Wall clock time and date at job start Mon Mar 30 2020 03:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.40814 * 120.11238 * 2 1 4 4 C 1.34676 * 120.61450 * 179.97438 * 3 2 1 5 5 N 1.37063 * 120.55727 * 359.95918 * 4 3 2 6 6 C 1.35029 * 133.11197 * 180.02562 * 5 4 3 7 7 N 1.30909 * 109.37059 * 179.75529 * 6 5 4 8 8 C 1.33406 * 109.86814 * 0.24809 * 7 6 5 9 9 C 1.50698 * 126.26443 * 179.97438 * 8 7 6 10 10 H 1.08997 * 109.46994 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.47155 * 60.02549 * 9 8 7 12 12 C 1.50697 * 109.47155 * 300.02067 * 9 8 7 13 13 H 1.07995 * 120.00253 * 0.02562 * 12 9 8 14 14 C 1.37880 * 119.99676 * 180.02562 * 12 9 8 15 15 N 1.31517 * 120.00212 * 0.02562 * 14 12 9 16 16 Si 1.86804 * 119.99874 * 180.02562 * 14 12 9 17 17 H 1.48502 * 109.47001 * 60.00216 * 16 14 12 18 18 H 1.48495 * 109.47007 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46912 * 300.00042 * 16 14 12 20 20 C 1.37988 * 107.45956 * 359.97438 * 8 7 6 21 21 C 1.35883 * 120.11313 * 180.33988 * 2 1 3 22 22 H 1.08995 * 109.47574 * 89.99460 * 1 2 3 23 23 H 1.09003 * 109.47186 * 209.99836 * 1 2 3 24 24 H 1.09003 * 109.47490 * 329.99701 * 1 2 3 25 25 H 1.08001 * 119.69168 * 359.97438 * 3 2 1 26 26 H 1.07998 * 119.71730 * 179.97438 * 4 3 2 27 27 H 1.08002 * 125.31721 * 0.02793 * 6 5 4 28 28 H 1.09005 * 109.47011 * 179.97438 * 11 9 8 29 29 H 1.09003 * 109.47118 * 299.99321 * 11 9 8 30 30 H 1.08999 * 109.47272 * 59.99903 * 11 9 8 31 31 H 0.97001 * 119.99981 * 180.02562 * 15 14 12 32 32 H 1.08002 * 120.40889 * 359.55645 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2134 1.2181 0.0000 4 6 3.5601 1.2299 0.0005 5 7 4.2673 0.0558 0.0019 6 6 5.5878 -0.2262 0.0031 7 7 5.7545 -1.5246 0.0094 8 6 4.5679 -2.1341 0.0071 9 6 4.3301 -3.6222 0.0120 10 1 3.2580 -3.8188 0.0081 11 6 4.9563 -4.2346 1.2665 12 6 4.9577 -4.2352 -1.2133 13 1 5.4771 -3.6099 -1.9242 14 6 4.8686 -5.5945 -1.4266 15 7 4.2356 -6.3560 -0.5611 16 14 5.6471 -6.3546 -2.9451 17 1 7.1079 -6.0873 -2.9389 18 1 5.4116 -7.8207 -2.9409 19 1 5.0402 -5.7597 -4.1629 20 6 3.5982 -1.1524 -0.0006 21 6 2.1887 -1.1754 -0.0070 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5139 25 1 1.6702 2.1516 -0.0004 26 1 4.0873 2.1725 0.0001 27 1 6.3824 0.5053 0.0037 28 1 4.7839 -5.3109 1.2702 29 1 6.0285 -4.0381 1.2704 30 1 4.5024 -3.7912 2.1527 31 1 4.1733 -7.3123 -0.7110 32 1 1.6573 -2.1156 -0.0053 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260555814.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:29 Heat of formation + Delta-G solvation = 56.462088 kcal Electronic energy + Delta-G solvation = -15510.059868 eV Core-core repulsion = 13049.677476 eV Total energy + Delta-G solvation = -2460.382391 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.52875 -38.63163 -36.45425 -34.59841 -32.60863 -31.72864 -29.88371 -27.25866 -27.01324 -24.37527 -23.69311 -22.62528 -20.74794 -18.66914 -18.00872 -17.26107 -16.70068 -16.57607 -16.20566 -15.39315 -15.04120 -14.69989 -14.25930 -14.20835 -13.52469 -13.29962 -12.99356 -12.84269 -12.78520 -12.45209 -12.29977 -12.18613 -12.15570 -11.72660 -11.29801 -10.92881 -10.74972 -10.46390 -10.03882 -8.19198 -7.97364 -6.19830 0.03263 0.46495 1.39249 1.42309 1.50166 1.89988 2.31017 2.46227 2.59815 3.18355 3.66346 3.81776 3.94811 4.02155 4.15881 4.29283 4.63603 4.70882 4.85004 4.87712 4.91606 4.96371 5.07415 5.21678 5.25063 5.27410 5.54570 5.58014 5.77341 5.78788 5.90543 6.06359 6.37680 6.54284 6.83880 7.24477 7.45810 8.97146 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.030816 B = 0.007524 C = 0.006902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.392371 B = 3720.722896 C = 4055.804406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.095 4.095 3 C -0.134 4.134 4 C 0.041 3.959 5 N -0.377 5.377 6 C 0.127 3.873 7 N -0.491 5.491 8 C 0.019 3.981 9 C 0.121 3.879 10 H 0.013 0.987 11 C -0.112 4.112 12 C -0.514 4.514 13 H 0.037 0.963 14 C 0.014 3.986 15 N -0.917 5.917 16 Si 0.956 3.044 17 H -0.276 1.276 18 H -0.275 1.275 19 H -0.273 1.273 20 C -0.030 4.030 21 C -0.103 4.103 22 H 0.080 0.920 23 H 0.064 0.936 24 H 0.094 0.906 25 H 0.189 0.811 26 H 0.207 0.793 27 H 0.249 0.751 28 H 0.064 0.936 29 H 0.021 0.979 30 H 0.017 0.983 31 H 0.263 0.737 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.447 17.552 1.472 18.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.098 4.098 3 C -0.155 4.155 4 C -0.077 4.077 5 N -0.049 5.049 6 C -0.148 4.148 7 N -0.205 5.205 8 C -0.116 4.116 9 C 0.101 3.899 10 H 0.031 0.969 11 C -0.170 4.170 12 C -0.552 4.552 13 H 0.055 0.945 14 C -0.184 4.184 15 N -0.557 5.557 16 Si 0.781 3.219 17 H -0.202 1.202 18 H -0.200 1.200 19 H -0.199 1.199 20 C -0.138 4.138 21 C -0.123 4.123 22 H 0.098 0.902 23 H 0.083 0.917 24 H 0.113 0.887 25 H 0.206 0.794 26 H 0.224 0.776 27 H 0.265 0.735 28 H 0.083 0.917 29 H 0.040 0.960 30 H 0.036 0.964 31 H 0.073 0.927 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.614 17.079 1.514 18.042 hybrid contribution -0.029 -0.578 -0.707 0.913 sum -5.643 16.501 0.808 17.458 Atomic orbital electron populations 1.20780 0.88025 1.04008 1.03302 1.20162 0.98304 0.91822 0.99466 1.21185 0.92352 0.99607 1.02339 1.22440 0.93656 0.88705 1.02894 1.43047 1.07968 1.06608 1.47324 1.25621 0.83922 0.94107 1.11125 1.69785 1.28035 1.05385 1.17293 1.21561 0.87204 0.96562 1.06281 1.16961 0.94884 0.83682 0.94327 0.96902 1.21503 0.97909 1.02040 0.95533 1.21196 1.34733 0.92699 1.06600 0.94490 1.25685 0.95862 0.97354 0.99504 1.69984 1.43527 1.05401 1.36781 0.85656 0.78902 0.77443 0.79900 1.20151 1.19990 1.19873 1.19611 0.94278 0.86296 1.13577 1.20457 0.89431 1.00051 1.02387 0.90167 0.91741 0.88713 0.79406 0.77608 0.73537 0.91709 0.95952 0.96392 0.92741 0.85604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.86 10.02 71.23 0.71 -1.15 16 2 C -0.09 -2.43 5.89 -19.78 -0.12 -2.55 16 3 C -0.13 -2.63 9.66 22.08 0.21 -2.42 16 4 C 0.04 0.91 10.97 83.06 0.91 1.82 16 5 N -0.38 -12.65 2.94 -351.44 -1.03 -13.69 16 6 C 0.13 4.49 12.75 180.15 2.30 6.79 16 7 N -0.49 -23.43 11.20 -186.14 -2.08 -25.52 16 8 C 0.02 0.94 5.65 42.26 0.24 1.18 16 9 C 0.12 6.90 2.72 -12.29 -0.03 6.87 16 10 H 0.01 0.77 7.76 -2.39 -0.02 0.76 16 11 C -0.11 -6.19 8.95 71.98 0.64 -5.55 16 12 C -0.51 -31.50 8.55 25.60 0.22 -31.28 16 13 H 0.04 2.34 7.74 -2.91 -0.02 2.31 16 14 C 0.01 0.83 5.30 84.65 0.45 1.28 16 15 N -0.92 -55.32 11.32 21.45 0.24 -55.08 16 16 Si 0.96 46.64 29.54 68.60 2.03 48.66 16 17 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 18 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 19 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 20 C -0.03 -1.28 6.74 38.76 0.26 -1.02 16 21 C -0.10 -3.74 9.60 22.39 0.22 -3.52 16 22 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.06 1.21 8.08 -2.39 -0.02 1.19 16 24 H 0.09 1.12 8.10 -2.39 -0.02 1.10 16 25 H 0.19 1.83 8.06 -2.91 -0.02 1.81 16 26 H 0.21 2.32 8.06 -2.91 -0.02 2.29 16 27 H 0.25 5.78 8.06 -2.91 -0.02 5.76 16 28 H 0.06 3.79 6.07 -2.38 -0.01 3.78 16 29 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 32 H 0.13 4.75 7.83 -2.91 -0.02 4.73 16 Total: -1.00 -77.15 275.61 6.27 -70.88 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: 1.10 Total: 4.28 kcal Atomic # 6 Polarization: -35.55 SS G_CDS: 6.01 Total: -29.54 kcal Atomic # 7 Polarization: -91.41 SS G_CDS: -2.88 Total: -94.28 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.66 kcal Total: -77.15 6.27 -70.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260555814.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.343 kcal (2) G-P(sol) polarization free energy of solvation -77.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds