Wall clock time and date at job start Mon Mar 30 2020 03:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.40814 * 120.11238 * 2 1 4 4 C 1.34676 * 120.61450 * 179.97438 * 3 2 1 5 5 N 1.37063 * 120.55727 * 359.95918 * 4 3 2 6 6 C 1.35029 * 133.11197 * 180.02562 * 5 4 3 7 7 N 1.30909 * 109.37059 * 179.75529 * 6 5 4 8 8 C 1.33406 * 109.86814 * 0.24809 * 7 6 5 9 9 C 1.50698 * 126.26443 * 179.97438 * 8 7 6 10 10 H 1.08997 * 109.46994 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.47155 * 60.02549 * 9 8 7 12 12 C 1.50697 * 109.47155 * 300.02067 * 9 8 7 13 13 H 1.07995 * 120.00253 * 0.02562 * 12 9 8 14 14 C 1.37880 * 119.99676 * 180.02562 * 12 9 8 15 15 N 1.31517 * 120.00212 * 0.02562 * 14 12 9 16 16 Si 1.86804 * 119.99874 * 180.02562 * 14 12 9 17 17 H 1.48502 * 109.47001 * 60.00216 * 16 14 12 18 18 H 1.48495 * 109.47007 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46912 * 300.00042 * 16 14 12 20 20 C 1.37988 * 107.45956 * 359.97438 * 8 7 6 21 21 C 1.35883 * 120.11313 * 180.33988 * 2 1 3 22 22 H 1.08995 * 109.47574 * 89.99460 * 1 2 3 23 23 H 1.09003 * 109.47186 * 209.99836 * 1 2 3 24 24 H 1.09003 * 109.47490 * 329.99701 * 1 2 3 25 25 H 1.08001 * 119.69168 * 359.97438 * 3 2 1 26 26 H 1.07998 * 119.71730 * 179.97438 * 4 3 2 27 27 H 1.08002 * 125.31721 * 0.02793 * 6 5 4 28 28 H 1.09005 * 109.47011 * 179.97438 * 11 9 8 29 29 H 1.09003 * 109.47118 * 299.99321 * 11 9 8 30 30 H 1.08999 * 109.47272 * 59.99903 * 11 9 8 31 31 H 0.97001 * 119.99981 * 180.02562 * 15 14 12 32 32 H 1.08002 * 120.40889 * 359.55645 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2134 1.2181 0.0000 4 6 3.5601 1.2299 0.0005 5 7 4.2673 0.0558 0.0019 6 6 5.5878 -0.2262 0.0031 7 7 5.7545 -1.5246 0.0094 8 6 4.5679 -2.1341 0.0071 9 6 4.3301 -3.6222 0.0120 10 1 3.2580 -3.8188 0.0081 11 6 4.9563 -4.2346 1.2665 12 6 4.9577 -4.2352 -1.2133 13 1 5.4771 -3.6099 -1.9242 14 6 4.8686 -5.5945 -1.4266 15 7 4.2356 -6.3560 -0.5611 16 14 5.6471 -6.3546 -2.9451 17 1 7.1079 -6.0873 -2.9389 18 1 5.4116 -7.8207 -2.9409 19 1 5.0402 -5.7597 -4.1629 20 6 3.5982 -1.1524 -0.0006 21 6 2.1887 -1.1754 -0.0070 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5139 25 1 1.6702 2.1516 -0.0004 26 1 4.0873 2.1725 0.0001 27 1 6.3824 0.5053 0.0037 28 1 4.7839 -5.3109 1.2702 29 1 6.0285 -4.0381 1.2704 30 1 4.5024 -3.7912 2.1527 31 1 4.1733 -7.3123 -0.7110 32 1 1.6573 -2.1156 -0.0053 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260555814.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:30 Heat of formation + Delta-G solvation = 74.760270 kcal Electronic energy + Delta-G solvation = -15509.266399 eV Core-core repulsion = 13049.677476 eV Total energy + Delta-G solvation = -2459.588922 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.13186 -37.36062 -34.62512 -33.01108 -30.83778 -30.29120 -28.59447 -25.71667 -24.97301 -23.12279 -21.99341 -21.31330 -19.08731 -17.17118 -16.13360 -15.93475 -15.19250 -15.08910 -14.48445 -14.09236 -13.79855 -13.32319 -12.76354 -12.35630 -12.27958 -11.76276 -11.51490 -11.23809 -11.14337 -10.81452 -10.67353 -10.39274 -10.02714 -9.90091 -9.66238 -9.21493 -8.80806 -8.71053 -8.26665 -6.69435 -5.89259 -3.93691 1.23765 1.74868 3.16870 3.40371 3.43355 3.47910 3.69831 4.01481 4.54772 4.69781 4.97667 5.08494 5.22504 5.31442 5.41819 5.43542 5.69381 5.78448 5.91695 6.05768 6.21388 6.29813 6.41952 6.72745 6.98405 7.07204 7.13208 7.31833 7.49402 7.76426 7.79247 8.01673 8.21024 8.49345 8.77996 9.07046 9.68876 11.16299 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.030816 B = 0.007524 C = 0.006902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.392371 B = 3720.722896 C = 4055.804406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.136 4.136 3 C -0.129 4.129 4 C 0.037 3.963 5 N -0.377 5.377 6 C 0.125 3.875 7 N -0.446 5.446 8 C 0.088 3.912 9 C 0.117 3.883 10 H 0.038 0.962 11 C -0.128 4.128 12 C -0.494 4.494 13 H 0.056 0.944 14 C 0.060 3.940 15 N -0.895 5.895 16 Si 0.894 3.106 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.279 1.279 20 C -0.036 4.036 21 C -0.037 4.037 22 H 0.065 0.935 23 H 0.066 0.934 24 H 0.061 0.939 25 H 0.136 0.864 26 H 0.154 0.846 27 H 0.201 0.799 28 H 0.085 0.915 29 H 0.034 0.966 30 H 0.004 0.996 31 H 0.260 0.740 32 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.450 14.070 1.963 15.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.139 4.139 3 C -0.151 4.151 4 C -0.083 4.083 5 N -0.050 5.050 6 C -0.149 4.149 7 N -0.160 5.160 8 C -0.048 4.048 9 C 0.097 3.903 10 H 0.056 0.944 11 C -0.186 4.186 12 C -0.532 4.532 13 H 0.074 0.926 14 C -0.141 4.141 15 N -0.534 5.534 16 Si 0.722 3.278 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.205 1.205 20 C -0.141 4.141 21 C -0.057 4.057 22 H 0.084 0.916 23 H 0.085 0.915 24 H 0.080 0.920 25 H 0.154 0.846 26 H 0.172 0.828 27 H 0.217 0.783 28 H 0.104 0.896 29 H 0.053 0.947 30 H 0.023 0.977 31 H 0.070 0.930 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.610 13.601 2.001 14.500 hybrid contribution -0.174 0.256 -0.890 0.942 sum -4.784 13.857 1.111 14.702 Atomic orbital electron populations 1.20621 0.90778 1.02409 1.01981 1.19545 0.96272 0.92371 1.05666 1.20530 0.92360 0.98576 1.03632 1.21380 0.92824 0.88644 1.05441 1.42846 1.08096 1.06171 1.47927 1.24883 0.82691 0.94836 1.12538 1.70012 1.27499 1.02713 1.15761 1.22149 0.85373 0.97373 0.99952 1.17285 0.96910 0.80791 0.95291 0.94377 1.21708 0.98754 1.03489 0.94626 1.21002 1.34314 0.92200 1.05708 0.92606 1.24921 0.95466 0.97089 0.96590 1.69873 1.42977 1.05164 1.35430 0.86628 0.79980 0.77821 0.83402 1.20250 1.21342 1.20455 1.19542 0.93444 0.85655 1.15448 1.20444 0.90240 0.98770 0.96293 0.91587 0.91533 0.92026 0.84580 0.82826 0.78251 0.89621 0.94698 0.97714 0.93010 0.84021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.09 10.02 36.00 0.36 -0.73 16 2 C -0.14 -1.94 5.89 -104.50 -0.62 -2.56 16 3 C -0.13 -1.62 9.66 -39.87 -0.39 -2.00 16 4 C 0.04 0.49 10.97 -16.47 -0.18 0.31 16 5 N -0.38 -6.68 2.94 -62.43 -0.18 -6.86 16 6 C 0.12 2.28 12.75 -90.05 -1.15 1.13 16 7 N -0.45 -10.30 11.20 -10.19 -0.11 -10.41 16 8 C 0.09 2.13 5.65 -82.00 -0.46 1.66 16 9 C 0.12 3.10 2.72 -92.93 -0.25 2.85 16 10 H 0.04 1.04 7.76 -51.93 -0.40 0.64 16 11 C -0.13 -3.31 8.95 37.16 0.33 -2.98 16 12 C -0.49 -14.28 8.55 -34.44 -0.29 -14.58 16 13 H 0.06 1.66 7.74 -52.49 -0.41 1.26 16 14 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 15 N -0.89 -25.93 11.32 55.43 0.63 -25.30 16 16 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 C -0.04 -0.75 6.74 -84.09 -0.57 -1.31 16 21 C -0.04 -0.66 9.60 -39.39 -0.38 -1.04 16 22 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 24 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 25 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 26 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 27 H 0.20 2.65 8.06 -52.49 -0.42 2.23 16 28 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 29 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 31 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.14 2.45 7.83 -52.49 -0.41 2.04 16 LS Contribution 275.61 15.07 4.15 4.15 Total: -1.00 -32.54 275.61 -8.27 -40.81 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: -4.05 Total: -1.83 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: -3.69 Total: -17.64 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: 0.33 Total: -42.58 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -32.54 -8.27 -40.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260555814.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.567 kcal (2) G-P(sol) polarization free energy of solvation -32.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds