Wall clock time and date at job start Mon Mar 30 2020 03:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30900 * 125.31230 * 2 1 4 4 C 1.33409 * 109.86732 * 179.82998 * 3 2 1 5 5 C 1.37990 * 107.45744 * 0.42923 * 4 3 2 6 6 C 1.40971 * 133.70644 * 179.72130 * 5 4 3 7 7 C 1.50703 * 120.41376 * 0.02562 * 6 5 4 8 8 H 1.09001 * 109.46900 * 0.02562 * 7 6 5 9 9 C 1.53005 * 109.47165 * 240.02687 * 7 6 5 10 10 C 1.50694 * 109.47123 * 120.02441 * 7 6 5 11 11 H 1.07997 * 120.00319 * 359.97438 * 10 7 6 12 12 C 1.37879 * 119.99749 * 180.02562 * 10 7 6 13 13 N 1.31509 * 120.00204 * 359.97438 * 12 10 7 14 14 Si 1.86801 * 119.99685 * 179.97438 * 12 10 7 15 15 H 1.48501 * 109.47455 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47368 * 119.99739 * 14 12 10 17 17 H 1.48505 * 109.46768 * 239.99575 * 14 12 10 18 18 C 1.35884 * 119.17698 * 180.02562 * 6 5 4 19 19 C 1.40814 * 119.76773 * 359.97438 * 18 6 5 20 20 C 1.34661 * 120.62222 * 0.02562 * 19 18 6 21 21 N 1.35032 * 125.31365 * 180.30744 * 2 1 3 22 22 H 1.09001 * 109.46953 * 269.69259 * 1 2 3 23 23 H 1.09000 * 109.47318 * 29.68856 * 1 2 3 24 24 H 1.09000 * 109.47161 * 149.69487 * 1 2 3 25 25 H 1.07998 * 126.26760 * 180.15273 * 4 3 2 26 26 H 1.09000 * 109.47471 * 59.99238 * 9 7 6 27 27 H 1.08994 * 109.47024 * 179.97438 * 9 7 6 28 28 H 1.09001 * 109.46718 * 299.99507 * 9 7 6 29 29 H 0.96999 * 120.00164 * 179.97438 * 13 12 10 30 30 H 1.08002 * 120.11161 * 180.02562 * 18 6 5 31 31 H 1.08000 * 119.68409 * 179.97438 * 19 18 6 32 32 H 1.07997 * 119.72155 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2637 1.0682 0.0000 4 6 3.5496 0.7129 0.0037 5 6 3.5981 -0.6661 -0.0037 6 6 4.6508 -1.6038 -0.0091 7 6 6.0849 -1.1408 -0.0067 8 1 6.1149 -0.0512 -0.0001 9 6 6.7915 -1.6628 -1.2594 10 6 6.7815 -1.6699 1.2203 11 1 6.2399 -2.2801 1.9279 12 6 8.1102 -1.3741 1.4402 13 7 8.7696 -0.6307 0.5788 14 14 8.9735 -2.0295 2.9616 15 1 8.0179 -2.8330 3.7656 16 1 10.1173 -2.8836 2.5524 17 1 9.4716 -0.8923 3.7765 18 6 4.3563 -2.9303 -0.0166 19 6 3.0115 -3.3479 -0.0182 20 6 2.0128 -2.4447 -0.0130 21 7 2.2876 -1.1018 -0.0059 22 1 -0.3633 -0.0055 1.0277 23 1 -0.3634 0.8927 -0.5090 24 1 -0.3633 -0.8872 -0.5186 25 1 4.3973 1.3821 0.0069 26 1 6.2876 -1.2801 -2.1470 27 1 7.8286 -1.3275 -1.2579 28 1 6.7615 -2.7524 -1.2660 29 1 9.7042 -0.4223 0.7337 30 1 5.1509 -3.6617 -0.0204 31 1 2.7790 -4.4026 -0.0246 32 1 0.9865 -2.7812 -0.0147 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260569179.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:37 Heat of formation + Delta-G solvation = 55.799366 kcal Electronic energy + Delta-G solvation = -15635.234319 eV Core-core repulsion = 13174.823190 eV Total energy + Delta-G solvation = -2460.411129 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.67158 -38.70056 -36.62688 -34.31564 -32.33912 -32.24156 -29.83383 -27.30796 -27.24033 -24.86049 -23.21193 -22.91215 -20.73385 -18.54058 -18.08605 -17.36595 -16.90292 -16.74602 -16.17076 -15.40781 -14.85048 -14.62327 -14.24359 -13.91577 -13.53800 -13.36076 -13.08461 -12.93953 -12.89207 -12.81906 -12.56127 -12.24164 -12.10916 -11.44449 -11.35654 -11.24216 -10.81840 -10.48893 -10.03578 -8.23347 -8.07005 -6.25976 0.07633 0.41602 1.40152 1.42456 1.53281 1.77834 2.08425 2.40809 2.66661 3.16529 3.53757 3.67461 3.88475 4.12130 4.18364 4.32734 4.50254 4.67566 4.75433 4.84780 4.89965 4.97084 5.05892 5.14743 5.20437 5.31402 5.45844 5.59888 5.63860 5.79155 6.00794 6.03669 6.28896 6.44555 6.81488 6.94777 7.41849 8.93480 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.035345 B = 0.007479 C = 0.007101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.011270 B = 3743.145018 C = 3941.973757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C 0.144 3.856 3 N -0.485 5.485 4 C -0.052 4.052 5 C -0.007 4.007 6 C -0.023 4.023 7 C 0.080 3.920 8 H 0.005 0.995 9 C -0.119 4.119 10 C -0.520 4.520 11 H 0.052 0.948 12 C 0.016 3.984 13 N -0.916 5.916 14 Si 0.956 3.044 15 H -0.268 1.268 16 H -0.275 1.275 17 H -0.283 1.283 18 C -0.143 4.143 19 C -0.116 4.116 20 C 0.015 3.985 21 N -0.365 5.365 22 H 0.091 0.909 23 H 0.094 0.906 24 H 0.100 0.900 25 H 0.165 0.835 26 H 0.019 0.981 27 H 0.062 0.938 28 H 0.039 0.961 29 H 0.263 0.737 30 H 0.132 0.868 31 H 0.186 0.814 32 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.770 -6.155 -1.580 16.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.111 4.111 3 N -0.201 5.201 4 C -0.206 4.206 5 C -0.117 4.117 6 C -0.025 4.025 7 C 0.060 3.940 8 H 0.023 0.977 9 C -0.177 4.177 10 C -0.558 4.558 11 H 0.071 0.929 12 C -0.183 4.183 13 N -0.555 5.555 14 Si 0.781 3.219 15 H -0.193 1.193 16 H -0.201 1.201 17 H -0.209 1.209 18 C -0.163 4.163 19 C -0.136 4.136 20 C -0.103 4.103 21 N -0.036 5.036 22 H 0.110 0.890 23 H 0.113 0.887 24 H 0.118 0.882 25 H 0.182 0.818 26 H 0.038 0.962 27 H 0.081 0.919 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.150 0.850 31 H 0.204 0.796 32 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -15.078 -5.270 -1.617 16.054 hybrid contribution 1.610 -0.572 0.720 1.854 sum -13.467 -5.842 -0.897 14.707 Atomic orbital electron populations 1.20304 0.80797 1.05418 1.04640 1.24093 0.97337 0.79130 1.10584 1.69840 1.02419 1.29412 1.18392 1.22439 0.94526 0.91640 1.11977 1.19767 0.84955 0.95458 1.11471 1.19845 0.94662 0.92766 0.95276 1.17619 0.86275 0.95098 0.94959 0.97721 1.21624 1.01917 0.98985 0.95128 1.21354 0.95620 1.32212 1.06588 0.92946 1.25709 0.98104 0.95254 0.99258 1.70014 1.10227 1.38359 1.36896 0.85535 0.78529 0.78162 0.79626 1.19257 1.20088 1.20937 1.21092 0.97635 0.94915 1.02706 1.21267 0.90676 1.01679 1.00015 1.22244 1.03056 0.78901 1.06133 1.42901 1.06874 1.07456 1.46390 0.89003 0.88719 0.88174 0.81789 0.96158 0.91902 0.94167 0.92801 0.85046 0.79642 0.77508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.01 10.33 71.24 0.74 -0.28 16 2 C 0.14 4.68 7.96 138.02 1.10 5.78 16 3 N -0.49 -19.46 11.19 -185.91 -2.08 -21.54 16 4 C -0.05 -2.32 11.50 84.39 0.97 -1.35 16 5 C -0.01 -0.29 6.65 38.77 0.26 -0.03 16 6 C -0.02 -1.04 4.76 -19.74 -0.09 -1.14 16 7 C 0.08 4.10 2.50 -12.28 -0.03 4.07 16 8 H 0.00 0.27 7.15 -2.39 -0.02 0.25 16 9 C -0.12 -5.80 8.78 71.98 0.63 -5.17 16 10 C -0.52 -28.57 8.24 25.60 0.21 -28.35 16 11 H 0.05 2.86 7.60 -2.91 -0.02 2.84 16 12 C 0.02 0.86 5.30 84.66 0.45 1.31 16 13 N -0.92 -52.69 11.32 21.45 0.24 -52.44 16 14 Si 0.96 43.45 29.54 68.60 2.03 45.48 16 15 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 16 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 17 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 18 C -0.14 -5.25 8.75 22.35 0.20 -5.06 16 19 C -0.12 -3.05 9.97 22.08 0.22 -2.83 16 20 C 0.01 0.37 10.80 83.05 0.90 1.27 16 21 N -0.37 -12.47 2.94 -337.92 -0.99 -13.46 16 22 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 23 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.10 1.26 8.04 -2.39 -0.02 1.24 16 25 H 0.16 7.37 7.65 -2.91 -0.02 7.35 16 26 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.06 3.38 6.07 -2.39 -0.01 3.37 16 28 H 0.04 1.81 7.41 -2.39 -0.02 1.80 16 29 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 30 H 0.13 4.83 7.57 -2.91 -0.02 4.80 16 31 H 0.19 3.04 8.06 -2.91 -0.02 3.02 16 32 H 0.21 2.84 7.98 -2.91 -0.02 2.81 16 Total: -1.00 -69.23 272.12 5.85 -63.38 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 1.11 Total: 10.36 kcal Atomic # 6 Polarization: -37.31 SS G_CDS: 5.54 Total: -31.77 kcal Atomic # 7 Polarization: -84.62 SS G_CDS: -2.83 Total: -87.45 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -69.23 5.85 -63.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260569179.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.183 kcal (2) G-P(sol) polarization free energy of solvation -69.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds