Wall clock time and date at job start Mon Mar 30 2020 03:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 109.47239 * 2 1 4 4 N 1.36636 * 125.02552 * 264.69640 * 3 2 1 5 5 H 0.97002 * 125.09836 * 359.97438 * 4 3 2 6 6 C 1.37624 * 109.80924 * 179.82004 * 4 3 2 7 7 C 1.39191 * 133.71597 * 180.11184 * 6 4 3 8 8 C 1.38310 * 118.28964 * 180.34014 * 7 6 4 9 9 C 1.38683 * 119.67116 * 0.02562 * 8 7 6 10 10 N 1.31533 * 121.27598 * 359.96681 * 9 8 7 11 11 C 1.32998 * 121.40509 * 0.06231 * 10 9 8 12 12 C 1.34358 * 125.03083 * 84.99396 * 3 2 1 13 13 C 1.50698 * 126.46112 * 0.02872 * 12 3 2 14 14 C 1.50704 * 109.47434 * 89.99068 * 13 12 3 15 15 H 1.07997 * 119.99411 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99661 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99542 * 180.02562 * 16 14 13 18 18 Si 1.86795 * 120.00429 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.46998 * 89.99685 * 18 16 14 20 20 H 1.48500 * 109.47158 * 209.99753 * 18 16 14 21 21 H 1.48497 * 109.47011 * 329.99711 * 18 16 14 22 22 H 1.09001 * 109.47002 * 60.00070 * 1 2 3 23 23 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47050 * 300.00336 * 1 2 3 25 25 H 1.09001 * 109.46998 * 119.99373 * 2 1 3 26 26 H 1.09000 * 109.47050 * 239.99664 * 2 1 3 27 27 H 1.08003 * 120.85837 * 0.32899 * 7 6 4 28 28 H 1.07997 * 120.16135 * 179.97438 * 8 7 6 29 29 H 1.08001 * 119.35931 * 179.97438 * 9 8 7 30 30 H 1.09002 * 109.47432 * 209.99605 * 13 12 3 31 31 H 1.09004 * 109.46765 * 329.99788 * 13 12 3 32 32 H 0.96995 * 120.00143 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3913 2.1257 -1.1141 5 1 2.3612 1.7865 -2.0224 6 6 2.7987 3.3902 -0.7548 7 6 3.2553 4.4933 -1.4704 8 6 3.5939 5.6357 -0.7682 9 6 3.4725 5.6538 0.6132 10 7 3.0392 4.6025 1.2744 11 6 2.7012 3.4798 0.6465 12 6 2.1990 2.1799 1.0960 13 6 1.9225 1.7703 2.5196 14 6 3.1650 1.1622 3.1178 15 1 4.0649 1.0810 2.5262 16 6 3.1529 0.7106 4.4204 17 7 4.2374 0.1804 4.9425 18 14 1.5966 0.8519 5.4437 19 1 0.7786 -0.3757 5.2725 20 1 1.9581 1.0102 6.8753 21 1 0.8158 2.0333 4.9967 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8934 -0.5137 0.8901 26 1 1.8934 -0.5139 -0.8900 27 1 3.3430 4.4581 -2.5463 28 1 3.9519 6.5091 -1.2929 29 1 3.7387 6.5484 1.1566 30 1 1.6311 2.6459 3.0997 31 1 1.1153 1.0380 2.5367 32 1 4.2289 -0.1376 5.8588 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260557911.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:59 Heat of formation + Delta-G solvation = 28.614351 kcal Electronic energy + Delta-G solvation = -15519.765092 eV Core-core repulsion = 13058.175132 eV Total energy + Delta-G solvation = -2461.589960 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.44781 -38.95187 -35.61264 -34.38126 -33.48995 -32.21239 -30.09045 -28.78920 -25.34480 -24.64588 -23.60433 -22.37381 -19.92478 -18.91871 -18.50278 -17.78895 -16.80192 -16.29344 -15.86379 -15.47153 -15.15010 -14.74743 -14.36836 -14.04613 -13.81104 -13.72890 -13.43090 -13.08093 -12.79782 -12.49251 -12.36680 -12.07516 -11.93352 -11.77529 -11.59365 -10.89293 -10.73465 -10.08667 -9.19453 -8.62384 -8.25091 -6.27292 0.16984 0.55202 1.34225 1.38803 1.51747 1.74897 2.15248 2.38829 3.08471 3.10332 3.45576 3.85690 4.07949 4.12015 4.21354 4.26994 4.36805 4.48474 4.78281 4.80088 4.87246 4.93910 5.04721 5.10526 5.18941 5.25313 5.38483 5.52879 5.57793 5.66452 5.88738 6.16376 6.34711 6.72023 6.78222 7.32747 7.35574 8.92000 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.023018 B = 0.009455 C = 0.007481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.158711 B = 2960.725653 C = 3741.747845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.059 4.059 3 C 0.092 3.908 4 N -0.571 5.571 5 H 0.432 0.568 6 C 0.034 3.966 7 C -0.083 4.083 8 C -0.153 4.153 9 C 0.066 3.934 10 N -0.497 5.497 11 C 0.055 3.945 12 C -0.161 4.161 13 C 0.067 3.933 14 C -0.502 4.502 15 H 0.018 0.982 16 C 0.006 3.994 17 N -0.952 5.952 18 Si 0.947 3.053 19 H -0.253 1.253 20 H -0.283 1.283 21 H -0.257 1.257 22 H 0.066 0.934 23 H 0.082 0.918 24 H 0.041 0.959 25 H 0.073 0.927 26 H 0.100 0.900 27 H 0.171 0.829 28 H 0.181 0.819 29 H 0.174 0.826 30 H 0.007 0.993 31 H 0.034 0.966 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.076 5.512 -16.679 18.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.097 4.097 3 C -0.018 4.018 4 N -0.177 5.177 5 H 0.272 0.728 6 C -0.076 4.076 7 C -0.112 4.112 8 C -0.174 4.174 9 C -0.101 4.101 10 N -0.206 5.206 11 C -0.077 4.077 12 C -0.168 4.168 13 C 0.029 3.971 14 C -0.541 4.541 15 H 0.036 0.964 16 C -0.190 4.190 17 N -0.594 5.594 18 Si 0.770 3.230 19 H -0.178 1.178 20 H -0.208 1.208 21 H -0.182 1.182 22 H 0.085 0.915 23 H 0.101 0.899 24 H 0.061 0.939 25 H 0.091 0.909 26 H 0.119 0.881 27 H 0.189 0.811 28 H 0.198 0.802 29 H 0.191 0.809 30 H 0.025 0.975 31 H 0.052 0.948 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.127 5.317 -15.719 18.060 hybrid contribution 0.149 -0.145 -0.104 0.232 sum -6.978 5.172 -15.823 18.050 Atomic orbital electron populations 1.21713 0.92830 1.03138 1.02008 1.20287 0.97410 0.87761 1.04254 1.20311 1.01329 0.95392 0.84755 1.41273 1.57968 1.09572 1.08887 0.72755 1.19300 1.04444 0.88885 0.95001 1.20914 0.99122 0.89824 1.01302 1.22223 1.01139 0.99461 0.94559 1.23172 0.97625 0.96021 0.93322 1.67008 1.11034 0.99996 1.42514 1.20283 1.03175 0.93705 0.90584 1.20328 1.08607 0.91955 0.95919 1.17816 0.95357 0.94905 0.88993 1.21121 0.97058 1.38360 0.97512 0.96356 1.25930 0.99877 0.94341 0.98810 1.70066 1.30448 1.43282 1.15574 0.85706 0.79741 0.80095 0.77471 1.17779 1.20849 1.18160 0.91467 0.89881 0.93940 0.90869 0.88132 0.81136 0.80168 0.80863 0.97493 0.94837 0.92543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 9.90 71.98 0.71 -2.71 16 2 C -0.06 -1.75 5.95 29.85 0.18 -1.58 16 3 C 0.09 3.36 6.33 40.92 0.26 3.62 16 4 N -0.57 -16.85 6.06 -175.89 -1.07 -17.92 16 5 H 0.43 8.44 8.96 -92.71 -0.83 7.61 16 6 C 0.03 1.16 7.29 39.08 0.28 1.44 16 7 C -0.08 -2.08 10.19 22.52 0.23 -1.85 16 8 C -0.15 -3.69 10.09 22.39 0.23 -3.47 16 9 C 0.07 2.14 11.16 84.84 0.95 3.08 16 10 N -0.50 -22.37 10.42 -185.10 -1.93 -24.29 16 11 C 0.05 2.47 7.49 41.72 0.31 2.78 16 12 C -0.16 -7.58 5.50 -18.62 -0.10 -7.68 16 13 C 0.07 3.57 4.17 29.10 0.12 3.70 16 14 C -0.50 -31.43 9.65 25.60 0.25 -31.19 16 15 H 0.02 1.28 7.98 -2.91 -0.02 1.26 16 16 C 0.01 0.40 5.47 84.65 0.46 0.86 16 17 N -0.95 -62.51 13.96 21.45 0.30 -62.21 16 18 Si 0.95 46.90 27.47 68.60 1.88 48.79 16 19 H -0.25 -11.53 7.11 99.48 0.71 -10.82 16 20 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 21 H -0.26 -12.42 6.54 99.48 0.65 -11.77 16 22 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.04 1.22 7.67 -2.39 -0.02 1.20 16 25 H 0.07 2.65 7.92 -2.39 -0.02 2.64 16 26 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 27 H 0.17 2.62 8.06 -2.91 -0.02 2.60 16 28 H 0.18 2.52 8.06 -2.91 -0.02 2.50 16 29 H 0.17 4.44 8.06 -2.91 -0.02 4.42 16 30 H 0.01 0.39 7.20 -2.39 -0.02 0.37 16 31 H 0.03 1.65 6.76 -2.39 -0.02 1.63 16 32 H 0.27 16.18 8.31 -92.71 -0.77 15.41 16 Total: -1.00 -82.67 275.26 3.31 -79.36 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: 0.24 Total: 9.27 kcal Atomic # 6 Polarization: -36.87 SS G_CDS: 3.88 Total: -32.99 kcal Atomic # 7 Polarization: -101.73 SS G_CDS: -2.70 Total: -104.43 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 1.88 Total: 48.79 kcal Total: -82.67 3.31 -79.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260557911.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.972 kcal (2) G-P(sol) polarization free energy of solvation -82.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds