34672 * 120.61683 * 0.02562 * 8 7 6 10 10 C 1.50700 * 119.71985 * 179.97438 * 9 8 7 11 11 H 1.09008 * 109.46901 * 205.49919 * 10 9 8 12 12 C 1.52998 * 109.47385 * 325.49839 * 10 9 8 13 13 C 1.50697 * 109.47157 * 85.50078 * 10 9 8 14 14 H 1.08000 * 119.99932 * 0.02562 * 13 10 9 15 15 C 1.37874 * 119.99967 * 179.97438 * 13 10 9 16 16 N 1.31518 * 119.99727 * 180.02562 * 15 13 10 17 17 Si 1.86795 * 120.00167 * 359.72820 * 15 13 10 18 18 H 1.48500 * 109.47327 * 89.99654 * 17 15 13 19 19 H 1.48501 * 109.47469 * 209.99684 * 17 15 13 20 20 H 1.48506 * 109.47298 * 329.99828 * 17 15 13 21 21 N 1.35030 * 125.31138 * 180.29662 * 2 1 3 22 22 H 1.09000 * 109.47488 * 96.24423 * 1 2 3 23 23 H 1.09003 * 109.47444 * 216.24614 * 1 2 3 24 24 H 1.09006 * 109.47373 * 336.24764 * 1 2 3 25 25 H 1.07998 * 126.26818 * 179.97438 * 4 3 2 26 26 H 1.07998 * 120.40878 * 0.02562 * 6 5 4 27 27 H 1.08003 * 120.11778 * 179.97438 * 7 6 5 28 28 H 1.07999 * 119.69054 * 180.02562 * 8 7 6 29 29 H 1.08998 * 109.47386 * 179.97438 * 12 10 9 30 30 H 1.09005 * 109.47219 * 300.00496 * 12 10 9 31 31 H 1.09008 * 109.47036 * 60.00162 * 12 10 9 32 32 H 0.97001 * 119.99424 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2637 1.0682 0.0000 4 6 3.5495 0.7129 -0.0006 5 6 3.5981 -0.6662 -0.0003 6 6 4.6507 -1.6038 -0.0002 7 6 4.3562 -2.9302 -0.0006 8 6 3.0115 -3.3480 -0.0004 9 6 2.0127 -2.4447 -0.0005 10 6 0.5807 -2.9142 -0.0010 11 1 -0.0535 -2.1459 -0.4434 12 6 0.4666 -4.2026 -0.8183 13 6 0.1377 -3.1769 1.4153 14 1 0.8243 -3.0192 2.2339 15 6 -1.1444 -3.6176 1.6660 16 7 -1.5311 -3.8463 2.9021 17 14 -2.3348 -3.8818 0.2510 18 1 -2.2172 -5.2780 -0.2408 19 1 -3.7226 -3.6372 0.7193 20 1 -2.0110 -2.9401 -0.8507 21 7 2.2875 -1.1019 -0.0057 22 1 -0.3634 -0.1118 -1.0215 23 1 -0.3634 -0.8288 0.6076 24 1 -0.3634 0.9406 0.4139 25 1 4.3972 1.3821 -0.0011 26 1 5.6784 -1.2719 0.0001 27 1 5.1508 -3.6617 -0.0009 28 1 2.7790 -4.4026 -0.0003 29 1 -0.5690 -4.5424 -0.8182 30 1 0.7871 -4.0126 -1.8427 31 1 1.1008 -4.9709 -0.3758 32 1 -2.4330 -4.1567 3.0785 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260555773.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:35 Heat of formation + Delta-G solvation = 67.036401 kcal Electronic energy + Delta-G solvation = -16093.733067 eV Core-core repulsion = 13633.809212 eV Total energy + Delta-G solvation = -2459.923855 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.74221 -38.89559 -36.58406 -34.39348 -33.28647 -31.94596 -30.46750 -27.32743 -27.08465 -25.08128 -23.41610 -22.69250 -20.97183 -18.89532 -18.13092 -17.48039 -16.98215 -16.64965 -16.31725 -15.55644 -15.20577 -14.76447 -14.30788 -14.17088 -13.90974 -13.63796 -13.41548 -13.11790 -13.05960 -12.71417 -12.33272 -12.07814 -11.78137 -11.59824 -11.37830 -11.26570 -11.14458 -10.80014 -10.02872 -8.35452 -8.18344 -6.42524 0.05446 0.40649 1.30247 1.36429 1.46147 1.76152 2.08469 2.27526 2.61579 2.99764 3.56491 3.59705 3.83378 3.98653 4.12783 4.29928 4.43134 4.54348 4.58921 4.61462 4.67099 4.72600 4.95288 4.98627 5.06820 5.14879 5.25228 5.40571 5.48168 5.49957 5.74542 5.89036 6.15970 6.33851 6.61531 6.96671 7.22106 8.81350 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.030076 B = 0.010274 C = 0.008800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.759783 B = 2724.651397 C = 3181.234487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.142 3.858 3 N -0.480 5.480 4 C -0.045 4.045 5 C -0.020 4.020 6 C -0.100 4.100 7 C -0.110 4.110 8 C -0.155 4.155 9 C 0.103 3.897 10 C 0.034 3.966 11 H 0.052 0.948 12 C -0.145 4.145 13 C -0.508 4.508 14 H 0.024 0.976 15 C 0.025 3.975 16 N -0.941 5.941 17 Si 0.943 3.057 18 H -0.260 1.260 19 H -0.298 1.298 20 H -0.242 1.242 21 N -0.363 5.363 22 H 0.085 0.915 23 H 0.080 0.920 24 H 0.093 0.907 25 H 0.209 0.791 26 H 0.180 0.820 27 H 0.172 0.828 28 H 0.157 0.843 29 H 0.042 0.958 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.056 1.344 -9.539 13.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.113 4.113 3 N -0.196 5.196 4 C -0.200 4.200 5 C -0.129 4.129 6 C -0.119 4.119 7 C -0.130 4.130 8 C -0.175 4.175 9 C 0.001 3.999 10 C 0.015 3.985 11 H 0.070 0.930 12 C -0.202 4.202 13 C -0.546 4.546 14 H 0.042 0.958 15 C -0.173 4.173 16 N -0.580 5.580 17 Si 0.769 3.231 18 H -0.186 1.186 19 H -0.226 1.226 20 H -0.166 1.166 21 N -0.033 5.033 22 H 0.104 0.896 23 H 0.098 0.902 24 H 0.112 0.888 25 H 0.225 0.775 26 H 0.197 0.803 27 H 0.189 0.811 28 H 0.174 0.826 29 H 0.060 0.940 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.453 2.114 -9.432 12.841 hybrid contribution -0.591 -0.957 0.213 1.145 sum 7.862 1.157 -9.219 12.171 Atomic orbital electron populations 1.20475 0.84413 1.04804 1.03666 1.23355 0.96420 0.79957 1.11531 1.69889 1.03594 1.28006 1.18069 1.23002 0.94719 0.90998 1.11235 1.20376 0.84442 0.96389 1.11720 1.20847 0.98280 0.91316 1.01437 1.21462 0.96109 0.96555 0.98884 1.21000 0.92152 1.00350 1.04023 1.20765 0.99051 0.80228 0.99862 1.18555 0.87791 0.96030 0.96103 0.92981 1.22178 1.00965 0.97963 0.99102 1.20764 0.97786 1.45458 0.90554 0.95786 1.25757 0.99521 0.94120 0.97948 1.70025 1.19726 1.46726 1.21496 0.85944 0.77094 0.80170 0.79932 1.18595 1.22622 1.16556 1.42900 1.08539 1.06133 1.45778 0.89631 0.90168 0.88793 0.77472 0.80257 0.81052 0.82575 0.93957 0.91678 0.91236 0.92198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.89 8.70 71.24 0.62 -2.27 16 2 C 0.14 5.93 7.93 138.02 1.09 7.02 16 3 N -0.48 -19.29 11.19 -185.91 -2.08 -21.37 16 4 C -0.05 -1.56 12.02 84.40 1.01 -0.55 16 5 C -0.02 -0.72 6.80 38.77 0.26 -0.46 16 6 C -0.10 -2.70 10.11 22.39 0.23 -2.48 16 7 C -0.11 -2.92 10.07 22.35 0.23 -2.70 16 8 C -0.16 -5.26 9.07 22.08 0.20 -5.06 16 9 C 0.10 4.18 5.75 40.92 0.24 4.41 16 10 C 0.03 1.50 1.42 -12.29 -0.02 1.48 16 11 H 0.05 2.28 4.00 -2.38 -0.01 2.27 16 12 C -0.14 -5.38 8.08 71.98 0.58 -4.80 16 13 C -0.51 -27.27 8.20 25.60 0.21 -27.06 16 14 H 0.02 1.49 7.98 -2.91 -0.02 1.47 16 15 C 0.03 1.38 5.45 84.65 0.46 1.84 16 16 N -0.94 -56.31 13.96 21.45 0.30 -56.01 16 17 Si 0.94 41.44 24.38 68.60 1.67 43.11 16 18 H -0.26 -10.75 6.86 99.48 0.68 -10.07 16 19 H -0.30 -13.32 7.11 99.48 0.71 -12.61 16 20 H -0.24 -9.66 6.53 99.48 0.65 -9.01 16 21 N -0.36 -14.93 2.94 -324.75 -0.96 -15.89 16 22 H 0.09 2.87 8.02 -2.39 -0.02 2.85 16 23 H 0.08 3.50 5.31 -2.39 -0.01 3.49 16 24 H 0.09 3.23 8.14 -2.38 -0.02 3.21 16 25 H 0.21 5.26 8.06 -2.91 -0.02 5.24 16 26 H 0.18 3.22 8.06 -2.91 -0.02 3.20 16 27 H 0.17 3.06 8.06 -2.91 -0.02 3.04 16 28 H 0.16 4.83 6.17 -2.91 -0.02 4.81 16 29 H 0.04 1.62 3.29 -2.39 -0.01 1.61 16 30 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 31 H 0.07 2.43 6.47 -2.38 -0.02 2.41 16 32 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -67.65 256.61 5.10 -62.54 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: 1.05 Total: 18.23 kcal Atomic # 6 Polarization: -35.73 SS G_CDS: 5.12 Total: -30.62 kcal Atomic # 7 Polarization: -90.53 SS G_CDS: -2.74 Total: -93.27 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 1.67 Total: 43.11 kcal Total: -67.65 5.10 -62.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260555773.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.578 kcal (2) G-P(sol) polarization free energy of solvation -67.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds