Wall clock time and date at job start Mon Mar 30 2020 03:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.33406 * 126.27318 * 2 1 4 4 C 1.30904 * 109.87081 * 179.97438 * 3 2 1 5 5 N 1.35035 * 109.37202 * 359.97438 * 4 3 2 6 6 C 1.37061 * 133.11462 * 180.02562 * 5 4 3 7 7 C 1.34675 * 120.55852 * 179.97438 * 6 5 4 8 8 C 1.40815 * 120.61542 * 359.79490 * 7 6 5 9 9 C 1.35886 * 119.77134 * 0.45942 * 8 7 6 10 10 C 1.50695 * 120.40899 * 179.80163 * 9 8 7 11 11 H 1.09006 * 109.46892 * 173.53133 * 10 9 8 12 12 C 1.53004 * 109.47172 * 293.52657 * 10 9 8 13 13 C 1.50696 * 109.47421 * 53.52987 * 10 9 8 14 14 H 1.08001 * 119.99819 * 359.97438 * 13 10 9 15 15 C 1.37874 * 120.00158 * 179.71782 * 13 10 9 16 16 N 1.31513 * 120.00083 * 0.28435 * 15 13 10 17 17 Si 1.86797 * 120.00163 * 180.27408 * 15 13 10 18 18 H 1.48504 * 109.47211 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46909 * 120.00487 * 17 15 13 20 20 H 1.48496 * 109.47573 * 240.00463 * 17 15 13 21 21 C 1.38003 * 126.27213 * 179.97438 * 2 1 3 22 22 H 1.09000 * 109.47468 * 263.19517 * 1 2 3 23 23 H 1.09005 * 109.47176 * 23.19838 * 1 2 3 24 24 H 1.09005 * 109.47350 * 143.19929 * 1 2 3 25 25 H 1.08000 * 125.31197 * 180.02562 * 4 3 2 26 26 H 1.07997 * 119.72657 * 0.02562 * 6 5 4 27 27 H 1.08001 * 119.69093 * 180.02562 * 7 6 5 28 28 H 1.07998 * 120.11498 * 180.23436 * 8 7 6 29 29 H 1.09004 * 109.46773 * 180.02562 * 12 10 9 30 30 H 1.08996 * 109.47475 * 300.00497 * 12 10 9 31 31 H 1.08999 * 109.46475 * 60.00513 * 12 10 9 32 32 H 0.97000 * 120.00561 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2962 1.0755 0.0000 4 6 3.5520 0.7059 0.0006 5 7 3.6219 -0.6427 0.0015 6 6 4.6697 -1.5263 0.0028 7 6 4.4454 -2.8543 0.0041 8 6 3.1310 -3.3596 0.0084 9 6 2.0780 -2.5008 0.0019 10 6 0.6655 -3.0259 0.0019 11 1 -0.0311 -2.1947 0.1120 12 6 0.3906 -3.7502 -1.3175 13 6 0.4866 -3.9865 1.1491 14 1 1.3133 -4.1962 1.8117 15 6 -0.7338 -4.5937 1.3560 16 7 -1.7404 -4.3388 0.5488 17 14 -0.9577 -5.7786 2.7826 18 1 0.3170 -5.8930 3.5358 19 1 -2.0218 -5.2709 3.6854 20 1 -1.3464 -7.1135 2.2611 21 6 2.3234 -1.1126 0.0005 22 1 -0.3634 -0.1218 1.0204 23 1 -0.3634 0.9446 -0.4048 24 1 -0.3634 -0.8229 -0.6156 25 1 4.3997 1.3750 0.0011 26 1 5.6837 -1.1547 0.0037 27 1 5.2814 -3.5380 0.0055 28 1 2.9605 -4.4260 0.0132 29 1 -0.6313 -4.1296 -1.3176 30 1 0.5199 -3.0554 -2.1473 31 1 1.0871 -4.5813 -1.4275 32 1 -2.5989 -4.7662 0.6941 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260587945.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:46 Heat of formation + Delta-G solvation = 62.004716 kcal Electronic energy + Delta-G solvation = -15887.982015 eV Core-core repulsion = 13427.839970 eV Total energy + Delta-G solvation = -2460.142045 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.62144 -38.60973 -36.83967 -34.36177 -32.30298 -31.57524 -30.31505 -27.23737 -26.88112 -24.97649 -23.53322 -22.17915 -20.99800 -18.39974 -18.22908 -17.33256 -16.76868 -16.71931 -16.07695 -15.50280 -15.03044 -14.54969 -14.06389 -13.90425 -13.66153 -13.26228 -13.08954 -12.92037 -12.88091 -12.74677 -12.41115 -12.19339 -12.03717 -11.38670 -11.23256 -11.02302 -10.71926 -10.36735 -10.05434 -8.16729 -8.02226 -6.19411 0.11038 0.46261 1.40986 1.43979 1.53826 1.86498 2.14021 2.43565 2.69071 3.21198 3.65094 3.72557 3.98393 4.12673 4.16838 4.36861 4.53595 4.75459 4.80205 4.87978 4.97523 4.99524 5.13854 5.19102 5.26627 5.36361 5.53051 5.66433 5.69231 5.83361 6.07481 6.10061 6.35673 6.48922 6.87285 6.99149 7.46857 8.97574 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.029865 B = 0.008964 C = 0.007865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.314831 B = 3122.996310 C = 3559.001725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C -0.023 4.023 3 N -0.487 5.487 4 C 0.134 3.866 5 N -0.369 5.369 6 C 0.017 3.983 7 C -0.120 4.120 8 C -0.149 4.149 9 C -0.022 4.022 10 C 0.061 3.939 11 H 0.041 0.959 12 C -0.118 4.118 13 C -0.517 4.517 14 H 0.050 0.950 15 C 0.018 3.982 16 N -0.912 5.912 17 Si 0.950 3.050 18 H -0.270 1.270 19 H -0.284 1.284 20 H -0.278 1.278 21 C -0.013 4.013 22 H 0.058 0.942 23 H 0.077 0.923 24 H 0.068 0.932 25 H 0.254 0.746 26 H 0.211 0.789 27 H 0.182 0.818 28 H 0.127 0.873 29 H 0.064 0.936 30 H 0.018 0.982 31 H 0.032 0.968 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.469 4.136 -1.618 13.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.158 4.158 3 N -0.203 5.203 4 C -0.141 4.141 5 N -0.040 5.040 6 C -0.101 4.101 7 C -0.140 4.140 8 C -0.170 4.170 9 C -0.024 4.024 10 C 0.042 3.958 11 H 0.058 0.942 12 C -0.176 4.176 13 C -0.555 4.555 14 H 0.068 0.932 15 C -0.181 4.181 16 N -0.552 5.552 17 Si 0.776 3.224 18 H -0.195 1.195 19 H -0.210 1.210 20 H -0.204 1.204 21 C -0.122 4.122 22 H 0.077 0.923 23 H 0.096 0.904 24 H 0.086 0.914 25 H 0.270 0.730 26 H 0.227 0.773 27 H 0.199 0.801 28 H 0.145 0.855 29 H 0.083 0.917 30 H 0.037 0.963 31 H 0.051 0.949 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 12.159 5.015 -1.646 13.255 hybrid contribution -0.326 -1.536 0.726 1.730 sum 11.834 3.480 -0.919 12.369 Atomic orbital electron populations 1.20073 0.87147 1.02413 1.01944 1.21058 0.96727 0.87132 1.10848 1.69778 1.01532 1.30724 1.18234 1.25565 0.97376 0.80378 1.10761 1.43022 1.06534 1.08302 1.46094 1.22249 0.92535 0.89294 1.06033 1.21251 0.97746 0.94745 1.00296 1.21082 0.92205 1.00443 1.03247 1.19891 0.98915 0.88739 0.94825 1.17995 0.87731 0.95792 0.94262 0.94166 1.21615 1.02381 0.98175 0.95439 1.21374 0.96696 1.25449 1.12002 0.93212 1.25622 0.95724 0.98273 0.98495 1.69994 1.02380 1.44412 1.38403 0.85621 0.77984 0.79008 0.79741 1.19456 1.20959 1.20419 1.19604 0.85256 0.95014 1.12366 0.92301 0.90398 0.91352 0.73020 0.77271 0.80067 0.85531 0.91740 0.96333 0.94929 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.35 9.06 71.23 0.65 -1.71 16 2 C -0.02 -0.98 7.21 42.26 0.30 -0.67 16 3 N -0.49 -18.47 11.19 -186.13 -2.08 -20.55 16 4 C 0.13 4.00 12.75 180.15 2.30 6.30 16 5 N -0.37 -12.04 2.94 -351.44 -1.03 -13.07 16 6 C 0.02 0.41 10.97 83.06 0.91 1.33 16 7 C -0.12 -3.18 9.97 22.08 0.22 -2.96 16 8 C -0.15 -5.55 8.63 22.35 0.19 -5.36 16 9 C -0.02 -0.95 4.78 -19.74 -0.09 -1.05 16 10 C 0.06 3.05 2.37 -12.29 -0.03 3.02 16 11 H 0.04 2.16 4.15 -2.38 -0.01 2.15 16 12 C -0.12 -5.72 8.84 71.98 0.64 -5.09 16 13 C -0.52 -27.91 8.07 25.60 0.21 -27.71 16 14 H 0.05 2.69 7.41 -2.91 -0.02 2.67 16 15 C 0.02 0.96 5.31 84.65 0.45 1.41 16 16 N -0.91 -51.32 11.33 21.45 0.24 -51.07 16 17 Si 0.95 43.07 29.54 68.60 2.03 45.09 16 18 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 19 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 20 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 21 C -0.01 -0.53 6.65 38.77 0.26 -0.28 16 22 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 23 H 0.08 2.76 8.14 -2.38 -0.02 2.74 16 24 H 0.07 2.95 6.07 -2.38 -0.01 2.94 16 25 H 0.25 4.50 8.06 -2.91 -0.02 4.47 16 26 H 0.21 2.69 8.06 -2.91 -0.02 2.66 16 27 H 0.18 3.12 8.06 -2.91 -0.02 3.10 16 28 H 0.13 4.81 7.78 -2.91 -0.02 4.79 16 29 H 0.06 3.41 6.08 -2.38 -0.01 3.40 16 30 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.03 1.48 7.81 -2.39 -0.02 1.46 16 32 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -66.73 267.13 6.27 -60.46 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: 1.12 Total: 11.90 kcal Atomic # 6 Polarization: -38.75 SS G_CDS: 6.00 Total: -32.75 kcal Atomic # 7 Polarization: -81.82 SS G_CDS: -2.88 Total: -84.70 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal Total: -66.73 6.27 -60.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260587945.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.468 kcal (2) G-P(sol) polarization free energy of solvation -66.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds