Wall clock time and date at job start Mon Mar 30 2020 03:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.33406 * 126.27318 * 2 1 4 4 C 1.30904 * 109.87081 * 179.97438 * 3 2 1 5 5 N 1.35035 * 109.37202 * 359.97438 * 4 3 2 6 6 C 1.37061 * 133.11462 * 180.02562 * 5 4 3 7 7 C 1.34675 * 120.55852 * 179.97438 * 6 5 4 8 8 C 1.40815 * 120.61542 * 359.79490 * 7 6 5 9 9 C 1.35886 * 119.77134 * 0.45942 * 8 7 6 10 10 C 1.50695 * 120.40899 * 179.80163 * 9 8 7 11 11 H 1.09006 * 109.46892 * 173.53133 * 10 9 8 12 12 C 1.53004 * 109.47172 * 293.52657 * 10 9 8 13 13 C 1.50696 * 109.47421 * 53.52987 * 10 9 8 14 14 H 1.08001 * 119.99819 * 359.97438 * 13 10 9 15 15 C 1.37874 * 120.00158 * 179.71782 * 13 10 9 16 16 N 1.31513 * 120.00083 * 0.28435 * 15 13 10 17 17 Si 1.86797 * 120.00163 * 180.27408 * 15 13 10 18 18 H 1.48504 * 109.47211 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46909 * 120.00487 * 17 15 13 20 20 H 1.48496 * 109.47573 * 240.00463 * 17 15 13 21 21 C 1.38003 * 126.27213 * 179.97438 * 2 1 3 22 22 H 1.09000 * 109.47468 * 263.19517 * 1 2 3 23 23 H 1.09005 * 109.47176 * 23.19838 * 1 2 3 24 24 H 1.09005 * 109.47350 * 143.19929 * 1 2 3 25 25 H 1.08000 * 125.31197 * 180.02562 * 4 3 2 26 26 H 1.07997 * 119.72657 * 0.02562 * 6 5 4 27 27 H 1.08001 * 119.69093 * 180.02562 * 7 6 5 28 28 H 1.07998 * 120.11498 * 180.23436 * 8 7 6 29 29 H 1.09004 * 109.46773 * 180.02562 * 12 10 9 30 30 H 1.08996 * 109.47475 * 300.00497 * 12 10 9 31 31 H 1.08999 * 109.46475 * 60.00513 * 12 10 9 32 32 H 0.97000 * 120.00561 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2962 1.0755 0.0000 4 6 3.5520 0.7059 0.0006 5 7 3.6219 -0.6427 0.0015 6 6 4.6697 -1.5263 0.0028 7 6 4.4454 -2.8543 0.0041 8 6 3.1310 -3.3596 0.0084 9 6 2.0780 -2.5008 0.0019 10 6 0.6655 -3.0259 0.0019 11 1 -0.0311 -2.1947 0.1120 12 6 0.3906 -3.7502 -1.3175 13 6 0.4866 -3.9865 1.1491 14 1 1.3133 -4.1962 1.8117 15 6 -0.7338 -4.5937 1.3560 16 7 -1.7404 -4.3388 0.5488 17 14 -0.9577 -5.7786 2.7826 18 1 0.3170 -5.8930 3.5358 19 1 -2.0218 -5.2709 3.6854 20 1 -1.3464 -7.1135 2.2611 21 6 2.3234 -1.1126 0.0005 22 1 -0.3634 -0.1218 1.0204 23 1 -0.3634 0.9446 -0.4048 24 1 -0.3634 -0.8229 -0.6156 25 1 4.3997 1.3750 0.0011 26 1 5.6837 -1.1547 0.0037 27 1 5.2814 -3.5380 0.0055 28 1 2.9605 -4.4260 0.0132 29 1 -0.6313 -4.1296 -1.3176 30 1 0.5199 -3.0554 -2.1473 31 1 1.0871 -4.5813 -1.4275 32 1 -2.5989 -4.7662 0.6941 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260587945.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:46 Heat of formation + Delta-G solvation = 76.837967 kcal Electronic energy + Delta-G solvation = -15887.338797 eV Core-core repulsion = 13427.839970 eV Total energy + Delta-G solvation = -2459.498827 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.24509 -37.16777 -35.22837 -32.58639 -30.77485 -30.06654 -28.74031 -25.52576 -25.13702 -23.46991 -22.18343 -20.54144 -19.51206 -16.86052 -16.58143 -15.82254 -15.34453 -15.00079 -14.61586 -14.07270 -13.50919 -12.77784 -12.54850 -12.40333 -12.00480 -11.74012 -11.39131 -11.34550 -11.17884 -10.94765 -10.83558 -10.42639 -10.13506 -9.75600 -9.64533 -9.40636 -8.92166 -8.62436 -8.37292 -6.71171 -6.06027 -4.12289 1.46164 1.83377 3.14751 3.26186 3.34863 3.38497 3.52253 4.08977 4.40172 4.87286 4.93221 5.18140 5.26483 5.48155 5.57265 5.66554 5.92017 6.18137 6.29563 6.37142 6.50984 6.64981 6.70645 6.79013 6.96785 7.09431 7.11727 7.18820 7.35324 7.65917 7.73240 7.91024 8.01919 8.31298 8.40040 8.88908 9.51772 10.99702 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.029865 B = 0.008964 C = 0.007865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.314831 B = 3122.996310 C = 3559.001725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.011 3.989 3 N -0.462 5.462 4 C 0.112 3.888 5 N -0.360 5.360 6 C -0.006 4.006 7 C -0.107 4.107 8 C -0.158 4.158 9 C 0.025 3.975 10 C 0.061 3.939 11 H 0.060 0.940 12 C -0.130 4.130 13 C -0.507 4.507 14 H 0.058 0.942 15 C 0.064 3.936 16 N -0.887 5.887 17 Si 0.892 3.108 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.009 3.991 22 H 0.070 0.930 23 H 0.061 0.939 24 H 0.086 0.914 25 H 0.202 0.798 26 H 0.153 0.847 27 H 0.137 0.863 28 H 0.136 0.864 29 H 0.089 0.911 30 H 0.009 0.991 31 H 0.029 0.971 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.270 3.720 -1.945 10.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.125 4.125 3 N -0.178 5.178 4 C -0.161 4.161 5 N -0.030 5.030 6 C -0.125 4.125 7 C -0.128 4.128 8 C -0.179 4.179 9 C 0.023 3.977 10 C 0.043 3.957 11 H 0.078 0.922 12 C -0.188 4.188 13 C -0.545 4.545 14 H 0.076 0.924 15 C -0.138 4.138 16 N -0.526 5.526 17 Si 0.720 3.280 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.100 4.100 22 H 0.089 0.911 23 H 0.080 0.920 24 H 0.104 0.896 25 H 0.218 0.782 26 H 0.170 0.830 27 H 0.155 0.845 28 H 0.154 0.846 29 H 0.108 0.892 30 H 0.028 0.972 31 H 0.048 0.952 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.970 4.608 -1.970 10.275 hybrid contribution 0.519 -1.466 0.849 1.772 sum 9.489 3.142 -1.122 10.058 Atomic orbital electron populations 1.20228 0.86811 1.02401 1.03015 1.20925 0.96303 0.86323 1.08933 1.69814 1.00157 1.30723 1.17071 1.24516 0.96938 0.80256 1.14397 1.42746 1.06947 1.07550 1.45797 1.21253 0.91167 0.89775 1.10310 1.20854 0.98530 0.93454 0.99965 1.20891 0.90559 1.01084 1.05321 1.20201 0.99832 0.87629 0.90039 1.18188 0.85710 0.96880 0.94948 0.92202 1.21792 1.04031 0.98052 0.94946 1.21127 0.96918 1.25071 1.11415 0.92398 1.24921 0.95850 0.96709 0.96302 1.69875 1.02107 1.43487 1.37088 0.86527 0.78197 0.80800 0.82466 1.19822 1.20959 1.20990 1.19649 0.83467 0.95332 1.11559 0.91090 0.91978 0.89562 0.78182 0.82982 0.84525 0.84630 0.89236 0.97206 0.95228 0.92881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.28 9.06 36.00 0.33 -0.96 16 2 C 0.01 0.24 7.21 -82.00 -0.59 -0.36 16 3 N -0.46 -9.08 11.19 -10.18 -0.11 -9.20 16 4 C 0.11 1.89 12.75 -90.04 -1.15 0.74 16 5 N -0.36 -6.46 2.94 -62.43 -0.18 -6.64 16 6 C -0.01 -0.09 10.97 -16.48 -0.18 -0.27 16 7 C -0.11 -1.63 9.97 -39.87 -0.40 -2.03 16 8 C -0.16 -3.03 8.63 -39.45 -0.34 -3.37 16 9 C 0.03 0.54 4.78 -104.43 -0.50 0.04 16 10 C 0.06 1.47 2.37 -92.93 -0.22 1.25 16 11 H 0.06 1.50 4.15 -51.93 -0.22 1.29 16 12 C -0.13 -3.03 8.84 37.16 0.33 -2.70 16 13 C -0.51 -13.28 8.07 -34.44 -0.28 -13.56 16 14 H 0.06 1.53 7.41 -52.49 -0.39 1.14 16 15 C 0.06 1.69 5.31 -17.82 -0.09 1.59 16 16 N -0.89 -24.10 11.33 55.43 0.63 -23.47 16 17 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 18 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 C 0.01 0.19 6.65 -84.09 -0.56 -0.37 16 22 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 23 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.09 1.72 6.07 -51.93 -0.32 1.41 16 25 H 0.20 2.40 8.06 -52.49 -0.42 1.98 16 26 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 27 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 28 H 0.14 2.59 7.78 -52.49 -0.41 2.18 16 29 H 0.09 2.26 6.08 -51.93 -0.32 1.95 16 30 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.03 0.65 7.81 -51.93 -0.41 0.24 16 32 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 267.13 15.07 4.03 4.03 Total: -1.00 -29.52 267.13 -8.04 -37.56 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -3.72 Total: 2.06 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: -3.65 Total: -19.97 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.33 Total: -39.31 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -29.52 -8.04 -37.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260587945.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.399 kcal (2) G-P(sol) polarization free energy of solvation -29.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds