Wall clock time and date at job start Mon Mar 30 2020 02:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35906 * 117.00220 * 2 1 4 4 C 1.38887 * 120.05647 * 0.02562 * 3 2 1 5 5 C 1.38209 * 120.30788 * 179.97438 * 4 3 2 6 6 C 1.38195 * 120.17278 * 0.06731 * 5 4 3 7 7 C 1.39051 * 119.78180 * 359.90932 * 6 5 4 8 8 C 1.38411 * 120.06379 * 180.02562 * 3 2 1 9 9 C 1.50423 * 120.59741 * 359.88336 * 8 3 2 10 10 C 1.52671 * 110.22595 * 144.85762 * 9 8 3 11 11 C 1.50410 * 110.65355 * 51.16761 * 10 9 8 12 12 C 1.36298 * 120.44565 * 323.96047 * 11 10 9 13 13 C 1.40940 * 120.52048 * 180.65308 * 12 11 10 14 14 H 1.08000 * 119.99528 * 205.25022 * 13 12 11 15 15 C 1.40021 * 120.00041 * 25.25106 * 13 12 11 16 16 N 1.30791 * 120.00316 * 17.58129 * 15 13 12 17 17 Si 1.86800 * 119.99867 * 197.58278 * 15 13 12 18 18 H 1.48497 * 109.47431 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47111 * 120.00293 * 17 15 13 20 20 H 1.48504 * 109.47221 * 239.99834 * 17 15 13 21 21 H 1.08998 * 109.47278 * 299.99857 * 1 2 3 22 22 H 1.09002 * 109.47406 * 60.00017 * 1 2 3 23 23 H 1.09001 * 109.46980 * 179.97438 * 1 2 3 24 24 H 1.07997 * 119.84581 * 359.96273 * 4 3 2 25 25 H 1.07993 * 119.91425 * 180.02562 * 5 4 3 26 26 H 1.07997 * 120.10392 * 179.97438 * 6 5 4 27 27 H 1.08995 * 109.30411 * 24.64513 * 9 8 3 28 28 H 1.08995 * 109.35608 * 265.10447 * 9 8 3 29 29 H 1.09005 * 109.23544 * 290.88037 * 10 9 8 30 30 H 1.08998 * 109.23716 * 171.45687 * 10 9 8 31 31 H 1.08001 * 119.77760 * 143.97912 * 11 10 9 32 32 H 0.97001 * 120.00129 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2907 2.3765 0.0005 5 6 1.9128 3.6107 0.0011 6 6 3.2923 3.6932 -0.0003 7 6 4.0538 2.5297 -0.0004 8 6 3.4281 1.2848 -0.0005 9 6 4.2618 0.0328 0.0015 10 6 5.5292 0.2412 -0.8238 11 6 6.2438 1.4923 -0.3920 12 6 5.5380 2.5919 -0.0041 13 6 6.2058 3.7695 0.3878 14 1 5.7230 4.4671 1.0562 15 6 7.4951 4.0351 -0.0894 16 7 7.9472 3.4005 -1.1399 17 14 8.5694 5.2957 0.7743 18 1 7.8303 5.8691 1.9276 19 1 9.8109 4.6397 1.2581 20 1 8.9213 6.3809 -0.1764 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 0.2124 2.3182 0.0003 25 1 1.3194 4.5129 0.0019 26 1 3.7773 4.6581 -0.0003 27 1 3.6832 -0.7861 -0.4258 28 1 4.5354 -0.2174 1.0265 29 1 5.2619 0.3259 -1.8772 30 1 6.1905 -0.6147 -0.6889 31 1 7.3234 1.5196 -0.3895 32 1 8.8403 3.5848 -1.4707 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260602547.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:16 Heat of formation + Delta-G solvation = -14.152505 kcal Electronic energy + Delta-G solvation = -15618.552121 eV Core-core repulsion = 13122.814900 eV Total energy + Delta-G solvation = -2495.737221 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.73988 -37.42294 -34.86358 -33.38540 -30.68594 -29.28305 -27.93710 -26.84884 -25.09909 -22.33828 -21.40289 -20.65431 -17.87711 -17.40655 -15.69830 -15.54532 -15.37223 -14.90641 -14.80860 -13.74976 -13.59531 -12.95265 -12.70554 -12.26464 -12.01014 -11.61552 -11.49775 -11.22541 -11.06767 -10.98162 -10.72371 -10.67123 -10.38422 -10.20863 -9.28360 -9.21823 -9.03666 -8.40844 -7.48004 -6.73437 -6.46552 -4.08863 1.93631 2.17497 3.08197 3.21094 3.26054 3.69738 3.93002 4.14659 4.66584 5.19942 5.30701 5.38875 5.45869 5.50642 5.58856 5.92712 5.98866 6.07994 6.26555 6.30548 6.43600 6.61856 6.81202 6.86190 7.00784 7.11509 7.21391 7.27880 7.45226 7.48782 7.57903 7.96665 8.19981 8.43501 8.94062 9.16104 9.29623 10.52525 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.039496 B = 0.007746 C = 0.006711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.759293 B = 3613.837525 C = 4171.034734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.319 6.319 3 C 0.114 3.886 4 C -0.232 4.232 5 C -0.096 4.096 6 C -0.142 4.142 7 C 0.024 3.976 8 C -0.117 4.117 9 C -0.063 4.063 10 C -0.057 4.057 11 C -0.290 4.290 12 C 0.056 3.944 13 C -0.461 4.461 14 H 0.068 0.932 15 C 0.074 3.926 16 N -0.805 5.805 17 Si 0.897 3.103 18 H -0.264 1.264 19 H -0.276 1.276 20 H -0.279 1.279 21 H 0.049 0.951 22 H 0.049 0.951 23 H 0.091 0.909 24 H 0.114 0.886 25 H 0.113 0.887 26 H 0.127 0.873 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.038 0.962 30 H 0.045 0.955 31 H 0.115 0.885 32 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.690 -2.880 1.545 10.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.233 6.233 3 C 0.070 3.930 4 C -0.251 4.251 5 C -0.114 4.114 6 C -0.161 4.161 7 C 0.024 3.976 8 C -0.118 4.118 9 C -0.100 4.100 10 C -0.094 4.094 11 C -0.312 4.312 12 C 0.055 3.945 13 C -0.492 4.492 14 H 0.086 0.914 15 C -0.140 4.140 16 N -0.432 5.432 17 Si 0.723 3.277 18 H -0.188 1.188 19 H -0.201 1.201 20 H -0.205 1.205 21 H 0.068 0.932 22 H 0.068 0.932 23 H 0.110 0.890 24 H 0.132 0.868 25 H 0.131 0.869 26 H 0.145 0.855 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.132 0.868 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.426 -3.077 1.392 10.013 hybrid contribution 0.192 0.874 0.246 0.928 sum -9.234 -2.203 1.637 9.633 Atomic orbital electron populations 1.22908 0.79706 1.02935 1.00875 1.86032 1.20235 1.27606 1.89455 1.18697 0.91677 0.83579 0.99029 1.20930 0.98744 0.92562 1.12859 1.20784 0.94794 0.96173 0.99697 1.21186 0.92620 0.99014 1.03245 1.19479 0.96062 0.90366 0.91668 1.19343 0.89648 0.96336 1.06428 1.20145 0.95772 0.93612 1.00512 1.20009 0.94135 0.97800 0.97449 1.22896 0.98779 0.92078 1.17427 1.17479 0.85945 0.93908 0.97214 1.19132 0.99126 1.05012 1.25945 0.91374 1.25653 0.98290 0.96464 0.93628 1.69845 1.17095 1.38199 1.18087 0.86450 0.80284 0.80642 0.80347 1.18793 1.20125 1.20472 0.93202 0.93219 0.89008 0.86785 0.86890 0.85533 0.92203 0.91915 0.94345 0.93596 0.86770 0.91742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.81 101.05 0.99 1.36 16 2 O -0.32 -5.51 9.49 -19.45 -0.18 -5.70 16 3 C 0.11 2.24 6.66 -39.28 -0.26 1.97 16 4 C -0.23 -4.10 9.04 -39.35 -0.36 -4.45 16 5 C -0.10 -1.76 10.03 -39.61 -0.40 -2.16 16 6 C -0.14 -3.08 9.41 -39.30 -0.37 -3.45 16 7 C 0.02 0.59 5.75 -104.94 -0.60 -0.01 16 8 C -0.12 -2.60 5.67 -104.29 -0.59 -3.19 16 9 C -0.06 -1.33 5.74 -28.19 -0.16 -1.49 16 10 C -0.06 -1.29 6.06 -28.19 -0.17 -1.46 16 11 C -0.29 -7.67 8.80 -35.15 -0.31 -7.98 16 12 C 0.06 1.50 5.57 -105.32 -0.59 0.92 16 13 C -0.46 -12.53 8.25 -37.89 -0.31 -12.84 16 14 H 0.07 1.79 7.46 -52.49 -0.39 1.40 16 15 C 0.07 1.94 5.12 -17.33 -0.09 1.85 16 16 N -0.80 -21.93 11.02 55.55 0.61 -21.32 16 17 Si 0.90 19.67 29.59 -169.99 -5.03 14.64 16 18 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 19 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 20 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 21 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 22 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 23 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 24 H 0.11 1.63 6.29 -52.49 -0.33 1.30 16 25 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 26 H 0.13 2.71 7.18 -52.49 -0.38 2.34 16 27 H 0.06 1.15 7.40 -51.93 -0.38 0.77 16 28 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.11 3.24 6.13 -52.49 -0.32 2.92 16 32 H 0.27 6.81 8.30 -40.82 -0.34 6.47 16 LS Contribution 266.03 15.07 4.01 4.01 Total: -1.00 -29.13 266.03 -7.66 -36.79 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -3.85 Total: 2.50 kcal Atomic # 6 Polarization: -27.70 SS G_CDS: -3.22 Total: -30.91 kcal Atomic # 7 Polarization: -21.93 SS G_CDS: 0.61 Total: -21.32 kcal Atomic # 8 Polarization: -5.51 SS G_CDS: -0.18 Total: -5.70 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.03 Total: 14.64 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.13 -7.66 -36.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260602547.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.637 kcal (2) G-P(sol) polarization free energy of solvation -29.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds