Wall clock time and date at job start Mon Mar 30 2020 03:07:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50694 * 1
3 3 N 1.33406 * 126.27318 * 2 1
4 4 C 1.30904 * 109.87081 * 179.97438 * 3 2 1
5 5 N 1.35035 * 109.37202 * 359.97438 * 4 3 2
6 6 C 1.37061 * 133.11462 * 180.02562 * 5 4 3
7 7 C 1.34675 * 120.55852 * 179.97438 * 6 5 4
8 8 C 1.40815 * 120.61542 * 359.79490 * 7 6 5
9 9 C 1.35886 * 119.77134 * 0.45942 * 8 7 6
10 10 C 1.50695 * 120.40899 * 179.80163 * 9 8 7
11 11 H 1.09006 * 109.46892 * 173.53133 * 10 9 8
12 12 C 1.53004 * 109.47172 * 293.52657 * 10 9 8
13 13 C 1.50696 * 109.47421 * 53.52987 * 10 9 8
14 14 H 1.08001 * 119.99819 * 359.97438 * 13 10 9
15 15 C 1.37874 * 120.00158 * 179.71782 * 13 10 9
16 16 N 1.31513 * 120.00083 * 0.28435 * 15 13 10
17 17 Si 1.86797 * 120.00163 * 180.27408 * 15 13 10
18 18 H 1.48504 * 109.47211 * 0.02562 * 17 15 13
19 19 H 1.48503 * 109.46909 * 120.00487 * 17 15 13
20 20 H 1.48496 * 109.47573 * 240.00463 * 17 15 13
21 21 C 1.38003 * 126.27213 * 179.97438 * 2 1 3
22 22 H 1.09000 * 109.47468 * 263.19517 * 1 2 3
23 23 H 1.09005 * 109.47176 * 23.19838 * 1 2 3
24 24 H 1.09005 * 109.47350 * 143.19929 * 1 2 3
25 25 H 1.08000 * 125.31197 * 180.02562 * 4 3 2
26 26 H 1.07997 * 119.72657 * 0.02562 * 6 5 4
27 27 H 1.08001 * 119.69093 * 180.02562 * 7 6 5
28 28 H 1.07998 * 120.11498 * 180.23436 * 8 7 6
29 29 H 1.09004 * 109.46773 * 180.02562 * 12 10 9
30 30 H 1.08996 * 109.47475 * 300.00497 * 12 10 9
31 31 H 1.08999 * 109.46475 * 60.00513 * 12 10 9
32 32 H 0.97000 * 120.00561 * 179.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 7 2.2962 1.0755 0.0000
4 6 3.5520 0.7059 0.0006
5 7 3.6219 -0.6427 0.0015
6 6 4.6697 -1.5263 0.0028
7 6 4.4454 -2.8543 0.0041
8 6 3.1310 -3.3596 0.0084
9 6 2.0780 -2.5008 0.0019
10 6 0.6655 -3.0259 0.0019
11 1 -0.0311 -2.1947 0.1120
12 6 0.3906 -3.7502 -1.3175
13 6 0.4866 -3.9865 1.1491
14 1 1.3133 -4.1962 1.8117
15 6 -0.7338 -4.5937 1.3560
16 7 -1.7404 -4.3388 0.5488
17 14 -0.9577 -5.7786 2.7826
18 1 0.3170 -5.8930 3.5358
19 1 -2.0218 -5.2709 3.6854
20 1 -1.3464 -7.1135 2.2611
21 6 2.3234 -1.1126 0.0005
22 1 -0.3634 -0.1218 1.0204
23 1 -0.3634 0.9446 -0.4048
24 1 -0.3634 -0.8229 -0.6156
25 1 4.3997 1.3750 0.0011
26 1 5.6837 -1.1547 0.0037
27 1 5.2814 -3.5380 0.0055
28 1 2.9605 -4.4260 0.0132
29 1 -0.6313 -4.1296 -1.3176
30 1 0.5199 -3.0554 -2.1473
31 1 1.0871 -4.5813 -1.4275
32 1 -2.5989 -4.7662 0.6941
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260587945.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:07:46
Heat of formation + Delta-G solvation = 76.837967 kcal
Electronic energy + Delta-G solvation = -15887.338797 eV
Core-core repulsion = 13427.839970 eV
Total energy + Delta-G solvation = -2459.498827 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 230.111 amu
Computer time = 0.20 seconds
Orbital eigenvalues (eV)
-42.24509 -37.16777 -35.22837 -32.58639 -30.77485 -30.06654 -28.74031 -25.52576
-25.13702 -23.46991 -22.18343 -20.54144 -19.51206 -16.86052 -16.58143 -15.82254
-15.34453 -15.00079 -14.61586 -14.07270 -13.50919 -12.77784 -12.54850 -12.40333
-12.00480 -11.74012 -11.39131 -11.34550 -11.17884 -10.94765 -10.83558 -10.42639
-10.13506 -9.75600 -9.64533 -9.40636 -8.92166 -8.62436 -8.37292 -6.71171
-6.06027 -4.12289 1.46164 1.83377 3.14751 3.26186 3.34863 3.38497
3.52253 4.08977 4.40172 4.87286 4.93221 5.18140 5.26483 5.48155
5.57265 5.66554 5.92017 6.18137 6.29563 6.37142 6.50984 6.64981
6.70645 6.79013 6.96785 7.09431 7.11727 7.18820 7.35324 7.65917
7.73240 7.91024 8.01919 8.31298 8.40040 8.88908 9.51772 10.99702
Molecular weight = 230.11amu
Principal moments of inertia in cm(-1)
A = 0.029865 B = 0.008964 C = 0.007865
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 937.314831 B = 3122.996310 C = 3559.001725
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 C 0.011 3.989
3 N -0.462 5.462
4 C 0.112 3.888
5 N -0.360 5.360
6 C -0.006 4.006
7 C -0.107 4.107
8 C -0.158 4.158
9 C 0.025 3.975
10 C 0.061 3.939
11 H 0.060 0.940
12 C -0.130 4.130
13 C -0.507 4.507
14 H 0.058 0.942
15 C 0.064 3.936
16 N -0.887 5.887
17 Si 0.892 3.108
18 H -0.274 1.274
19 H -0.284 1.284
20 H -0.284 1.284
21 C 0.009 3.991
22 H 0.070 0.930
23 H 0.061 0.939
24 H 0.086 0.914
25 H 0.202 0.798
26 H 0.153 0.847
27 H 0.137 0.863
28 H 0.136 0.864
29 H 0.089 0.911
30 H 0.009 0.991
31 H 0.029 0.971
32 H 0.261 0.739
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.270 3.720 -1.945 10.176
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.125 4.125
2 C -0.125 4.125
3 N -0.178 5.178
4 C -0.161 4.161
5 N -0.030 5.030
6 C -0.125 4.125
7 C -0.128 4.128
8 C -0.179 4.179
9 C 0.023 3.977
10 C 0.043 3.957
11 H 0.078 0.922
12 C -0.188 4.188
13 C -0.545 4.545
14 H 0.076 0.924
15 C -0.138 4.138
16 N -0.526 5.526
17 Si 0.720 3.280
18 H -0.198 1.198
19 H -0.210 1.210
20 H -0.210 1.210
21 C -0.100 4.100
22 H 0.089 0.911
23 H 0.080 0.920
24 H 0.104 0.896
25 H 0.218 0.782
26 H 0.170 0.830
27 H 0.155 0.845
28 H 0.154 0.846
29 H 0.108 0.892
30 H 0.028 0.972
31 H 0.048 0.952
32 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges 8.970 4.608 -1.970 10.275
hybrid contribution 0.519 -1.466 0.849 1.772
sum 9.489 3.142 -1.122 10.058
Atomic orbital electron populations
1.20228 0.86811 1.02401 1.03015 1.20925 0.96303 0.86323 1.08933
1.69814 1.00157 1.30723 1.17071 1.24516 0.96938 0.80256 1.14397
1.42746 1.06947 1.07550 1.45797 1.21253 0.91167 0.89775 1.10310
1.20854 0.98530 0.93454 0.99965 1.20891 0.90559 1.01084 1.05321
1.20201 0.99832 0.87629 0.90039 1.18188 0.85710 0.96880 0.94948
0.92202 1.21792 1.04031 0.98052 0.94946 1.21127 0.96918 1.25071
1.11415 0.92398 1.24921 0.95850 0.96709 0.96302 1.69875 1.02107
1.43487 1.37088 0.86527 0.78197 0.80800 0.82466 1.19822 1.20959
1.20990 1.19649 0.83467 0.95332 1.11559 0.91090 0.91978 0.89562
0.78182 0.82982 0.84525 0.84630 0.89236 0.97206 0.95228 0.92881
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -1.28 9.06 36.00 0.33 -0.96 16
2 C 0.01 0.24 7.21 -82.00 -0.59 -0.36 16
3 N -0.46 -9.08 11.19 -10.18 -0.11 -9.20 16
4 C 0.11 1.89 12.75 -90.04 -1.15 0.74 16
5 N -0.36 -6.46 2.94 -62.43 -0.18 -6.64 16
6 C -0.01 -0.09 10.97 -16.48 -0.18 -0.27 16
7 C -0.11 -1.63 9.97 -39.87 -0.40 -2.03 16
8 C -0.16 -3.03 8.63 -39.45 -0.34 -3.37 16
9 C 0.03 0.54 4.78 -104.43 -0.50 0.04 16
10 C 0.06 1.47 2.37 -92.93 -0.22 1.25 16
11 H 0.06 1.50 4.15 -51.93 -0.22 1.29 16
12 C -0.13 -3.03 8.84 37.16 0.33 -2.70 16
13 C -0.51 -13.28 8.07 -34.44 -0.28 -13.56 16
14 H 0.06 1.53 7.41 -52.49 -0.39 1.14 16
15 C 0.06 1.69 5.31 -17.82 -0.09 1.59 16
16 N -0.89 -24.10 11.33 55.43 0.63 -23.47 16
17 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16
18 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16
19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16
20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16
21 C 0.01 0.19 6.65 -84.09 -0.56 -0.37 16
22 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16
23 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16
24 H 0.09 1.72 6.07 -51.93 -0.32 1.41 16
25 H 0.20 2.40 8.06 -52.49 -0.42 1.98 16
26 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16
27 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16
28 H 0.14 2.59 7.78 -52.49 -0.41 2.18 16
29 H 0.09 2.26 6.08 -51.93 -0.32 1.95 16
30 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16
31 H 0.03 0.65 7.81 -51.93 -0.41 0.24 16
32 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16
LS Contribution 267.13 15.07 4.03 4.03
Total: -1.00 -29.52 267.13 -8.04 -37.56
By element:
Atomic # 1 Polarization: 5.78 SS G_CDS: -3.72 Total: 2.06 kcal
Atomic # 6 Polarization: -16.32 SS G_CDS: -3.65 Total: -19.97 kcal
Atomic # 7 Polarization: -39.64 SS G_CDS: 0.33 Total: -39.31 kcal
Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal
Total LS contribution 4.03 Total: 4.03 kcal
Total: -29.52 -8.04 -37.56 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260587945.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 114.399 kcal
(2) G-P(sol) polarization free energy of solvation -29.522 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.877 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.561 kcal
(6) G-S(sol) free energy of system = (1) + (5) 76.838 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds