Wall clock time and date at job start Mon Mar 30 2020 03:26:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.50697 * 109.47239 * 2 1
4 4 N 1.36636 * 125.02552 * 264.69640 * 3 2 1
5 5 H 0.97002 * 125.09836 * 359.97438 * 4 3 2
6 6 C 1.37624 * 109.80924 * 179.82004 * 4 3 2
7 7 C 1.39191 * 133.71597 * 180.11184 * 6 4 3
8 8 C 1.38310 * 118.28964 * 180.34014 * 7 6 4
9 9 C 1.38683 * 119.67116 * 0.02562 * 8 7 6
10 10 N 1.31533 * 121.27598 * 359.96681 * 9 8 7
11 11 C 1.32998 * 121.40509 * 0.06231 * 10 9 8
12 12 C 1.34358 * 125.03083 * 84.99396 * 3 2 1
13 13 C 1.50698 * 126.46112 * 0.02872 * 12 3 2
14 14 C 1.50704 * 109.47434 * 89.99068 * 13 12 3
15 15 H 1.07997 * 119.99411 * 0.02562 * 14 13 12
16 16 C 1.37874 * 119.99661 * 179.97438 * 14 13 12
17 17 N 1.31518 * 119.99542 * 180.02562 * 16 14 13
18 18 Si 1.86795 * 120.00429 * 0.02562 * 16 14 13
19 19 H 1.48502 * 109.46998 * 89.99685 * 18 16 14
20 20 H 1.48500 * 109.47158 * 209.99753 * 18 16 14
21 21 H 1.48497 * 109.47011 * 329.99711 * 18 16 14
22 22 H 1.09001 * 109.47002 * 60.00070 * 1 2 3
23 23 H 1.08993 * 109.46955 * 180.02562 * 1 2 3
24 24 H 1.09000 * 109.47050 * 300.00336 * 1 2 3
25 25 H 1.09001 * 109.46998 * 119.99373 * 2 1 3
26 26 H 1.09000 * 109.47050 * 239.99664 * 2 1 3
27 27 H 1.08003 * 120.85837 * 0.32899 * 7 6 4
28 28 H 1.07997 * 120.16135 * 179.97438 * 8 7 6
29 29 H 1.08001 * 119.35931 * 179.97438 * 9 8 7
30 30 H 1.09002 * 109.47432 * 209.99605 * 13 12 3
31 31 H 1.09004 * 109.46765 * 329.99788 * 13 12 3
32 32 H 0.96995 * 120.00143 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0324 1.4208 0.0000
4 7 2.3913 2.1257 -1.1141
5 1 2.3612 1.7865 -2.0224
6 6 2.7987 3.3902 -0.7548
7 6 3.2553 4.4933 -1.4704
8 6 3.5939 5.6357 -0.7682
9 6 3.4725 5.6538 0.6132
10 7 3.0392 4.6025 1.2744
11 6 2.7012 3.4798 0.6465
12 6 2.1990 2.1799 1.0960
13 6 1.9225 1.7703 2.5196
14 6 3.1650 1.1622 3.1178
15 1 4.0649 1.0810 2.5262
16 6 3.1529 0.7106 4.4204
17 7 4.2374 0.1804 4.9425
18 14 1.5966 0.8519 5.4437
19 1 0.7786 -0.3757 5.2725
20 1 1.9581 1.0102 6.8753
21 1 0.8158 2.0333 4.9967
22 1 -0.3633 0.5138 -0.8900
23 1 -0.3633 -1.0276 0.0005
24 1 -0.3633 0.5139 0.8900
25 1 1.8934 -0.5137 0.8901
26 1 1.8934 -0.5139 -0.8900
27 1 3.3430 4.4581 -2.5463
28 1 3.9519 6.5091 -1.2929
29 1 3.7387 6.5484 1.1566
30 1 1.6311 2.6459 3.0997
31 1 1.1153 1.0380 2.5367
32 1 4.2289 -0.1376 5.8588
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260557911.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:26:59
Heat of formation + Delta-G solvation = 28.614351 kcal
Electronic energy + Delta-G solvation = -15519.765092 eV
Core-core repulsion = 13058.175132 eV
Total energy + Delta-G solvation = -2461.589960 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 230.111 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-42.44781 -38.95187 -35.61264 -34.38126 -33.48995 -32.21239 -30.09045 -28.78920
-25.34480 -24.64588 -23.60433 -22.37381 -19.92478 -18.91871 -18.50278 -17.78895
-16.80192 -16.29344 -15.86379 -15.47153 -15.15010 -14.74743 -14.36836 -14.04613
-13.81104 -13.72890 -13.43090 -13.08093 -12.79782 -12.49251 -12.36680 -12.07516
-11.93352 -11.77529 -11.59365 -10.89293 -10.73465 -10.08667 -9.19453 -8.62384
-8.25091 -6.27292 0.16984 0.55202 1.34225 1.38803 1.51747 1.74897
2.15248 2.38829 3.08471 3.10332 3.45576 3.85690 4.07949 4.12015
4.21354 4.26994 4.36805 4.48474 4.78281 4.80088 4.87246 4.93910
5.04721 5.10526 5.18941 5.25313 5.38483 5.52879 5.57793 5.66452
5.88738 6.16376 6.34711 6.72023 6.78222 7.32747 7.35574 8.92000
Molecular weight = 230.11amu
Principal moments of inertia in cm(-1)
A = 0.023018 B = 0.009455 C = 0.007481
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1216.158711 B = 2960.725653 C = 3741.747845
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.059 4.059
3 C 0.092 3.908
4 N -0.571 5.571
5 H 0.432 0.568
6 C 0.034 3.966
7 C -0.083 4.083
8 C -0.153 4.153
9 C 0.066 3.934
10 N -0.497 5.497
11 C 0.055 3.945
12 C -0.161 4.161
13 C 0.067 3.933
14 C -0.502 4.502
15 H 0.018 0.982
16 C 0.006 3.994
17 N -0.952 5.952
18 Si 0.947 3.053
19 H -0.253 1.253
20 H -0.283 1.283
21 H -0.257 1.257
22 H 0.066 0.934
23 H 0.082 0.918
24 H 0.041 0.959
25 H 0.073 0.927
26 H 0.100 0.900
27 H 0.171 0.829
28 H 0.181 0.819
29 H 0.174 0.826
30 H 0.007 0.993
31 H 0.034 0.966
32 H 0.266 0.734
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.076 5.512 -16.679 18.938
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.097 4.097
3 C -0.018 4.018
4 N -0.177 5.177
5 H 0.272 0.728
6 C -0.076 4.076
7 C -0.112 4.112
8 C -0.174 4.174
9 C -0.101 4.101
10 N -0.206 5.206
11 C -0.077 4.077
12 C -0.168 4.168
13 C 0.029 3.971
14 C -0.541 4.541
15 H 0.036 0.964
16 C -0.190 4.190
17 N -0.594 5.594
18 Si 0.770 3.230
19 H -0.178 1.178
20 H -0.208 1.208
21 H -0.182 1.182
22 H 0.085 0.915
23 H 0.101 0.899
24 H 0.061 0.939
25 H 0.091 0.909
26 H 0.119 0.881
27 H 0.189 0.811
28 H 0.198 0.802
29 H 0.191 0.809
30 H 0.025 0.975
31 H 0.052 0.948
32 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -7.127 5.317 -15.719 18.060
hybrid contribution 0.149 -0.145 -0.104 0.232
sum -6.978 5.172 -15.823 18.050
Atomic orbital electron populations
1.21713 0.92830 1.03138 1.02008 1.20287 0.97410 0.87761 1.04254
1.20311 1.01329 0.95392 0.84755 1.41273 1.57968 1.09572 1.08887
0.72755 1.19300 1.04444 0.88885 0.95001 1.20914 0.99122 0.89824
1.01302 1.22223 1.01139 0.99461 0.94559 1.23172 0.97625 0.96021
0.93322 1.67008 1.11034 0.99996 1.42514 1.20283 1.03175 0.93705
0.90584 1.20328 1.08607 0.91955 0.95919 1.17816 0.95357 0.94905
0.88993 1.21121 0.97058 1.38360 0.97512 0.96356 1.25930 0.99877
0.94341 0.98810 1.70066 1.30448 1.43282 1.15574 0.85706 0.79741
0.80095 0.77471 1.17779 1.20849 1.18160 0.91467 0.89881 0.93940
0.90869 0.88132 0.81136 0.80168 0.80863 0.97493 0.94837 0.92543
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.42 9.90 71.98 0.71 -2.71 16
2 C -0.06 -1.75 5.95 29.85 0.18 -1.58 16
3 C 0.09 3.36 6.33 40.92 0.26 3.62 16
4 N -0.57 -16.85 6.06 -175.89 -1.07 -17.92 16
5 H 0.43 8.44 8.96 -92.71 -0.83 7.61 16
6 C 0.03 1.16 7.29 39.08 0.28 1.44 16
7 C -0.08 -2.08 10.19 22.52 0.23 -1.85 16
8 C -0.15 -3.69 10.09 22.39 0.23 -3.47 16
9 C 0.07 2.14 11.16 84.84 0.95 3.08 16
10 N -0.50 -22.37 10.42 -185.10 -1.93 -24.29 16
11 C 0.05 2.47 7.49 41.72 0.31 2.78 16
12 C -0.16 -7.58 5.50 -18.62 -0.10 -7.68 16
13 C 0.07 3.57 4.17 29.10 0.12 3.70 16
14 C -0.50 -31.43 9.65 25.60 0.25 -31.19 16
15 H 0.02 1.28 7.98 -2.91 -0.02 1.26 16
16 C 0.01 0.40 5.47 84.65 0.46 0.86 16
17 N -0.95 -62.51 13.96 21.45 0.30 -62.21 16
18 Si 0.95 46.90 27.47 68.60 1.88 48.79 16
19 H -0.25 -11.53 7.11 99.48 0.71 -10.82 16
20 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16
21 H -0.26 -12.42 6.54 99.48 0.65 -11.77 16
22 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16
23 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16
24 H 0.04 1.22 7.67 -2.39 -0.02 1.20 16
25 H 0.07 2.65 7.92 -2.39 -0.02 2.64 16
26 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16
27 H 0.17 2.62 8.06 -2.91 -0.02 2.60 16
28 H 0.18 2.52 8.06 -2.91 -0.02 2.50 16
29 H 0.17 4.44 8.06 -2.91 -0.02 4.42 16
30 H 0.01 0.39 7.20 -2.39 -0.02 0.37 16
31 H 0.03 1.65 6.76 -2.39 -0.02 1.63 16
32 H 0.27 16.18 8.31 -92.71 -0.77 15.41 16
Total: -1.00 -82.67 275.26 3.31 -79.36
By element:
Atomic # 1 Polarization: 9.03 SS G_CDS: 0.24 Total: 9.27 kcal
Atomic # 6 Polarization: -36.87 SS G_CDS: 3.88 Total: -32.99 kcal
Atomic # 7 Polarization: -101.73 SS G_CDS: -2.70 Total: -104.43 kcal
Atomic # 14 Polarization: 46.90 SS G_CDS: 1.88 Total: 48.79 kcal
Total: -82.67 3.31 -79.36 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260557911.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 107.972 kcal
(2) G-P(sol) polarization free energy of solvation -82.665 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.307 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.307 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.358 kcal
(6) G-S(sol) free energy of system = (1) + (5) 28.614 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds