Wall clock time and date at job start Mon Mar 30 2020 03:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30907 * 125.31202 * 2 1 4 4 C 1.33396 * 109.86759 * 179.97438 * 3 2 1 5 5 C 1.38002 * 107.46305 * 0.02562 * 4 3 2 6 6 C 1.40967 * 133.70607 * 179.70847 * 5 4 3 7 7 C 1.50700 * 120.41726 * 0.29780 * 6 5 4 8 8 H 1.08994 * 109.46880 * 0.02562 * 7 6 5 9 9 C 1.53001 * 109.46868 * 119.99961 * 7 6 5 10 10 C 1.50693 * 109.47316 * 239.99981 * 7 6 5 11 11 H 1.08003 * 120.00090 * 359.97438 * 10 7 6 12 12 C 1.37873 * 120.00401 * 179.97438 * 10 7 6 13 13 N 1.31516 * 120.00445 * 179.97438 * 12 10 7 14 14 Si 1.86804 * 119.99806 * 0.02562 * 12 10 7 15 15 H 1.48501 * 109.47127 * 89.99634 * 14 12 10 16 16 H 1.48494 * 109.47015 * 209.99862 * 14 12 10 17 17 H 1.48498 * 109.46725 * 329.99867 * 14 12 10 18 18 C 1.35882 * 119.17215 * 179.83697 * 6 5 4 19 19 C 1.40821 * 119.77020 * 0.48388 * 18 6 5 20 20 C 1.34664 * 120.61673 * 359.74911 * 19 18 6 21 21 N 1.35031 * 125.31347 * 179.97438 * 2 1 3 22 22 H 1.09004 * 109.47099 * 270.03400 * 1 2 3 23 23 H 1.08999 * 109.47295 * 30.03852 * 1 2 3 24 24 H 1.09002 * 109.47095 * 150.03731 * 1 2 3 25 25 H 1.08006 * 126.26982 * 180.02562 * 4 3 2 26 26 H 1.08999 * 109.46831 * 180.02562 * 9 7 6 27 27 H 1.09004 * 109.47309 * 299.99682 * 9 7 6 28 28 H 1.08994 * 109.47523 * 60.00199 * 9 7 6 29 29 H 0.97002 * 120.00039 * 179.97438 * 13 12 10 30 30 H 1.07995 * 120.11486 * 180.21873 * 18 6 5 31 31 H 1.08001 * 119.69068 * 179.77894 * 19 18 6 32 32 H 1.07999 * 119.72286 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2637 1.0682 0.0000 4 6 3.5495 0.7130 0.0006 5 6 3.5981 -0.6662 0.0003 6 6 4.6508 -1.6037 -0.0045 7 6 6.0849 -1.1407 -0.0043 8 1 6.1148 -0.0511 0.0003 9 6 6.7932 -1.6752 1.2421 10 6 6.7798 -1.6575 -1.2375 11 1 6.2374 -2.2614 -1.9500 12 6 8.1081 -1.3596 -1.4564 13 7 8.7147 -1.8111 -2.5324 14 14 9.0465 -0.3158 -0.2238 15 1 9.6690 -1.1958 0.7977 16 1 10.1054 0.4504 -0.9287 17 1 8.1111 0.6277 0.4395 18 6 4.3564 -2.9302 0.0002 19 6 3.0115 -3.3480 -0.0005 20 6 2.0128 -2.4447 -0.0007 21 7 2.2876 -1.1019 0.0005 22 1 -0.3633 0.0006 1.0277 23 1 -0.3634 0.8896 -0.5144 24 1 -0.3633 -0.8903 -0.5133 25 1 4.3972 1.3822 0.0011 26 1 7.8303 -1.3399 1.2424 27 1 6.2906 -1.3012 2.1341 28 1 6.7633 -2.7647 1.2379 29 1 9.6491 -1.6012 -2.6865 30 1 5.1509 -3.6616 0.0002 31 1 2.7790 -4.4027 -0.0003 32 1 0.9865 -2.7811 -0.0008 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260569193.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:38 Heat of formation + Delta-G solvation = 61.311254 kcal Electronic energy + Delta-G solvation = -15690.355714 eV Core-core repulsion = 13230.183599 eV Total energy + Delta-G solvation = -2460.172116 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.69872 -38.79291 -36.73019 -34.37045 -32.78709 -32.27577 -30.19843 -27.35132 -27.11636 -24.99965 -23.25419 -22.94318 -20.69984 -18.93647 -18.10493 -17.46261 -17.02003 -16.80741 -16.20709 -15.55476 -14.94165 -14.82446 -14.27581 -14.13284 -13.91765 -13.53410 -13.33335 -13.16039 -12.95564 -12.83053 -12.58112 -12.12394 -11.84133 -11.44889 -11.33400 -11.24527 -10.98123 -10.73693 -10.06478 -8.32158 -8.19922 -6.35452 0.03187 0.39224 1.30296 1.37558 1.47171 1.75273 2.07360 2.31519 2.59839 3.04750 3.52885 3.62218 3.83972 4.07239 4.14623 4.18038 4.40553 4.57419 4.66352 4.69807 4.75613 4.82246 4.92843 5.04299 5.07905 5.10534 5.23194 5.44694 5.56908 5.59265 5.75547 5.86190 6.26918 6.40797 6.69181 6.93227 7.28997 8.85235 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.036300 B = 0.008068 C = 0.007360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.174480 B = 3469.739910 C = 3803.269072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.145 3.855 3 N -0.484 5.484 4 C -0.051 4.051 5 C -0.007 4.007 6 C -0.020 4.020 7 C 0.048 3.952 8 H 0.029 0.971 9 C -0.139 4.139 10 C -0.507 4.507 11 H 0.035 0.965 12 C 0.017 3.983 13 N -0.946 5.946 14 Si 0.946 3.054 15 H -0.261 1.261 16 H -0.299 1.299 17 H -0.250 1.250 18 C -0.138 4.138 19 C -0.119 4.119 20 C 0.020 3.980 21 N -0.366 5.366 22 H 0.095 0.905 23 H 0.093 0.907 24 H 0.097 0.903 25 H 0.172 0.828 26 H 0.036 0.964 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.267 0.733 30 H 0.130 0.870 31 H 0.185 0.815 32 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.269 -2.097 8.517 17.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.110 4.110 3 N -0.199 5.199 4 C -0.204 4.204 5 C -0.117 4.117 6 C -0.022 4.022 7 C 0.028 3.972 8 H 0.048 0.952 9 C -0.196 4.196 10 C -0.545 4.545 11 H 0.053 0.947 12 C -0.180 4.180 13 N -0.586 5.586 14 Si 0.772 3.228 15 H -0.187 1.187 16 H -0.227 1.227 17 H -0.174 1.174 18 C -0.159 4.159 19 C -0.139 4.139 20 C -0.098 4.098 21 N -0.037 5.037 22 H 0.113 0.887 23 H 0.112 0.888 24 H 0.116 0.884 25 H 0.190 0.810 26 H 0.055 0.945 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.148 0.852 31 H 0.202 0.798 32 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -15.599 -1.296 8.426 17.776 hybrid contribution 1.640 -0.291 -0.123 1.670 sum -13.959 -1.588 8.302 16.319 Atomic orbital electron populations 1.20307 0.80907 1.05293 1.04764 1.24077 0.97323 0.79109 1.10472 1.69853 1.02510 1.29269 1.18293 1.22534 0.94716 0.91444 1.11736 1.19711 0.84857 0.95460 1.11628 1.19422 0.93850 0.92650 0.96321 1.18082 0.88424 0.96372 0.94291 0.95240 1.22076 0.98726 1.01712 0.97046 1.21104 0.95497 1.32306 1.05605 0.94653 1.25792 0.98527 0.96653 0.97075 1.70025 1.12215 1.47490 1.28867 0.85892 0.78357 0.79641 0.78866 1.18706 1.22714 1.17366 1.21116 0.97696 0.95069 1.01993 1.21254 0.90696 1.01719 1.00244 1.22243 1.03035 0.78954 1.05566 1.42898 1.06970 1.07407 1.46425 0.88661 0.88837 0.88442 0.81040 0.94524 0.92498 0.91969 0.92427 0.85194 0.79794 0.77501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.98 10.33 71.24 0.74 -0.24 16 2 C 0.15 4.50 7.96 138.01 1.10 5.60 16 3 N -0.48 -18.30 11.19 -185.90 -2.08 -20.38 16 4 C -0.05 -2.08 11.50 84.40 0.97 -1.11 16 5 C -0.01 -0.28 6.65 38.77 0.26 -0.02 16 6 C -0.02 -0.86 4.76 -19.74 -0.09 -0.95 16 7 C 0.05 2.24 2.09 -12.29 -0.03 2.22 16 8 H 0.03 1.43 6.21 -2.39 -0.01 1.42 16 9 C -0.14 -5.72 8.48 71.98 0.61 -5.11 16 10 C -0.51 -28.70 8.83 25.60 0.23 -28.47 16 11 H 0.04 2.22 7.86 -2.91 -0.02 2.20 16 12 C 0.02 0.98 5.45 84.65 0.46 1.44 16 13 N -0.95 -58.81 13.96 21.45 0.30 -58.51 16 14 Si 0.95 44.75 24.37 68.60 1.67 46.43 16 15 H -0.26 -11.58 6.87 99.48 0.68 -10.90 16 16 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 17 H -0.25 -11.11 6.53 99.48 0.65 -10.46 16 18 C -0.14 -4.96 8.76 22.35 0.20 -4.76 16 19 C -0.12 -3.07 9.97 22.08 0.22 -2.84 16 20 C 0.02 0.49 10.80 83.06 0.90 1.39 16 21 N -0.37 -11.92 2.94 -337.91 -0.99 -12.92 16 22 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 23 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.10 1.19 8.04 -2.39 -0.02 1.17 16 25 H 0.17 6.83 7.65 -2.91 -0.02 6.81 16 26 H 0.04 1.55 3.27 -2.39 -0.01 1.54 16 27 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 28 H 0.06 2.44 7.38 -2.39 -0.02 2.42 16 29 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 30 H 0.13 4.76 7.56 -2.91 -0.02 4.73 16 31 H 0.18 3.04 8.06 -2.91 -0.02 3.02 16 32 H 0.21 2.71 7.98 -2.91 -0.02 2.68 16 Total: -1.00 -72.91 265.29 5.49 -67.42 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: 1.04 Total: 10.82 kcal Atomic # 6 Polarization: -38.41 SS G_CDS: 5.55 Total: -32.86 kcal Atomic # 7 Polarization: -89.03 SS G_CDS: -2.78 Total: -91.81 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.67 Total: 46.43 kcal Total: -72.91 5.49 -67.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260569193.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.730 kcal (2) G-P(sol) polarization free energy of solvation -72.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds