Wall clock time and date at job start Mon Mar 30 2020 02:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35862 * 116.99565 * 2 1 4 4 C 1.38869 * 119.88124 * 0.26636 * 3 2 1 5 5 C 1.37972 * 120.05638 * 180.35796 * 4 3 2 6 6 C 1.39132 * 119.74533 * 359.70867 * 5 4 3 7 7 C 1.39440 * 120.16019 * 359.90309 * 6 5 4 8 8 C 1.37841 * 119.83418 * 0.15523 * 7 6 5 9 9 C 1.50531 * 119.64692 * 180.27538 * 7 6 5 10 10 C 1.52661 * 110.16424 * 324.61561 * 9 7 6 11 11 C 1.50400 * 110.68745 * 51.20170 * 10 9 7 12 12 C 1.36336 * 120.46208 * 323.98513 * 11 10 9 13 13 C 1.40951 * 120.51147 * 180.63636 * 12 11 10 14 14 H 1.07996 * 119.99584 * 205.25067 * 13 12 11 15 15 C 1.39990 * 119.99867 * 25.25648 * 13 12 11 16 16 N 1.30808 * 120.00267 * 17.59019 * 15 13 12 17 17 Si 1.86799 * 119.99855 * 197.59722 * 15 13 12 18 18 H 1.48504 * 109.47031 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47282 * 119.99442 * 17 15 13 20 20 H 1.48502 * 109.47409 * 239.99760 * 17 15 13 21 21 H 1.08995 * 109.47647 * 60.00008 * 1 2 3 22 22 H 1.09004 * 109.47089 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.47152 * 299.99522 * 1 2 3 24 24 H 1.08005 * 119.97098 * 0.04932 * 4 3 2 25 25 H 1.07996 * 120.13178 * 179.69401 * 5 4 3 26 26 H 1.08005 * 120.01898 * 179.90001 * 8 7 6 27 27 H 1.09006 * 109.35175 * 84.82545 * 9 7 6 28 28 H 1.09003 * 109.35714 * 204.39343 * 9 7 6 29 29 H 1.09004 * 109.23265 * 290.88911 * 10 9 7 30 30 H 1.09001 * 109.20437 * 171.49881 * 10 9 7 31 31 H 1.08001 * 119.77526 * 143.95431 * 11 10 9 32 32 H 0.96997 * 119.99970 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2106 0.0000 4 6 1.2869 2.3736 0.0056 5 6 1.9094 3.6049 -0.0018 6 6 3.2988 3.6759 -0.0088 7 6 4.0601 2.5076 -0.0063 8 6 3.4326 1.2803 0.0000 9 6 5.5627 2.5980 -0.0076 10 6 6.0172 3.7936 -0.8409 11 6 5.2969 5.0431 -0.4145 12 6 3.9924 4.9890 -0.0219 13 6 3.3124 6.1614 0.3652 14 1 2.4689 6.0996 1.0368 15 6 3.7304 7.4059 -0.1209 16 7 4.5027 7.4706 -1.1747 17 14 3.1855 8.9740 0.7353 18 1 2.3220 8.6310 1.8938 19 1 4.3790 9.7191 1.2105 20 1 2.4217 9.8187 -0.2177 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8901 24 1 0.2085 2.3142 0.0107 25 1 1.3204 4.5101 -0.0025 26 1 4.0193 0.3735 0.0003 27 1 5.9184 2.7150 1.0161 28 1 5.9792 1.6836 -0.4302 29 1 5.8069 3.5990 -1.8926 30 1 7.0900 3.9349 -0.7097 31 1 5.8167 5.9898 -0.4188 32 1 4.7926 8.3329 -1.5113 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260623759.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:48 Heat of formation + Delta-G solvation = -31.056973 kcal Electronic energy + Delta-G solvation = -15462.268449 eV Core-core repulsion = 12965.798196 eV Total energy + Delta-G solvation = -2496.470254 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.105 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.11640 -39.23249 -36.31151 -35.08631 -32.88158 -30.54856 -29.93169 -27.81611 -26.90748 -24.19210 -22.85332 -22.41959 -19.75366 -18.49765 -18.05687 -17.08199 -16.87396 -16.56227 -15.77579 -15.52706 -14.98956 -14.66883 -14.20408 -14.05058 -13.53678 -13.28584 -13.18591 -13.04744 -12.81344 -12.62071 -12.38078 -12.15539 -11.87374 -11.72998 -11.16465 -11.01331 -10.90391 -9.83197 -9.64378 -8.45319 -8.31522 -6.15749 0.38970 0.50967 1.31810 1.38748 1.52177 2.10356 2.28453 2.44472 2.90264 3.55374 3.94688 3.99580 4.26736 4.32795 4.44040 4.45092 4.52697 4.58680 4.65724 4.75752 4.81898 4.99221 5.11101 5.22687 5.30408 5.37403 5.43203 5.54533 5.63797 5.85850 5.88946 6.16656 6.40577 6.57226 6.93970 7.16351 7.35807 8.55480 Molecular weight = 230.10amu Principal moments of inertia in cm(-1) A = 0.030910 B = 0.007825 C = 0.006460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.647336 B = 3577.318980 C = 4333.079327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.331 6.331 3 C 0.107 3.893 4 C -0.210 4.210 5 C -0.084 4.084 6 C -0.087 4.087 7 C -0.059 4.059 8 C -0.157 4.157 9 C -0.068 4.068 10 C -0.050 4.050 11 C -0.327 4.327 12 C 0.045 3.955 13 C -0.495 4.495 14 H 0.063 0.937 15 C 0.030 3.970 16 N -0.838 5.838 17 Si 0.970 3.030 18 H -0.260 1.260 19 H -0.270 1.270 20 H -0.269 1.269 21 H 0.059 0.941 22 H 0.124 0.876 23 H 0.060 0.940 24 H 0.149 0.851 25 H 0.118 0.882 26 H 0.146 0.854 27 H 0.074 0.926 28 H 0.093 0.907 29 H 0.030 0.970 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.338 -10.151 2.122 11.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.246 6.246 3 C 0.063 3.937 4 C -0.229 4.229 5 C -0.102 4.102 6 C -0.088 4.088 7 C -0.059 4.059 8 C -0.175 4.175 9 C -0.105 4.105 10 C -0.087 4.087 11 C -0.350 4.350 12 C 0.044 3.956 13 C -0.526 4.526 14 H 0.082 0.918 15 C -0.181 4.181 16 N -0.466 5.466 17 Si 0.792 3.208 18 H -0.184 1.184 19 H -0.195 1.195 20 H -0.195 1.195 21 H 0.078 0.922 22 H 0.142 0.858 23 H 0.079 0.921 24 H 0.167 0.833 25 H 0.136 0.864 26 H 0.164 0.836 27 H 0.092 0.908 28 H 0.112 0.888 29 H 0.048 0.952 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.170 -10.207 1.964 11.609 hybrid contribution -0.386 1.390 0.078 1.444 sum -5.556 -8.817 2.043 10.620 Atomic orbital electron populations 1.23318 0.76783 1.05494 1.01988 1.85988 1.23227 1.26279 1.89061 1.19008 0.92245 0.84387 0.98105 1.21312 1.00713 0.91388 1.09479 1.21069 0.93908 0.97471 0.97795 1.19587 0.93722 0.94314 1.01142 1.20017 0.96785 0.91555 0.97517 1.20298 0.91746 0.97639 1.07866 1.20383 0.90083 0.99046 1.00982 1.19909 0.98531 0.93203 0.97089 1.22872 0.95374 0.96688 1.20027 1.17864 0.92178 0.89826 0.95730 1.19432 1.14716 0.91766 1.26687 0.91849 1.26518 0.94308 1.03428 0.93876 1.69951 1.30283 1.27398 1.19015 0.85357 0.78791 0.77492 0.79191 1.18407 1.19526 1.19450 0.92239 0.85778 0.92094 0.83312 0.86438 0.83635 0.90816 0.88835 0.95174 0.91938 0.90048 0.91265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.81 113.37 1.11 1.47 16 2 O -0.33 -9.57 10.49 -92.00 -0.97 -10.53 16 3 C 0.11 3.69 6.69 22.57 0.15 3.84 16 4 C -0.21 -7.40 9.02 22.36 0.20 -7.20 16 5 C -0.08 -3.65 9.40 22.42 0.21 -3.44 16 6 C -0.09 -4.23 5.76 -20.03 -0.12 -4.34 16 7 C -0.06 -2.45 5.66 -19.72 -0.11 -2.56 16 8 C -0.16 -5.65 9.63 22.33 0.22 -5.43 16 9 C -0.07 -2.58 5.91 29.68 0.18 -2.41 16 10 C -0.05 -2.22 6.06 29.64 0.18 -2.04 16 11 C -0.33 -17.91 8.80 25.15 0.22 -17.69 16 12 C 0.05 2.52 5.57 -20.32 -0.11 2.41 16 13 C -0.49 -27.95 8.24 23.36 0.19 -27.76 16 14 H 0.06 3.48 7.45 -2.91 -0.02 3.45 16 15 C 0.03 1.62 5.11 85.27 0.44 2.06 16 16 N -0.84 -47.42 11.02 21.83 0.24 -47.18 16 17 Si 0.97 41.23 29.59 68.60 2.03 43.26 16 18 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 19 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 20 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 21 H 0.06 1.07 7.66 -2.39 -0.02 1.06 16 22 H 0.12 1.60 8.14 -2.38 -0.02 1.58 16 23 H 0.06 1.08 7.64 -2.38 -0.02 1.06 16 24 H 0.15 4.14 6.27 -2.91 -0.02 4.12 16 25 H 0.12 5.17 7.18 -2.91 -0.02 5.15 16 26 H 0.15 4.38 8.06 -2.91 -0.02 4.36 16 27 H 0.07 2.71 8.14 -2.38 -0.02 2.69 16 28 H 0.09 2.84 8.05 -2.39 -0.02 2.82 16 29 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 30 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.08 4.88 6.13 -2.91 -0.02 4.86 16 32 H 0.28 14.33 8.30 -92.71 -0.77 13.57 16 Total: -1.00 -64.99 267.39 5.18 -59.81 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 1.12 Total: 17.73 kcal Atomic # 6 Polarization: -65.84 SS G_CDS: 2.76 Total: -63.09 kcal Atomic # 7 Polarization: -47.42 SS G_CDS: 0.24 Total: -47.18 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: -0.97 Total: -10.53 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Total: -64.99 5.18 -59.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260623759.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.757 kcal (2) G-P(sol) polarization free energy of solvation -64.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds