Wall clock time and date at job start Mon Mar 30 2020 02:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35862 * 116.99565 * 2 1 4 4 C 1.38869 * 119.88124 * 0.26636 * 3 2 1 5 5 C 1.37972 * 120.05638 * 180.35796 * 4 3 2 6 6 C 1.39132 * 119.74533 * 359.70867 * 5 4 3 7 7 C 1.39440 * 120.16019 * 359.90309 * 6 5 4 8 8 C 1.37841 * 119.83418 * 0.15523 * 7 6 5 9 9 C 1.50531 * 119.64692 * 180.27538 * 7 6 5 10 10 C 1.52661 * 110.16424 * 324.61561 * 9 7 6 11 11 C 1.50400 * 110.68745 * 51.20170 * 10 9 7 12 12 C 1.36336 * 120.46208 * 323.98513 * 11 10 9 13 13 C 1.40951 * 120.51147 * 180.63636 * 12 11 10 14 14 H 1.07996 * 119.99584 * 205.25067 * 13 12 11 15 15 C 1.39990 * 119.99867 * 25.25648 * 13 12 11 16 16 N 1.30808 * 120.00267 * 17.59019 * 15 13 12 17 17 Si 1.86799 * 119.99855 * 197.59722 * 15 13 12 18 18 H 1.48504 * 109.47031 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47282 * 119.99442 * 17 15 13 20 20 H 1.48502 * 109.47409 * 239.99760 * 17 15 13 21 21 H 1.08995 * 109.47647 * 60.00008 * 1 2 3 22 22 H 1.09004 * 109.47089 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.47152 * 299.99522 * 1 2 3 24 24 H 1.08005 * 119.97098 * 0.04932 * 4 3 2 25 25 H 1.07996 * 120.13178 * 179.69401 * 5 4 3 26 26 H 1.08005 * 120.01898 * 179.90001 * 8 7 6 27 27 H 1.09006 * 109.35175 * 84.82545 * 9 7 6 28 28 H 1.09003 * 109.35714 * 204.39343 * 9 7 6 29 29 H 1.09004 * 109.23265 * 290.88911 * 10 9 7 30 30 H 1.09001 * 109.20437 * 171.49881 * 10 9 7 31 31 H 1.08001 * 119.77526 * 143.95431 * 11 10 9 32 32 H 0.96997 * 119.99970 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2106 0.0000 4 6 1.2869 2.3736 0.0056 5 6 1.9094 3.6049 -0.0018 6 6 3.2988 3.6759 -0.0088 7 6 4.0601 2.5076 -0.0063 8 6 3.4326 1.2803 0.0000 9 6 5.5627 2.5980 -0.0076 10 6 6.0172 3.7936 -0.8409 11 6 5.2969 5.0431 -0.4145 12 6 3.9924 4.9890 -0.0219 13 6 3.3124 6.1614 0.3652 14 1 2.4689 6.0996 1.0368 15 6 3.7304 7.4059 -0.1209 16 7 4.5027 7.4706 -1.1747 17 14 3.1855 8.9740 0.7353 18 1 2.3220 8.6310 1.8938 19 1 4.3790 9.7191 1.2105 20 1 2.4217 9.8187 -0.2177 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8901 24 1 0.2085 2.3142 0.0107 25 1 1.3204 4.5101 -0.0025 26 1 4.0193 0.3735 0.0003 27 1 5.9184 2.7150 1.0161 28 1 5.9792 1.6836 -0.4302 29 1 5.8069 3.5990 -1.8926 30 1 7.0900 3.9349 -0.7097 31 1 5.8167 5.9898 -0.4188 32 1 4.7926 8.3329 -1.5113 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260623759.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:48 Heat of formation + Delta-G solvation = -15.355082 kcal Electronic energy + Delta-G solvation = -15461.587564 eV Core-core repulsion = 12965.798196 eV Total energy + Delta-G solvation = -2495.789368 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.66128 -37.75860 -34.55064 -33.34229 -31.14870 -28.89942 -28.43429 -26.53492 -25.08277 -22.56622 -21.23811 -20.74184 -18.00700 -17.08626 -16.25008 -15.59989 -15.41087 -15.04378 -14.17860 -13.90176 -13.34390 -13.23594 -12.56339 -12.42992 -12.03365 -11.85881 -11.61504 -11.35864 -11.12724 -10.89622 -10.83386 -10.64994 -10.30188 -10.11485 -9.37047 -9.18104 -8.99839 -8.12271 -8.08035 -6.53958 -6.46739 -4.09253 1.98711 2.08459 3.07139 3.20056 3.24826 3.65078 3.91937 4.13476 4.65225 5.19652 5.30110 5.38964 5.47647 5.56206 5.58303 5.82327 5.86202 6.08553 6.20074 6.20511 6.37546 6.54827 6.76749 6.81644 6.96929 7.04920 7.22394 7.26237 7.40471 7.49876 7.53465 7.93414 8.19812 8.45179 8.95071 9.16951 9.31845 10.52097 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.030910 B = 0.007825 C = 0.006460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.647336 B = 3577.318980 C = 4333.079327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.326 6.326 3 C 0.095 3.905 4 C -0.215 4.215 5 C -0.073 4.073 6 C -0.043 4.043 7 C -0.051 4.051 8 C -0.154 4.154 9 C -0.073 4.073 10 C -0.054 4.054 11 C -0.302 4.302 12 C 0.064 3.936 13 C -0.463 4.463 14 H 0.067 0.933 15 C 0.074 3.926 16 N -0.804 5.804 17 Si 0.896 3.104 18 H -0.264 1.264 19 H -0.276 1.276 20 H -0.279 1.279 21 H 0.051 0.949 22 H 0.091 0.909 23 H 0.051 0.949 24 H 0.117 0.883 25 H 0.128 0.872 26 H 0.119 0.881 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.038 0.962 30 H 0.045 0.955 31 H 0.113 0.887 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.170 -8.375 1.623 9.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.241 6.241 3 C 0.051 3.949 4 C -0.234 4.234 5 C -0.091 4.091 6 C -0.043 4.043 7 C -0.051 4.051 8 C -0.173 4.173 9 C -0.110 4.110 10 C -0.092 4.092 11 C -0.324 4.324 12 C 0.063 3.937 13 C -0.494 4.494 14 H 0.085 0.915 15 C -0.140 4.140 16 N -0.431 5.431 17 Si 0.721 3.279 18 H -0.188 1.188 19 H -0.201 1.201 20 H -0.205 1.205 21 H 0.069 0.931 22 H 0.110 0.890 23 H 0.069 0.931 24 H 0.135 0.865 25 H 0.146 0.854 26 H 0.137 0.863 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.131 0.869 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.993 -8.410 1.467 9.425 hybrid contribution -0.638 0.969 0.252 1.187 sum -4.632 -7.441 1.719 8.932 Atomic orbital electron populations 1.22912 0.79449 1.02903 1.01134 1.85974 1.20550 1.27813 1.89724 1.18884 0.92121 0.83546 1.00322 1.21089 0.99028 0.92608 1.10664 1.21049 0.94528 0.96394 0.97123 1.19563 0.92544 0.94705 0.97525 1.19823 0.96015 0.91539 0.97714 1.20045 0.90950 0.97622 1.08678 1.20387 0.90794 0.98850 1.00970 1.19964 0.98007 0.93884 0.97295 1.22805 0.94836 0.96060 1.18738 1.17457 0.91710 0.88160 0.96394 1.19140 1.14070 0.90435 1.25791 0.91516 1.25647 0.94466 1.00247 0.93610 1.69859 1.29206 1.26257 1.17825 0.86476 0.79101 0.81958 0.80340 1.18828 1.20109 1.20483 0.93052 0.89040 0.93074 0.86540 0.85411 0.86309 0.91278 0.92452 0.94363 0.93592 0.86891 0.91782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.81 101.05 0.99 1.36 16 2 O -0.33 -5.34 10.49 -19.31 -0.20 -5.54 16 3 C 0.10 1.77 6.69 -39.12 -0.26 1.51 16 4 C -0.22 -3.99 9.02 -39.45 -0.36 -4.35 16 5 C -0.07 -1.57 9.40 -39.35 -0.37 -1.94 16 6 C -0.04 -1.02 5.76 -104.88 -0.60 -1.63 16 7 C -0.05 -1.08 5.66 -104.40 -0.59 -1.67 16 8 C -0.15 -2.97 9.63 -39.50 -0.38 -3.35 16 9 C -0.07 -1.43 5.91 -28.14 -0.17 -1.59 16 10 C -0.05 -1.19 6.06 -28.20 -0.17 -1.36 16 11 C -0.30 -7.90 8.80 -35.14 -0.31 -8.21 16 12 C 0.06 1.71 5.57 -105.32 -0.59 1.12 16 13 C -0.46 -12.53 8.24 -37.90 -0.31 -12.85 16 14 H 0.07 1.75 7.45 -52.49 -0.39 1.36 16 15 C 0.07 1.96 5.11 -17.33 -0.09 1.87 16 16 N -0.80 -21.86 11.02 55.55 0.61 -21.25 16 17 Si 0.90 19.62 29.59 -169.99 -5.03 14.59 16 18 H -0.26 -5.73 7.11 56.52 0.40 -5.32 16 19 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 20 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 21 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 22 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.05 0.56 7.64 -51.92 -0.40 0.16 16 24 H 0.12 1.80 6.27 -52.48 -0.33 1.47 16 25 H 0.13 2.71 7.18 -52.49 -0.38 2.34 16 26 H 0.12 2.02 8.06 -52.48 -0.42 1.59 16 27 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.06 0.96 8.05 -51.93 -0.42 0.54 16 29 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.11 3.19 6.13 -52.49 -0.32 2.87 16 32 H 0.27 6.79 8.30 -40.82 -0.34 6.45 16 LS Contribution 267.39 15.07 4.03 4.03 Total: -1.00 -28.98 267.39 -7.68 -36.66 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -3.88 Total: 2.61 kcal Atomic # 6 Polarization: -27.89 SS G_CDS: -3.21 Total: -31.09 kcal Atomic # 7 Polarization: -21.86 SS G_CDS: 0.61 Total: -21.25 kcal Atomic # 8 Polarization: -5.34 SS G_CDS: -0.20 Total: -5.54 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.03 Total: 14.59 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -28.98 -7.68 -36.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260623759.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.303 kcal (2) G-P(sol) polarization free energy of solvation -28.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds