Wall clock time and date at job start Mon Mar 30 2020 03:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30900 * 125.31230 * 2 1 4 4 C 1.33409 * 109.86732 * 179.82998 * 3 2 1 5 5 C 1.37990 * 107.45744 * 0.42923 * 4 3 2 6 6 C 1.40971 * 133.70644 * 179.72130 * 5 4 3 7 7 C 1.50703 * 120.41376 * 0.02562 * 6 5 4 8 8 H 1.09001 * 109.46900 * 0.02562 * 7 6 5 9 9 C 1.53005 * 109.47165 * 240.02687 * 7 6 5 10 10 C 1.50694 * 109.47123 * 120.02441 * 7 6 5 11 11 H 1.07997 * 120.00319 * 359.97438 * 10 7 6 12 12 C 1.37879 * 119.99749 * 180.02562 * 10 7 6 13 13 N 1.31509 * 120.00204 * 359.97438 * 12 10 7 14 14 Si 1.86801 * 119.99685 * 179.97438 * 12 10 7 15 15 H 1.48501 * 109.47455 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47368 * 119.99739 * 14 12 10 17 17 H 1.48505 * 109.46768 * 239.99575 * 14 12 10 18 18 C 1.35884 * 119.17698 * 180.02562 * 6 5 4 19 19 C 1.40814 * 119.76773 * 359.97438 * 18 6 5 20 20 C 1.34661 * 120.62222 * 0.02562 * 19 18 6 21 21 N 1.35032 * 125.31365 * 180.30744 * 2 1 3 22 22 H 1.09001 * 109.46953 * 269.69259 * 1 2 3 23 23 H 1.09000 * 109.47318 * 29.68856 * 1 2 3 24 24 H 1.09000 * 109.47161 * 149.69487 * 1 2 3 25 25 H 1.07998 * 126.26760 * 180.15273 * 4 3 2 26 26 H 1.09000 * 109.47471 * 59.99238 * 9 7 6 27 27 H 1.08994 * 109.47024 * 179.97438 * 9 7 6 28 28 H 1.09001 * 109.46718 * 299.99507 * 9 7 6 29 29 H 0.96999 * 120.00164 * 179.97438 * 13 12 10 30 30 H 1.08002 * 120.11161 * 180.02562 * 18 6 5 31 31 H 1.08000 * 119.68409 * 179.97438 * 19 18 6 32 32 H 1.07997 * 119.72155 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2637 1.0682 0.0000 4 6 3.5496 0.7129 0.0037 5 6 3.5981 -0.6661 -0.0037 6 6 4.6508 -1.6038 -0.0091 7 6 6.0849 -1.1408 -0.0067 8 1 6.1149 -0.0512 -0.0001 9 6 6.7915 -1.6628 -1.2594 10 6 6.7815 -1.6699 1.2203 11 1 6.2399 -2.2801 1.9279 12 6 8.1102 -1.3741 1.4402 13 7 8.7696 -0.6307 0.5788 14 14 8.9735 -2.0295 2.9616 15 1 8.0179 -2.8330 3.7656 16 1 10.1173 -2.8836 2.5524 17 1 9.4716 -0.8923 3.7765 18 6 4.3563 -2.9303 -0.0166 19 6 3.0115 -3.3479 -0.0182 20 6 2.0128 -2.4447 -0.0130 21 7 2.2876 -1.1018 -0.0059 22 1 -0.3633 -0.0055 1.0277 23 1 -0.3634 0.8927 -0.5090 24 1 -0.3633 -0.8872 -0.5186 25 1 4.3973 1.3821 0.0069 26 1 6.2876 -1.2801 -2.1470 27 1 7.8286 -1.3275 -1.2579 28 1 6.7615 -2.7524 -1.2660 29 1 9.7042 -0.4223 0.7337 30 1 5.1509 -3.6617 -0.0204 31 1 2.7790 -4.4026 -0.0246 32 1 0.9865 -2.7812 -0.0147 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260569179.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:37 Heat of formation + Delta-G solvation = 72.005965 kcal Electronic energy + Delta-G solvation = -15634.531548 eV Core-core repulsion = 13174.823190 eV Total energy + Delta-G solvation = -2459.708358 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.26978 -37.22851 -34.95879 -32.58029 -31.02969 -30.69796 -28.31522 -26.01046 -25.19706 -23.33226 -21.76488 -21.33619 -19.19361 -16.94357 -16.47810 -15.78170 -15.50078 -15.01716 -14.71688 -13.90436 -13.33453 -12.99225 -12.96122 -12.67863 -12.29367 -11.77162 -11.63855 -11.37600 -11.27677 -10.97485 -10.96003 -10.44104 -10.17636 -9.79808 -9.71377 -9.58572 -9.00251 -8.58087 -8.42800 -6.76428 -6.06773 -4.14238 1.45335 1.81121 3.09007 3.26162 3.34628 3.38490 3.48896 4.09500 4.40044 4.73603 4.85975 5.08609 5.24419 5.39797 5.50130 5.57961 5.62503 5.78175 5.82060 6.11458 6.25266 6.44240 6.68701 6.74812 6.92168 7.05169 7.12001 7.16576 7.32134 7.64177 7.71651 7.86964 8.01359 8.29011 8.38482 8.87671 9.50580 10.98817 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.035345 B = 0.007479 C = 0.007101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.011270 B = 3743.145018 C = 3941.973757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.132 3.868 3 N -0.459 5.459 4 C -0.015 4.015 5 C 0.011 3.989 6 C 0.025 3.975 7 C 0.077 3.923 8 H 0.041 0.959 9 C -0.131 4.131 10 C -0.508 4.508 11 H 0.058 0.942 12 C 0.064 3.936 13 N -0.887 5.887 14 Si 0.894 3.106 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.283 1.283 18 C -0.157 4.157 19 C -0.107 4.107 20 C -0.005 4.005 21 N -0.356 5.356 22 H 0.072 0.928 23 H 0.085 0.915 24 H 0.066 0.934 25 H 0.180 0.820 26 H 0.010 0.990 27 H 0.089 0.911 28 H 0.030 0.970 29 H 0.262 0.738 30 H 0.135 0.865 31 H 0.137 0.863 32 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.858 -3.812 -2.023 12.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.122 4.122 3 N -0.174 5.174 4 C -0.170 4.170 5 C -0.098 4.098 6 C 0.022 3.978 7 C 0.058 3.942 8 H 0.060 0.940 9 C -0.188 4.188 10 C -0.546 4.546 11 H 0.077 0.923 12 C -0.138 4.138 13 N -0.526 5.526 14 Si 0.722 3.278 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.209 1.209 18 C -0.178 4.178 19 C -0.128 4.128 20 C -0.124 4.124 21 N -0.027 5.027 22 H 0.091 0.909 23 H 0.104 0.896 24 H 0.085 0.915 25 H 0.197 0.803 26 H 0.029 0.971 27 H 0.107 0.893 28 H 0.049 0.951 29 H 0.072 0.928 30 H 0.153 0.847 31 H 0.155 0.845 32 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -12.175 -2.930 -2.056 12.690 hybrid contribution 0.850 -1.273 0.880 1.765 sum -11.325 -4.203 -1.175 12.137 Atomic orbital electron populations 1.20000 0.85241 1.03278 1.02752 1.22929 0.95257 0.80060 1.13960 1.69877 1.02760 1.27684 1.17072 1.22531 0.93989 0.91083 1.09432 1.19866 0.83414 0.95648 1.10877 1.20201 0.96183 0.91266 0.90111 1.17865 0.83657 0.97386 0.95325 0.94045 1.21800 1.03598 0.98619 0.94831 1.21098 0.95251 1.32422 1.05869 0.92342 1.24941 0.97347 0.94957 0.96553 1.69884 1.10011 1.37340 1.35327 0.86499 0.79533 0.78786 0.83010 1.19780 1.20928 1.20914 1.20866 0.95267 0.96318 1.05329 1.20833 0.92833 0.99062 1.00045 1.21226 1.00370 0.80648 1.10143 1.42626 1.08151 1.05873 1.46065 0.90945 0.89604 0.91538 0.80268 0.97127 0.89272 0.95098 0.92841 0.84670 0.84479 0.83114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.64 10.33 36.01 0.37 -0.27 16 2 C 0.13 2.30 7.96 -155.09 -1.23 1.06 16 3 N -0.46 -9.13 11.19 -10.11 -0.11 -9.24 16 4 C -0.02 -0.32 11.50 -16.96 -0.19 -0.51 16 5 C 0.01 0.23 6.65 -84.10 -0.56 -0.33 16 6 C 0.02 0.53 4.76 -104.43 -0.50 0.04 16 7 C 0.08 1.88 2.50 -92.92 -0.23 1.64 16 8 H 0.04 1.09 7.15 -51.93 -0.37 0.72 16 9 C -0.13 -3.06 8.78 37.16 0.33 -2.74 16 10 C -0.51 -13.51 8.24 -34.44 -0.28 -13.79 16 11 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 12 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 13 N -0.89 -24.57 11.32 55.43 0.63 -23.94 16 14 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 15 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 C -0.16 -3.00 8.75 -39.45 -0.35 -3.34 16 19 C -0.11 -1.63 9.97 -39.87 -0.40 -2.02 16 20 C 0.00 -0.07 10.80 -16.48 -0.18 -0.25 16 21 N -0.36 -6.51 2.94 -58.16 -0.17 -6.68 16 22 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.07 0.63 8.04 -51.93 -0.42 0.22 16 25 H 0.18 3.58 7.65 -52.49 -0.40 3.18 16 26 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.09 2.29 6.07 -51.93 -0.32 1.97 16 28 H 0.03 0.68 7.41 -51.93 -0.38 0.29 16 29 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 30 H 0.14 2.55 7.57 -52.49 -0.40 2.15 16 31 H 0.14 1.56 8.06 -52.49 -0.42 1.13 16 32 H 0.15 1.63 7.98 -52.49 -0.42 1.21 16 LS Contribution 272.12 15.07 4.10 4.10 Total: -1.00 -30.04 272.12 -7.83 -37.87 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -3.93 Total: 0.95 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: -3.32 Total: -18.89 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.34 Total: -39.86 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.04 -7.83 -37.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260569179.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.874 kcal (2) G-P(sol) polarization free energy of solvation -30.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds