Wall clock time and date at job start Mon Mar 30 2020 03:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.33395 * 126.27163 * 2 1 4 4 C 1.30901 * 109.87465 * 179.97438 * 3 2 1 5 5 C 1.50701 * 125.31897 * 180.02562 * 4 3 2 6 6 N 1.35036 * 109.37051 * 0.02562 * 4 3 2 7 7 C 1.37058 * 133.11997 * 179.97438 * 6 4 3 8 8 C 1.34675 * 120.56071 * 180.02562 * 7 6 4 9 9 C 1.40812 * 120.61698 * 359.97438 * 8 7 6 10 10 C 1.50700 * 120.11434 * 179.97438 * 9 8 7 11 11 C 1.50692 * 109.47027 * 90.00407 * 10 9 8 12 12 H 1.07999 * 120.00490 * 359.97438 * 11 10 9 13 13 C 1.37885 * 120.00119 * 180.02562 * 11 10 9 14 14 N 1.31508 * 120.00198 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 119.99734 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.47019 * 90.00263 * 15 13 11 17 17 H 1.48497 * 109.47044 * 210.00368 * 15 13 11 18 18 H 1.48505 * 109.46920 * 330.00233 * 15 13 11 19 19 C 1.35879 * 119.77235 * 359.97438 * 9 8 7 20 20 C 1.37993 * 126.26776 * 179.97438 * 2 1 3 21 21 H 1.08999 * 109.47147 * 270.02117 * 1 2 3 22 22 H 1.09003 * 109.46880 * 30.02728 * 1 2 3 23 23 H 1.09003 * 109.46923 * 150.02203 * 1 2 3 24 24 H 1.09000 * 109.47539 * 269.98152 * 5 4 3 25 25 H 1.09008 * 109.46484 * 29.98202 * 5 4 3 26 26 H 1.09003 * 109.46930 * 149.97614 * 5 4 3 27 27 H 1.08003 * 119.72382 * 0.02562 * 7 6 4 28 28 H 1.08001 * 119.68961 * 179.70455 * 8 7 6 29 29 H 1.09001 * 109.47275 * 210.00106 * 10 9 8 30 30 H 1.08998 * 109.47274 * 329.99971 * 10 9 8 31 31 H 0.96999 * 120.00375 * 180.02562 * 14 13 11 32 32 H 1.08002 * 120.41478 * 179.97438 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2962 1.0755 0.0000 4 6 3.5520 0.7059 0.0006 5 6 4.7349 1.6396 0.0013 6 7 3.6221 -0.6426 0.0004 7 6 4.6697 -1.5263 0.0003 8 6 4.4455 -2.8542 -0.0004 9 6 3.1312 -3.3596 -0.0006 10 6 2.8932 -4.8477 -0.0020 11 6 2.8142 -5.3450 1.4183 12 1 2.9256 -4.6529 2.2399 13 6 2.6008 -6.6840 1.6691 14 7 2.5324 -7.1181 2.9086 15 14 2.4089 -7.8813 0.2481 16 1 3.7407 -8.4191 -0.1293 17 1 1.5219 -8.9991 0.6591 18 1 1.8116 -7.1773 -0.9150 19 6 2.0781 -2.5008 0.0006 20 6 2.3234 -1.1126 0.0005 21 1 -0.3633 0.0004 1.0277 22 1 -0.3633 0.8898 -0.5143 23 1 -0.3633 -0.8902 -0.5135 24 1 5.0209 1.8647 -1.0262 25 1 4.4683 2.5634 0.5149 26 1 5.5712 1.1662 0.5158 27 1 5.6838 -1.1546 0.0008 28 1 5.2815 -3.5379 -0.0053 29 1 1.9569 -5.0655 -0.5158 30 1 3.7145 -5.3465 -0.5165 31 1 2.3826 -8.0601 3.0850 32 1 1.0658 -2.8771 0.0000 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260627331.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:32 Heat of formation + Delta-G solvation = 67.403654 kcal Electronic energy + Delta-G solvation = -15261.753097 eV Core-core repulsion = 12801.845168 eV Total energy + Delta-G solvation = -2459.907929 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.42723 -37.43066 -34.27813 -32.92907 -31.58460 -30.09528 -29.10880 -28.49115 -24.72546 -23.43715 -22.07460 -20.63019 -19.89339 -16.89926 -16.83080 -16.07090 -15.76338 -14.88049 -14.38661 -14.15392 -13.54664 -13.11003 -12.90007 -12.80306 -12.55222 -12.43092 -12.07037 -11.88134 -11.78458 -11.28293 -11.09122 -10.63990 -10.46388 -10.16947 -9.86979 -9.65081 -9.33438 -8.75672 -8.67293 -6.80533 -6.16292 -4.17063 1.29880 1.71746 2.96471 3.21672 3.29005 3.30641 3.32096 3.93678 4.32920 4.55466 4.75602 4.96993 5.13772 5.24216 5.34511 5.47460 5.51032 5.60366 5.66534 5.80789 5.92618 5.95321 6.12506 6.23008 6.40959 6.56861 6.67475 6.84813 6.94454 7.11805 7.32753 7.55473 7.59433 8.25373 8.38284 8.87779 9.42790 10.96379 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.037717 B = 0.006506 C = 0.005998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.198363 B = 4302.601762 C = 4666.911832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C -0.020 4.020 3 N -0.452 5.452 4 C 0.135 3.865 5 C -0.055 4.055 6 N -0.361 5.361 7 C 0.023 3.977 8 C -0.104 4.104 9 C -0.035 4.035 10 C 0.019 3.981 11 C -0.518 4.518 12 H 0.073 0.927 13 C 0.071 3.929 14 N -0.897 5.897 15 Si 0.878 3.122 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.264 1.264 19 C -0.097 4.097 20 C 0.025 3.975 21 H 0.065 0.935 22 H 0.066 0.934 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.086 0.914 26 H 0.068 0.932 27 H 0.158 0.842 28 H 0.147 0.853 29 H 0.032 0.968 30 H 0.026 0.974 31 H 0.266 0.734 32 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.963 11.502 -7.565 14.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.155 4.155 3 N -0.168 5.168 4 C -0.118 4.118 5 C -0.114 4.114 6 N -0.032 5.032 7 C -0.096 4.096 8 C -0.126 4.126 9 C -0.038 4.038 10 C -0.018 4.018 11 C -0.556 4.556 12 H 0.092 0.908 13 C -0.131 4.131 14 N -0.535 5.535 15 Si 0.705 3.295 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.189 1.189 19 C -0.117 4.117 20 C -0.084 4.084 21 H 0.084 0.916 22 H 0.085 0.915 23 H 0.086 0.914 24 H 0.091 0.909 25 H 0.104 0.896 26 H 0.087 0.913 27 H 0.175 0.825 28 H 0.165 0.835 29 H 0.050 0.950 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.802 12.272 -7.448 14.626 hybrid contribution 0.342 -1.671 -0.458 1.766 sum 3.144 10.601 -7.906 13.593 Atomic orbital electron populations 1.19909 0.87251 1.02233 1.02015 1.20743 0.95986 0.86504 1.12247 1.69700 0.99478 1.30490 1.17129 1.22844 0.95111 0.79882 1.14001 1.20020 0.91591 0.96994 1.02799 1.42599 1.06928 1.07025 1.46673 1.21465 0.91502 0.89632 1.07028 1.20941 0.98775 0.93140 0.99697 1.20181 0.91364 0.98344 0.93928 1.18772 0.97505 0.86634 0.98860 1.20888 1.50468 0.94022 0.90214 0.90848 1.24991 0.94403 0.98135 0.95552 1.69890 1.49275 1.15489 1.18809 0.86807 0.78575 0.81026 0.83122 1.20114 1.21125 1.18871 1.20325 1.00583 0.87946 1.02822 1.19532 0.83655 0.95116 1.10120 0.91627 0.91547 0.91366 0.90902 0.89561 0.91300 0.82515 0.83526 0.94992 0.95538 0.92454 0.84031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.80 10.44 36.01 0.38 -0.42 16 2 C -0.02 -0.36 7.21 -82.00 -0.59 -0.95 16 3 N -0.45 -8.19 11.19 -6.40 -0.07 -8.26 16 4 C 0.14 2.21 7.96 -155.09 -1.23 0.97 16 5 C -0.06 -0.61 10.33 36.01 0.37 -0.24 16 6 N -0.36 -6.24 2.94 -58.15 -0.17 -6.41 16 7 C 0.02 0.36 10.80 -16.48 -0.18 0.18 16 8 C -0.10 -1.78 9.66 -39.87 -0.39 -2.16 16 9 C -0.04 -0.70 5.08 -104.50 -0.53 -1.23 16 10 C 0.02 0.44 4.18 -29.04 -0.12 0.32 16 11 C -0.52 -14.12 9.65 -34.44 -0.33 -14.45 16 12 H 0.07 2.22 7.98 -52.49 -0.42 1.80 16 13 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 14 N -0.90 -26.77 13.96 55.43 0.77 -26.00 16 15 Si 0.88 20.55 27.47 -169.99 -4.67 15.88 16 16 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.26 -5.89 6.54 56.52 0.37 -5.52 16 19 C -0.10 -1.87 9.74 -39.39 -0.38 -2.26 16 20 C 0.03 0.47 6.74 -84.09 -0.57 -0.09 16 21 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 22 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.09 0.88 8.14 -51.92 -0.42 0.46 16 26 H 0.07 0.64 8.04 -51.93 -0.42 0.22 16 27 H 0.16 1.73 7.98 -52.48 -0.42 1.31 16 28 H 0.15 2.20 8.06 -52.49 -0.42 1.77 16 29 H 0.03 0.71 7.14 -51.93 -0.37 0.34 16 30 H 0.03 0.57 7.52 -51.93 -0.39 0.18 16 31 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.14 2.57 8.06 -52.49 -0.42 2.14 16 LS Contribution 277.38 15.07 4.18 4.18 Total: -1.00 -32.08 277.38 -7.77 -39.86 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -4.14 Total: -0.81 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: -3.67 Total: -18.45 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: 0.53 Total: -40.66 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.67 Total: 15.88 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -32.08 -7.77 -39.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260627331.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.260 kcal (2) G-P(sol) polarization free energy of solvation -32.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds