Wall clock time and date at job start Mon Mar 30 2020 03:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.33395 * 126.27163 * 2 1 4 4 C 1.30901 * 109.87465 * 179.97438 * 3 2 1 5 5 C 1.50701 * 125.31897 * 180.02562 * 4 3 2 6 6 N 1.35036 * 109.37051 * 0.02562 * 4 3 2 7 7 C 1.37058 * 133.11997 * 179.97438 * 6 4 3 8 8 C 1.34675 * 120.56071 * 180.02562 * 7 6 4 9 9 C 1.40812 * 120.61698 * 359.97438 * 8 7 6 10 10 C 1.50700 * 120.11434 * 179.97438 * 9 8 7 11 11 C 1.50692 * 109.47027 * 90.00407 * 10 9 8 12 12 H 1.07999 * 120.00490 * 359.97438 * 11 10 9 13 13 C 1.37885 * 120.00119 * 180.02562 * 11 10 9 14 14 N 1.31508 * 120.00198 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 119.99734 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.47019 * 90.00263 * 15 13 11 17 17 H 1.48497 * 109.47044 * 210.00368 * 15 13 11 18 18 H 1.48505 * 109.46920 * 330.00233 * 15 13 11 19 19 C 1.35879 * 119.77235 * 359.97438 * 9 8 7 20 20 C 1.37993 * 126.26776 * 179.97438 * 2 1 3 21 21 H 1.08999 * 109.47147 * 270.02117 * 1 2 3 22 22 H 1.09003 * 109.46880 * 30.02728 * 1 2 3 23 23 H 1.09003 * 109.46923 * 150.02203 * 1 2 3 24 24 H 1.09000 * 109.47539 * 269.98152 * 5 4 3 25 25 H 1.09008 * 109.46484 * 29.98202 * 5 4 3 26 26 H 1.09003 * 109.46930 * 149.97614 * 5 4 3 27 27 H 1.08003 * 119.72382 * 0.02562 * 7 6 4 28 28 H 1.08001 * 119.68961 * 179.70455 * 8 7 6 29 29 H 1.09001 * 109.47275 * 210.00106 * 10 9 8 30 30 H 1.08998 * 109.47274 * 329.99971 * 10 9 8 31 31 H 0.96999 * 120.00375 * 180.02562 * 14 13 11 32 32 H 1.08002 * 120.41478 * 179.97438 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2962 1.0755 0.0000 4 6 3.5520 0.7059 0.0006 5 6 4.7349 1.6396 0.0013 6 7 3.6221 -0.6426 0.0004 7 6 4.6697 -1.5263 0.0003 8 6 4.4455 -2.8542 -0.0004 9 6 3.1312 -3.3596 -0.0006 10 6 2.8932 -4.8477 -0.0020 11 6 2.8142 -5.3450 1.4183 12 1 2.9256 -4.6529 2.2399 13 6 2.6008 -6.6840 1.6691 14 7 2.5324 -7.1181 2.9086 15 14 2.4089 -7.8813 0.2481 16 1 3.7407 -8.4191 -0.1293 17 1 1.5219 -8.9991 0.6591 18 1 1.8116 -7.1773 -0.9150 19 6 2.0781 -2.5008 0.0006 20 6 2.3234 -1.1126 0.0005 21 1 -0.3633 0.0004 1.0277 22 1 -0.3633 0.8898 -0.5143 23 1 -0.3633 -0.8902 -0.5135 24 1 5.0209 1.8647 -1.0262 25 1 4.4683 2.5634 0.5149 26 1 5.5712 1.1662 0.5158 27 1 5.6838 -1.1546 0.0008 28 1 5.2815 -3.5379 -0.0053 29 1 1.9569 -5.0655 -0.5158 30 1 3.7145 -5.3465 -0.5165 31 1 2.3826 -8.0601 3.0850 32 1 1.0658 -2.8771 0.0000 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260627331.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:32 Heat of formation + Delta-G solvation = 49.067509 kcal Electronic energy + Delta-G solvation = -15262.548212 eV Core-core repulsion = 12801.845168 eV Total energy + Delta-G solvation = -2460.703044 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.72116 -38.80370 -35.78092 -34.69284 -33.08016 -31.40291 -30.30449 -30.01076 -26.27108 -24.85051 -23.61555 -21.94564 -21.28709 -18.99063 -18.12843 -17.45556 -17.04903 -16.52213 -15.83197 -15.63200 -14.92466 -14.48289 -14.11230 -14.05692 -13.86880 -13.72152 -13.51911 -13.34689 -12.96492 -12.75032 -12.49850 -12.35386 -11.99305 -11.83011 -11.65410 -11.20691 -11.00270 -10.79280 -10.09629 -8.31014 -8.13420 -6.36770 -0.02773 0.36489 1.38055 1.40657 1.51841 1.72978 2.01602 2.35360 2.53952 3.04185 3.44865 3.58915 3.82121 3.92853 3.99483 4.30748 4.39699 4.57700 4.63705 4.72589 4.83769 4.87364 4.97659 5.01777 5.06319 5.09425 5.11301 5.22396 5.52302 5.62397 5.73591 5.81340 6.22992 6.35258 6.69505 6.94707 7.27118 8.86028 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.037717 B = 0.006506 C = 0.005998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.198363 B = 4302.601762 C = 4666.911832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.029 4.029 3 N -0.481 5.481 4 C 0.147 3.853 5 C -0.056 4.056 6 N -0.373 5.373 7 C 0.043 3.957 8 C -0.128 4.128 9 C -0.059 4.059 10 C 0.026 3.974 11 C -0.521 4.521 12 H 0.025 0.975 13 C 0.010 3.990 14 N -0.949 5.949 15 Si 0.951 3.049 16 H -0.262 1.262 17 H -0.286 1.286 18 H -0.244 1.244 19 C -0.108 4.108 20 C -0.008 4.008 21 H 0.070 0.930 22 H 0.079 0.921 23 H 0.077 0.923 24 H 0.094 0.906 25 H 0.095 0.905 26 H 0.092 0.908 27 H 0.207 0.793 28 H 0.165 0.835 29 H 0.033 0.967 30 H 0.041 0.959 31 H 0.268 0.732 32 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.280 12.494 -9.411 16.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.164 4.164 3 N -0.197 5.197 4 C -0.108 4.108 5 C -0.115 4.115 6 N -0.045 5.045 7 C -0.076 4.076 8 C -0.148 4.148 9 C -0.062 4.062 10 C -0.011 4.011 11 C -0.559 4.559 12 H 0.043 0.957 13 C -0.188 4.188 14 N -0.589 5.589 15 Si 0.774 3.226 16 H -0.186 1.186 17 H -0.212 1.212 18 H -0.168 1.168 19 C -0.127 4.127 20 C -0.117 4.117 21 H 0.088 0.912 22 H 0.098 0.902 23 H 0.095 0.905 24 H 0.113 0.887 25 H 0.113 0.887 26 H 0.111 0.889 27 H 0.224 0.776 28 H 0.182 0.818 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.114 13.275 -9.308 16.727 hybrid contribution -0.050 -1.780 0.192 1.792 sum 4.065 11.495 -9.115 15.223 Atomic orbital electron populations 1.20012 0.85465 1.03331 1.02627 1.21334 0.97481 0.86396 1.11149 1.69767 1.00534 1.30729 1.18676 1.23952 0.96107 0.80109 1.10661 1.20301 0.90153 0.96311 1.04703 1.42878 1.06863 1.07679 1.47052 1.22129 0.92926 0.88807 1.03739 1.21102 0.97931 0.94530 1.01268 1.20110 0.93237 0.96930 0.95904 1.18614 0.98011 0.88782 0.95708 1.21103 1.49779 0.93470 0.91584 0.95671 1.25978 0.93973 1.00315 0.98499 1.70055 1.51161 1.16127 1.21576 0.85643 0.79179 0.78078 0.79691 1.18640 1.21179 1.16765 1.20337 1.00485 0.88626 1.03278 1.19629 0.84994 0.95006 1.12077 0.91175 0.90238 0.90465 0.88726 0.88652 0.88882 0.77643 0.81776 0.94830 0.94044 0.92319 0.84352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.58 10.44 71.24 0.74 -0.84 16 2 C -0.03 -1.04 7.21 42.26 0.30 -0.73 16 3 N -0.48 -16.75 11.19 -174.15 -1.95 -18.70 16 4 C 0.15 4.42 7.96 138.01 1.10 5.51 16 5 C -0.06 -1.02 10.33 71.24 0.74 -0.29 16 6 N -0.37 -12.19 2.94 -337.90 -0.99 -13.18 16 7 C 0.04 1.18 10.80 83.06 0.90 2.08 16 8 C -0.13 -4.18 9.66 22.08 0.21 -3.97 16 9 C -0.06 -2.36 5.08 -19.78 -0.10 -2.46 16 10 C 0.03 1.17 4.18 29.10 0.12 1.29 16 11 C -0.52 -29.25 9.65 25.60 0.25 -29.00 16 12 H 0.02 1.60 7.98 -2.91 -0.02 1.58 16 13 C 0.01 0.55 5.47 84.66 0.46 1.01 16 14 N -0.95 -58.44 13.96 21.45 0.30 -58.14 16 15 Si 0.95 42.21 27.47 68.60 1.88 44.09 16 16 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 17 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 18 H -0.24 -9.97 6.54 99.48 0.65 -9.32 16 19 C -0.11 -4.22 9.74 22.39 0.22 -4.00 16 20 C -0.01 -0.30 6.74 38.77 0.26 -0.04 16 21 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 22 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 23 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 24 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 26 H 0.09 1.26 8.04 -2.39 -0.02 1.24 16 27 H 0.21 3.51 7.98 -2.91 -0.02 3.48 16 28 H 0.16 4.63 8.06 -2.91 -0.02 4.61 16 29 H 0.03 1.48 7.14 -2.39 -0.02 1.46 16 30 H 0.04 1.73 7.52 -2.39 -0.02 1.71 16 31 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 32 H 0.14 5.23 8.06 -2.91 -0.02 5.21 16 Total: -1.00 -71.83 277.38 5.49 -66.33 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: 1.05 Total: 11.04 kcal Atomic # 6 Polarization: -36.65 SS G_CDS: 5.20 Total: -31.44 kcal Atomic # 7 Polarization: -87.37 SS G_CDS: -2.65 Total: -90.02 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 1.88 Total: 44.09 kcal Total: -71.83 5.49 -66.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260627331.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.400 kcal (2) G-P(sol) polarization free energy of solvation -71.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds