Wall clock time and date at job start Mon Mar 30 2020 02:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35902 * 117.00263 * 2 1 4 4 C 1.38999 * 120.08310 * 0.02562 * 3 2 1 5 5 C 1.38231 * 120.04606 * 180.02562 * 4 3 2 6 6 C 1.37981 * 120.43615 * 359.95078 * 5 4 3 7 7 C 1.39717 * 120.01639 * 0.02562 * 6 5 4 8 8 C 1.37858 * 120.02352 * 179.88685 * 3 2 1 9 9 C 1.50922 * 133.35861 * 0.20641 * 8 3 2 10 10 C 1.51093 * 105.53193 * 179.84905 * 9 8 3 11 11 C 1.50697 * 125.86791 * 179.97438 * 10 9 8 12 12 C 1.50707 * 109.47313 * 275.00068 * 11 10 9 13 13 H 1.08002 * 119.99943 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00241 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99565 * 0.02562 * 14 12 11 16 16 Si 1.86791 * 120.00266 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47288 * 89.99780 * 16 14 12 18 18 H 1.48492 * 109.47359 * 210.00172 * 16 14 12 19 19 H 1.48511 * 109.46953 * 330.00167 * 16 14 12 20 20 C 1.32151 * 108.26015 * 359.95945 * 10 9 8 21 21 H 1.08998 * 109.47373 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47126 * 299.99947 * 1 2 3 23 23 H 1.09003 * 109.47025 * 59.99449 * 1 2 3 24 24 H 1.07994 * 119.97642 * 359.97438 * 4 3 2 25 25 H 1.07997 * 119.78463 * 179.97438 * 5 4 3 26 26 H 1.08001 * 119.99225 * 180.02562 * 6 5 4 27 27 H 1.09002 * 110.25228 * 60.80922 * 9 8 3 28 28 H 1.09002 * 110.24613 * 298.89075 * 9 8 3 29 29 H 1.09003 * 109.47379 * 35.00178 * 11 10 9 30 30 H 1.09001 * 109.47263 * 155.00555 * 11 10 9 31 31 H 0.97007 * 119.99826 * 179.97438 * 15 14 12 32 32 H 1.08007 * 124.46220 * 179.97438 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2907 2.3777 0.0005 5 6 1.9191 3.6090 0.0000 6 6 3.2965 3.6907 0.0000 7 6 4.0659 2.5244 -0.0001 8 6 3.4227 1.2835 0.0024 9 6 4.5153 0.2423 0.0013 10 6 5.8124 1.0171 0.0016 11 6 7.1967 0.4214 0.0013 12 6 7.6092 0.1085 1.4166 13 1 6.9361 0.3194 2.2345 14 6 8.8455 -0.4482 1.6673 15 7 9.6649 -0.7055 0.6713 16 14 9.3565 -0.8367 3.4214 17 1 8.9402 -2.2205 3.7634 18 1 10.8316 -0.7188 3.5449 19 1 8.7039 0.1204 4.3507 20 6 5.5244 2.3068 0.0018 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 0.2122 2.3224 0.0005 25 1 1.3282 4.5129 0.0000 26 1 3.7800 4.6564 0.0000 27 1 4.4457 -0.3766 -0.8933 28 1 4.4461 -0.3780 0.8949 29 1 7.1977 -0.4953 -0.5886 30 1 7.8986 1.1335 -0.4327 31 1 10.5348 -1.0968 0.8477 32 1 6.2604 3.0974 0.0024 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260570962.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:10 Heat of formation + Delta-G solvation = -1.680555 kcal Electronic energy + Delta-G solvation = -15025.887480 eV Core-core repulsion = 12530.691083 eV Total energy + Delta-G solvation = -2495.196396 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.29086 -38.18544 -35.52438 -32.98058 -30.50309 -29.88101 -27.65373 -26.58252 -26.35494 -23.22167 -21.18589 -20.79147 -18.25593 -17.03608 -16.35455 -15.95005 -15.67909 -15.21568 -14.56959 -14.12274 -13.81564 -13.74315 -12.65978 -12.33312 -12.26030 -12.01397 -11.76941 -11.52670 -11.08949 -11.04386 -10.94893 -10.63609 -10.57985 -10.27425 -9.75643 -9.57525 -9.09376 -8.43685 -7.97264 -7.38237 -6.06053 -4.10412 1.36620 1.71641 3.11645 3.30437 3.36805 3.41717 3.42223 4.24684 4.44416 4.77021 4.95554 5.11480 5.14655 5.21995 5.28902 5.36152 5.45894 5.63982 5.74925 5.88945 6.09695 6.23947 6.38522 6.43407 6.59125 6.66848 6.96507 7.05828 7.11599 7.41939 7.56240 7.60757 7.83553 7.89615 8.28662 8.94316 9.53639 11.03625 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.034933 B = 0.005867 C = 0.005481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.336714 B = 4771.167384 C = 5107.390721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.317 6.317 3 C 0.147 3.853 4 C -0.228 4.228 5 C -0.084 4.084 6 C -0.154 4.154 7 C -0.002 4.002 8 C -0.147 4.147 9 C -0.055 4.055 10 C -0.034 4.034 11 C 0.058 3.942 12 C -0.513 4.513 13 H 0.058 0.942 14 C 0.059 3.941 15 N -0.894 5.894 16 Si 0.897 3.103 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.273 1.273 20 C -0.196 4.196 21 H 0.096 0.904 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.123 0.877 25 H 0.120 0.880 26 H 0.119 0.881 27 H 0.094 0.906 28 H 0.102 0.898 29 H 0.033 0.967 30 H 0.035 0.965 31 H 0.263 0.737 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.113 4.563 -1.960 16.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.231 6.231 3 C 0.102 3.898 4 C -0.246 4.246 5 C -0.102 4.102 6 C -0.172 4.172 7 C -0.002 4.002 8 C -0.148 4.148 9 C -0.091 4.091 10 C -0.034 4.034 11 C 0.022 3.978 12 C -0.552 4.552 13 H 0.077 0.923 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.724 3.276 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.198 1.198 20 C -0.214 4.214 21 H 0.114 0.886 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.141 0.859 25 H 0.138 0.862 26 H 0.137 0.863 27 H 0.112 0.888 28 H 0.120 0.880 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -15.862 4.295 -2.001 16.555 hybrid contribution -0.010 0.024 0.971 0.971 sum -15.872 4.318 -1.030 16.481 Atomic orbital electron populations 1.22985 0.79129 1.03501 1.01006 1.86109 1.20750 1.27242 1.88952 1.18143 0.90221 0.84105 0.97347 1.21002 0.99217 0.92141 1.12289 1.20639 0.94183 0.96605 0.98755 1.20725 0.93168 0.97440 1.05859 1.19837 0.94113 0.91971 0.94295 1.19796 0.90664 0.97302 1.07051 1.19858 0.89395 0.96688 1.03115 1.23283 0.96872 0.94171 0.89110 1.18103 0.85390 0.96396 0.97927 1.21020 1.00955 1.41405 0.91774 0.92344 1.25000 0.96413 0.95505 0.97336 1.69956 1.08924 1.43472 1.30890 0.86511 0.77668 0.78806 0.84598 1.20537 1.21118 1.19769 1.21422 0.91366 0.97227 1.11423 0.88583 0.92944 0.92976 0.85880 0.86228 0.86293 0.88770 0.88049 0.94859 0.94708 0.92768 0.85653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.32 -4.82 10.49 -19.43 -0.20 -5.02 16 3 C 0.15 2.42 6.66 -39.44 -0.26 2.15 16 4 C -0.23 -3.19 9.05 -39.30 -0.36 -3.55 16 5 C -0.08 -1.15 10.01 -39.68 -0.40 -1.55 16 6 C -0.15 -2.42 10.10 -39.12 -0.40 -2.81 16 7 C 0.00 -0.04 6.23 -105.01 -0.65 -0.69 16 8 C -0.15 -2.76 6.32 -104.08 -0.66 -3.42 16 9 C -0.05 -1.08 6.74 -28.73 -0.19 -1.27 16 10 C -0.03 -0.76 5.54 -101.08 -0.56 -1.32 16 11 C 0.06 1.50 5.48 -29.03 -0.16 1.34 16 12 C -0.51 -14.34 9.09 -34.44 -0.31 -14.66 16 13 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 16 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 20 C -0.20 -4.01 10.63 -37.75 -0.40 -4.41 16 21 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 23 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 24 H 0.12 1.35 6.31 -52.49 -0.33 1.02 16 25 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 26 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 27 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 28 H 0.10 2.02 8.14 -51.93 -0.42 1.60 16 29 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.13 2.43 8.06 -52.48 -0.42 2.01 16 LS Contribution 278.33 15.07 4.19 4.19 Total: -1.00 -30.47 278.33 -7.80 -38.27 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -4.05 Total: -1.08 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: -3.46 Total: -27.33 kcal Atomic # 7 Polarization: -26.24 SS G_CDS: 0.74 Total: -25.50 kcal Atomic # 8 Polarization: -4.82 SS G_CDS: -0.20 Total: -5.02 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.47 -7.80 -38.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260570962.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.586 kcal (2) G-P(sol) polarization free energy of solvation -30.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds