Wall clock time and date at job start Mon Mar 30 2020 02:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35902 * 117.00263 * 2 1 4 4 C 1.38999 * 120.08310 * 0.02562 * 3 2 1 5 5 C 1.38231 * 120.04606 * 180.02562 * 4 3 2 6 6 C 1.37981 * 120.43615 * 359.95078 * 5 4 3 7 7 C 1.39717 * 120.01639 * 0.02562 * 6 5 4 8 8 C 1.37858 * 120.02352 * 179.88685 * 3 2 1 9 9 C 1.50922 * 133.35861 * 0.20641 * 8 3 2 10 10 C 1.51093 * 105.53193 * 179.84905 * 9 8 3 11 11 C 1.50697 * 125.86791 * 179.97438 * 10 9 8 12 12 C 1.50707 * 109.47313 * 275.00068 * 11 10 9 13 13 H 1.08002 * 119.99943 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00241 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99565 * 0.02562 * 14 12 11 16 16 Si 1.86791 * 120.00266 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47288 * 89.99780 * 16 14 12 18 18 H 1.48492 * 109.47359 * 210.00172 * 16 14 12 19 19 H 1.48511 * 109.46953 * 330.00167 * 16 14 12 20 20 C 1.32151 * 108.26015 * 359.95945 * 10 9 8 21 21 H 1.08998 * 109.47373 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47126 * 299.99947 * 1 2 3 23 23 H 1.09003 * 109.47025 * 59.99449 * 1 2 3 24 24 H 1.07994 * 119.97642 * 359.97438 * 4 3 2 25 25 H 1.07997 * 119.78463 * 179.97438 * 5 4 3 26 26 H 1.08001 * 119.99225 * 180.02562 * 6 5 4 27 27 H 1.09002 * 110.25228 * 60.80922 * 9 8 3 28 28 H 1.09002 * 110.24613 * 298.89075 * 9 8 3 29 29 H 1.09003 * 109.47379 * 35.00178 * 11 10 9 30 30 H 1.09001 * 109.47263 * 155.00555 * 11 10 9 31 31 H 0.97007 * 119.99826 * 179.97438 * 15 14 12 32 32 H 1.08007 * 124.46220 * 179.97438 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2907 2.3777 0.0005 5 6 1.9191 3.6090 0.0000 6 6 3.2965 3.6907 0.0000 7 6 4.0659 2.5244 -0.0001 8 6 3.4227 1.2835 0.0024 9 6 4.5153 0.2423 0.0013 10 6 5.8124 1.0171 0.0016 11 6 7.1967 0.4214 0.0013 12 6 7.6092 0.1085 1.4166 13 1 6.9361 0.3194 2.2345 14 6 8.8455 -0.4482 1.6673 15 7 9.6649 -0.7055 0.6713 16 14 9.3565 -0.8367 3.4214 17 1 8.9402 -2.2205 3.7634 18 1 10.8316 -0.7188 3.5449 19 1 8.7039 0.1204 4.3507 20 6 5.5244 2.3068 0.0018 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 0.2122 2.3224 0.0005 25 1 1.3282 4.5129 0.0000 26 1 3.7800 4.6564 0.0000 27 1 4.4457 -0.3766 -0.8933 28 1 4.4461 -0.3780 0.8949 29 1 7.1977 -0.4953 -0.5886 30 1 7.8986 1.1335 -0.4327 31 1 10.5348 -1.0968 0.8477 32 1 6.2604 3.0974 0.0024 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260570962.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:09 Heat of formation + Delta-G solvation = -18.556153 kcal Electronic energy + Delta-G solvation = -15026.619261 eV Core-core repulsion = 12530.691083 eV Total energy + Delta-G solvation = -2495.928177 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.54480 -39.42182 -36.90507 -35.02168 -31.97084 -31.37371 -28.94429 -28.03162 -27.65800 -25.16509 -22.46177 -22.06095 -19.75249 -18.52757 -18.32891 -17.19226 -16.69393 -16.52476 -16.33437 -15.42212 -15.27422 -15.05549 -14.30228 -13.92672 -13.80049 -13.50896 -13.10289 -12.91875 -12.76646 -12.56084 -12.32423 -12.09056 -12.07125 -11.77113 -11.63960 -11.61129 -10.61236 -10.57493 -9.26061 -8.82477 -8.20864 -6.35609 0.02449 0.50981 1.39321 1.40989 1.51889 1.64041 2.40639 2.43137 2.95970 3.08724 3.46993 3.75785 4.00191 4.08531 4.29141 4.43651 4.47338 4.52518 4.57292 4.68416 4.75006 4.76059 4.85131 5.04701 5.17141 5.28823 5.35904 5.52170 5.64696 5.71025 5.73882 5.88472 6.05519 6.20041 6.50500 6.75959 7.33067 8.87563 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.034933 B = 0.005867 C = 0.005481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.336714 B = 4771.167384 C = 5107.390721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.341 6.341 3 C 0.136 3.864 4 C -0.212 4.212 5 C -0.075 4.075 6 C -0.154 4.154 7 C -0.034 4.034 8 C -0.170 4.170 9 C -0.046 4.046 10 C -0.076 4.076 11 C 0.069 3.931 12 C -0.533 4.533 13 H 0.054 0.946 14 C 0.007 3.993 15 N -0.929 5.929 16 Si 0.967 3.033 17 H -0.270 1.270 18 H -0.277 1.277 19 H -0.267 1.267 20 C -0.179 4.179 21 H 0.115 0.885 22 H 0.067 0.933 23 H 0.069 0.931 24 H 0.162 0.838 25 H 0.164 0.836 26 H 0.139 0.861 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.010 0.990 30 H 0.011 0.989 31 H 0.267 0.733 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.975 5.913 -1.027 19.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.255 6.255 3 C 0.091 3.909 4 C -0.231 4.231 5 C -0.092 4.092 6 C -0.172 4.172 7 C -0.034 4.034 8 C -0.171 4.171 9 C -0.082 4.082 10 C -0.076 4.076 11 C 0.032 3.968 12 C -0.570 4.570 13 H 0.072 0.928 14 C -0.192 4.192 15 N -0.568 5.568 16 Si 0.791 3.209 17 H -0.196 1.196 18 H -0.202 1.202 19 H -0.192 1.192 20 C -0.197 4.197 21 H 0.133 0.867 22 H 0.086 0.914 23 H 0.087 0.913 24 H 0.179 0.821 25 H 0.181 0.819 26 H 0.157 0.843 27 H 0.112 0.888 28 H 0.106 0.894 29 H 0.029 0.971 30 H 0.029 0.971 31 H 0.076 0.924 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -18.745 5.645 -1.072 19.606 hybrid contribution 0.702 -0.326 0.624 0.994 sum -18.043 5.319 -0.449 18.816 Atomic orbital electron populations 1.23359 0.76324 1.05470 1.02481 1.86085 1.23683 1.26980 1.88791 1.18317 0.89629 0.85612 0.97308 1.21497 1.01038 0.91145 1.09379 1.21154 0.93492 0.98223 0.96375 1.21065 0.94232 0.97121 1.04746 1.19820 0.92841 0.93455 0.97264 1.19845 0.91753 0.96617 1.08843 1.19675 0.89157 0.96876 1.02503 1.22934 0.95961 0.95423 0.93315 1.17792 0.87513 0.94905 0.96615 1.21334 1.01330 1.41677 0.92702 0.92768 1.25911 0.96292 0.95093 1.01868 1.70074 1.09395 1.44124 1.33222 0.85417 0.77495 0.78883 0.79099 1.19568 1.20249 1.19159 1.21627 0.93241 0.96487 1.08337 0.86687 0.91448 0.91268 0.82090 0.81868 0.84295 0.88798 0.89424 0.97139 0.97095 0.92421 0.85500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.40 16 2 O -0.34 -9.78 10.49 -92.45 -0.97 -10.75 16 3 C 0.14 4.23 6.66 22.36 0.15 4.38 16 4 C -0.21 -5.01 9.05 22.45 0.20 -4.81 16 5 C -0.07 -1.69 10.01 22.21 0.22 -1.47 16 6 C -0.15 -4.39 10.10 22.57 0.23 -4.17 16 7 C -0.03 -1.24 6.23 -20.12 -0.13 -1.37 16 8 C -0.17 -6.36 6.32 -19.51 -0.12 -6.48 16 9 C -0.05 -1.92 6.74 29.30 0.20 -1.72 16 10 C -0.08 -3.56 5.54 -17.32 -0.10 -3.66 16 11 C 0.07 3.77 5.48 29.10 0.16 3.93 16 12 C -0.53 -31.09 9.09 25.60 0.23 -30.85 16 13 H 0.05 3.13 7.74 -2.91 -0.02 3.10 16 14 C 0.01 0.39 5.46 84.65 0.46 0.86 16 15 N -0.93 -56.30 13.29 21.45 0.28 -56.01 16 16 Si 0.97 44.76 29.54 68.60 2.03 46.79 16 17 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 18 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 19 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 20 C -0.18 -7.56 10.63 23.71 0.25 -7.30 16 21 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 22 H 0.07 0.91 7.66 -2.39 -0.02 0.89 16 23 H 0.07 0.90 7.66 -2.39 -0.02 0.89 16 24 H 0.16 2.55 6.31 -2.91 -0.02 2.53 16 25 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 26 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 27 H 0.09 3.72 8.14 -2.39 -0.02 3.70 16 28 H 0.09 3.74 8.14 -2.39 -0.02 3.72 16 29 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.27 15.11 8.31 -92.70 -0.77 14.34 16 32 H 0.13 5.11 8.06 -2.91 -0.02 5.09 16 Total: -1.00 -68.43 278.33 5.32 -63.11 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: 1.11 Total: 8.13 kcal Atomic # 6 Polarization: -54.14 SS G_CDS: 2.87 Total: -51.27 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: 0.28 Total: -56.01 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: -0.97 Total: -10.75 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -68.43 5.32 -63.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260570962.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.557 kcal (2) G-P(sol) polarization free energy of solvation -68.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds