Wall clock time and date at job start Mon Mar 30 2020 03:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30907 * 125.31202 * 2 1 4 4 C 1.33396 * 109.86759 * 179.97438 * 3 2 1 5 5 C 1.38002 * 107.46305 * 0.02562 * 4 3 2 6 6 C 1.40967 * 133.70607 * 179.70847 * 5 4 3 7 7 C 1.50700 * 120.41726 * 0.29780 * 6 5 4 8 8 H 1.08994 * 109.46880 * 0.02562 * 7 6 5 9 9 C 1.53001 * 109.46868 * 119.99961 * 7 6 5 10 10 C 1.50693 * 109.47316 * 239.99981 * 7 6 5 11 11 H 1.08003 * 120.00090 * 359.97438 * 10 7 6 12 12 C 1.37873 * 120.00401 * 179.97438 * 10 7 6 13 13 N 1.31516 * 120.00445 * 179.97438 * 12 10 7 14 14 Si 1.86804 * 119.99806 * 0.02562 * 12 10 7 15 15 H 1.48501 * 109.47127 * 89.99634 * 14 12 10 16 16 H 1.48494 * 109.47015 * 209.99862 * 14 12 10 17 17 H 1.48498 * 109.46725 * 329.99867 * 14 12 10 18 18 C 1.35882 * 119.17215 * 179.83697 * 6 5 4 19 19 C 1.40821 * 119.77020 * 0.48388 * 18 6 5 20 20 C 1.34664 * 120.61673 * 359.74911 * 19 18 6 21 21 N 1.35031 * 125.31347 * 179.97438 * 2 1 3 22 22 H 1.09004 * 109.47099 * 270.03400 * 1 2 3 23 23 H 1.08999 * 109.47295 * 30.03852 * 1 2 3 24 24 H 1.09002 * 109.47095 * 150.03731 * 1 2 3 25 25 H 1.08006 * 126.26982 * 180.02562 * 4 3 2 26 26 H 1.08999 * 109.46831 * 180.02562 * 9 7 6 27 27 H 1.09004 * 109.47309 * 299.99682 * 9 7 6 28 28 H 1.08994 * 109.47523 * 60.00199 * 9 7 6 29 29 H 0.97002 * 120.00039 * 179.97438 * 13 12 10 30 30 H 1.07995 * 120.11486 * 180.21873 * 18 6 5 31 31 H 1.08001 * 119.69068 * 179.77894 * 19 18 6 32 32 H 1.07999 * 119.72286 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2637 1.0682 0.0000 4 6 3.5495 0.7130 0.0006 5 6 3.5981 -0.6662 0.0003 6 6 4.6508 -1.6037 -0.0045 7 6 6.0849 -1.1407 -0.0043 8 1 6.1148 -0.0511 0.0003 9 6 6.7932 -1.6752 1.2421 10 6 6.7798 -1.6575 -1.2375 11 1 6.2374 -2.2614 -1.9500 12 6 8.1081 -1.3596 -1.4564 13 7 8.7147 -1.8111 -2.5324 14 14 9.0465 -0.3158 -0.2238 15 1 9.6690 -1.1958 0.7977 16 1 10.1054 0.4504 -0.9287 17 1 8.1111 0.6277 0.4395 18 6 4.3564 -2.9302 0.0002 19 6 3.0115 -3.3480 -0.0005 20 6 2.0128 -2.4447 -0.0007 21 7 2.2876 -1.1019 0.0005 22 1 -0.3633 0.0006 1.0277 23 1 -0.3634 0.8896 -0.5144 24 1 -0.3633 -0.8903 -0.5133 25 1 4.3972 1.3822 0.0011 26 1 7.8303 -1.3399 1.2424 27 1 6.2906 -1.3012 2.1341 28 1 6.7633 -2.7647 1.2379 29 1 9.6491 -1.6012 -2.6865 30 1 5.1509 -3.6616 0.0002 31 1 2.7790 -4.4027 -0.0003 32 1 0.9865 -2.7811 -0.0008 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260569193.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:38 Heat of formation + Delta-G solvation = 80.633978 kcal Electronic energy + Delta-G solvation = -15689.517818 eV Core-core repulsion = 13230.183599 eV Total energy + Delta-G solvation = -2459.334219 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.36465 -37.37228 -35.14878 -32.56138 -31.21973 -31.01707 -28.83922 -26.10961 -25.14521 -23.51862 -21.86802 -21.45260 -19.20713 -17.21589 -16.56917 -15.97829 -15.63553 -15.17101 -14.79391 -14.04455 -13.45899 -13.14878 -12.99666 -12.83858 -12.38242 -12.28191 -11.92152 -11.78855 -11.47849 -11.21513 -11.02670 -10.39776 -10.07152 -9.86244 -9.78686 -9.46907 -9.16489 -8.70974 -8.61100 -6.85584 -6.13735 -4.14799 1.35298 1.72571 3.00291 3.23616 3.35439 3.37263 3.40753 3.99631 4.35230 4.66825 4.78468 5.00051 5.18500 5.32657 5.41129 5.51460 5.52949 5.64555 5.75414 5.96277 6.12756 6.22196 6.31282 6.41899 6.54957 6.66336 6.79401 6.98186 7.00870 7.16794 7.44731 7.59418 7.65627 8.29716 8.41960 8.88717 9.46147 10.98709 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.036300 B = 0.008068 C = 0.007360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.174480 B = 3469.739910 C = 3803.269072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.135 3.865 3 N -0.457 5.457 4 C -0.019 4.019 5 C 0.012 3.988 6 C 0.026 3.974 7 C 0.045 3.955 8 H 0.041 0.959 9 C -0.143 4.143 10 C -0.511 4.511 11 H 0.077 0.923 12 C 0.073 3.927 13 N -0.896 5.896 14 Si 0.886 3.114 15 H -0.278 1.278 16 H -0.296 1.296 17 H -0.264 1.264 18 C -0.147 4.147 19 C -0.108 4.108 20 C 0.002 3.998 21 N -0.356 5.356 22 H 0.072 0.928 23 H 0.086 0.914 24 H 0.067 0.933 25 H 0.179 0.821 26 H 0.044 0.956 27 H 0.031 0.969 28 H 0.056 0.944 29 H 0.265 0.735 30 H 0.138 0.862 31 H 0.140 0.860 32 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.573 -1.321 6.832 14.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.119 4.119 3 N -0.172 5.172 4 C -0.174 4.174 5 C -0.097 4.097 6 C 0.024 3.976 7 C 0.026 3.974 8 H 0.059 0.941 9 C -0.200 4.200 10 C -0.548 4.548 11 H 0.095 0.905 12 C -0.129 4.129 13 N -0.534 5.534 14 Si 0.716 3.284 15 H -0.205 1.205 16 H -0.223 1.223 17 H -0.189 1.189 18 C -0.167 4.167 19 C -0.129 4.129 20 C -0.118 4.118 21 N -0.027 5.027 22 H 0.091 0.909 23 H 0.105 0.895 24 H 0.086 0.914 25 H 0.196 0.804 26 H 0.063 0.937 27 H 0.050 0.950 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.156 0.844 31 H 0.158 0.842 32 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -12.899 -0.522 6.721 14.554 hybrid contribution 1.000 -0.446 0.463 1.189 sum -11.898 -0.967 7.184 13.933 Atomic orbital electron populations 1.20014 0.85118 1.03450 1.02761 1.22951 0.95304 0.79968 1.13691 1.69873 1.02689 1.27690 1.16956 1.22488 0.94077 0.90983 1.09829 1.19777 0.83502 0.95548 1.10866 1.19662 0.94924 0.91361 0.91689 1.18272 0.86510 0.97251 0.95417 0.94098 1.22176 0.99403 1.01339 0.97130 1.20884 0.95545 1.33601 1.04804 0.90520 1.24968 0.97414 0.95255 0.95257 1.69878 1.11723 1.45243 1.26519 0.86860 0.79706 0.80891 0.80904 1.20501 1.22348 1.18907 1.20905 0.95530 0.96196 1.04085 1.20848 0.92681 0.99241 1.00104 1.21283 1.00512 0.80575 1.09407 1.42617 1.08051 1.05932 1.46102 0.90919 0.89517 0.91418 0.80428 0.93701 0.94952 0.92532 0.92463 0.84370 0.84220 0.82914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.62 10.33 36.01 0.37 -0.24 16 2 C 0.13 2.26 7.96 -155.09 -1.23 1.03 16 3 N -0.46 -8.76 11.19 -10.11 -0.11 -8.88 16 4 C -0.02 -0.37 11.50 -16.96 -0.19 -0.57 16 5 C 0.01 0.25 6.65 -84.09 -0.56 -0.31 16 6 C 0.03 0.54 4.76 -104.43 -0.50 0.04 16 7 C 0.04 1.03 2.09 -92.93 -0.19 0.84 16 8 H 0.04 0.96 6.21 -51.93 -0.32 0.64 16 9 C -0.14 -3.00 8.48 37.16 0.32 -2.68 16 10 C -0.51 -13.87 8.83 -34.45 -0.30 -14.17 16 11 H 0.08 2.28 7.86 -52.48 -0.41 1.87 16 12 C 0.07 2.05 5.45 -17.82 -0.10 1.96 16 13 N -0.90 -26.79 13.96 55.43 0.77 -26.02 16 14 Si 0.89 21.37 24.37 -169.99 -4.14 17.22 16 15 H -0.28 -6.49 6.87 56.52 0.39 -6.10 16 16 H -0.30 -7.20 7.11 56.52 0.40 -6.80 16 17 H -0.26 -6.08 6.53 56.52 0.37 -5.71 16 18 C -0.15 -2.70 8.76 -39.45 -0.35 -3.04 16 19 C -0.11 -1.58 9.97 -39.87 -0.40 -1.97 16 20 C 0.00 0.02 10.80 -16.48 -0.18 -0.15 16 21 N -0.36 -6.25 2.94 -58.16 -0.17 -6.43 16 22 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 24 H 0.07 0.62 8.04 -51.93 -0.42 0.20 16 25 H 0.18 3.32 7.65 -52.48 -0.40 2.92 16 26 H 0.04 0.98 3.27 -51.93 -0.17 0.81 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 1.12 7.38 -51.93 -0.38 0.74 16 29 H 0.27 7.45 8.31 -40.82 -0.34 7.12 16 30 H 0.14 2.52 7.56 -52.49 -0.40 2.13 16 31 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 32 H 0.15 1.56 7.98 -52.49 -0.42 1.14 16 LS Contribution 265.29 15.07 4.00 4.00 Total: -1.00 -31.67 265.29 -6.77 -38.43 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -3.79 Total: 0.96 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: -3.31 Total: -19.29 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: 0.49 Total: -41.32 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.14 Total: 17.22 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -31.67 -6.77 -38.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260569193.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.068 kcal (2) G-P(sol) polarization free energy of solvation -31.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds