Wall clock time and date at job start Mon Mar 30 2020 03:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99972 * 2 1 4 4 H 1.48500 * 109.47437 * 240.00162 * 3 2 1 5 5 H 1.48501 * 109.47113 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46938 * 120.00164 * 3 2 1 7 7 C 1.37877 * 119.99951 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00093 * 185.16256 * 7 2 1 9 9 C 1.50697 * 119.99883 * 5.16962 * 7 2 1 10 10 H 1.09004 * 109.47285 * 24.89936 * 9 7 2 11 11 C 1.50702 * 109.47343 * 144.89692 * 9 7 2 12 12 N 1.28562 * 122.64992 * 94.89743 * 11 9 7 13 13 C 1.46981 * 110.00333 * 179.97438 * 12 11 9 14 14 C 1.54219 * 103.96208 * 0.12554 * 13 12 11 15 15 N 1.36283 * 122.70788 * 275.00157 * 11 9 7 16 16 C 1.50699 * 109.47289 * 264.89878 * 9 7 2 17 17 C 1.38237 * 119.99852 * 306.29143 * 16 9 7 18 18 C 1.38235 * 119.99665 * 179.78526 * 17 16 9 19 19 C 1.38236 * 120.00184 * 0.44211 * 18 17 16 20 20 C 1.38230 * 119.99897 * 359.81115 * 19 18 17 21 21 C 1.38232 * 120.00126 * 126.55992 * 16 9 7 22 22 H 0.96999 * 119.99951 * 359.97438 * 1 2 3 23 23 H 1.08996 * 110.54834 * 241.46585 * 13 12 11 24 24 H 1.08995 * 110.55370 * 118.78635 * 13 12 11 25 25 H 1.09001 * 110.69560 * 118.32608 * 14 13 12 26 26 H 1.09005 * 110.69754 * 241.53578 * 14 13 12 27 27 H 0.96996 * 125.83270 * 359.97438 * 15 11 9 28 28 H 1.07998 * 119.99585 * 359.97438 * 17 16 9 29 29 H 1.08006 * 119.99622 * 180.27387 * 18 17 16 30 30 H 1.07997 * 119.99614 * 179.83434 * 19 18 17 31 31 H 1.07998 * 120.00008 * 180.02562 * 20 19 18 32 32 H 1.08003 * 120.00256 * 359.97438 * 21 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0812 -1.1960 0.0836 9 6 1.2556 -2.4964 -0.1187 10 1 0.3032 -2.3237 -0.6199 11 6 2.0743 -3.4758 -0.9197 12 7 2.8518 -4.3410 -0.3721 13 6 3.5113 -5.1503 -1.4067 14 6 2.9620 -4.5812 -2.7307 15 7 2.0514 -3.5141 -2.2818 16 6 1.0047 -3.0582 1.2569 17 6 2.0588 -3.2375 2.1331 18 6 1.8279 -3.7487 3.3966 19 6 0.5444 -4.0892 3.7806 20 6 -0.5089 -3.9149 2.9025 21 6 -0.2787 -3.3996 1.6406 22 1 -0.4850 0.8400 0.0004 23 1 3.2413 -6.2009 -1.3005 24 1 4.5931 -5.0273 -1.3569 25 1 3.7687 -4.1698 -3.3373 26 1 2.4159 -5.3468 -3.2820 27 1 1.5255 -2.9371 -2.8573 28 1 3.0621 -2.9752 1.8316 29 1 2.6509 -3.8846 4.0827 30 1 0.3646 -4.4911 4.7667 31 1 -1.5117 -4.1805 3.2027 32 1 -1.1017 -3.2632 0.9547 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260633340.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:17 Heat of formation + Delta-G solvation = 50.323496 kcal Electronic energy + Delta-G solvation = -15713.672352 eV Core-core repulsion = 13253.023771 eV Total energy + Delta-G solvation = -2460.648580 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.30289 -37.91755 -33.83832 -31.44428 -30.66744 -29.82010 -28.84327 -26.64450 -23.49395 -21.89461 -21.32689 -20.60039 -18.59855 -16.69951 -16.27910 -15.63538 -15.11563 -14.55388 -14.16102 -13.70953 -13.35476 -12.62852 -12.41631 -12.15905 -11.82668 -11.70971 -11.67931 -11.55830 -10.98543 -10.82040 -10.56071 -10.17084 -10.11448 -9.67865 -9.20405 -8.96791 -8.63415 -7.83518 -7.51074 -7.26071 -6.19814 -4.24477 2.47796 2.52288 3.25336 3.30174 3.32232 3.58205 4.20248 4.34589 4.91341 5.12573 5.20732 5.51136 5.62371 5.80438 5.85806 5.91337 6.00876 6.07744 6.33066 6.36468 6.54546 6.69489 6.84401 7.03732 7.09786 7.13487 7.30674 7.47776 7.59821 7.72761 7.88593 8.08257 8.18439 8.60496 8.78792 9.03798 9.39891 10.88087 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.015600 B = 0.013342 C = 0.008476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.442174 B = 2098.145639 C = 3302.739704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.071 3.929 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.505 4.505 8 H 0.062 0.938 9 C 0.120 3.880 10 H 0.079 0.921 11 C 0.404 3.596 12 N -0.595 5.595 13 C 0.023 3.977 14 C 0.077 3.923 15 N -0.755 5.755 16 C -0.015 4.015 17 C -0.067 4.067 18 C -0.140 4.140 19 C -0.149 4.149 20 C -0.137 4.137 21 C -0.120 4.120 22 H 0.266 0.734 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.411 0.589 28 H 0.117 0.883 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.544 -6.119 -1.589 6.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.134 4.134 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.543 4.543 8 H 0.080 0.920 9 C 0.099 3.901 10 H 0.097 0.903 11 C 0.128 3.872 12 N -0.325 5.325 13 C -0.108 4.108 14 C -0.050 4.050 15 N -0.399 5.399 16 C -0.016 4.016 17 C -0.085 4.085 18 C -0.158 4.158 19 C -0.167 4.167 20 C -0.155 4.155 21 C -0.139 4.139 22 H 0.076 0.924 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.248 0.752 28 H 0.135 0.865 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.122 0.878 32 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.793 -6.437 -0.764 6.725 hybrid contribution 0.152 1.270 -1.169 1.733 sum 1.945 -5.167 -1.933 5.850 Atomic orbital electron populations 1.69912 1.05936 1.27377 1.48536 1.24967 0.94918 0.99373 0.94093 0.86541 0.79585 0.82411 0.78889 1.20145 1.21145 1.19921 1.20709 0.93342 0.88424 1.51868 0.92020 1.16926 0.95751 0.89609 0.87800 0.90271 1.23937 0.90520 0.90656 0.82136 1.74489 1.18239 1.13315 1.26467 1.23007 0.99599 0.98912 0.89245 1.22497 0.93416 0.90738 0.98320 1.45934 1.49179 1.38558 1.06182 1.20103 0.92062 0.92156 0.97324 1.20869 0.99339 0.96238 0.92083 1.20976 0.96125 1.01800 0.96876 1.20779 0.93458 1.03641 0.98819 1.20855 0.97800 1.02078 0.94748 1.20984 0.96954 0.99738 0.96184 0.92425 0.91431 0.91361 0.92245 0.92299 0.75176 0.86466 0.87767 0.87961 0.87810 0.87256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.81 12.84 55.43 0.71 -23.10 16 2 C 0.07 1.85 5.45 -17.82 -0.10 1.75 16 3 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.50 -13.14 7.65 -34.44 -0.26 -13.40 16 8 H 0.06 1.65 7.82 -52.49 -0.41 1.24 16 9 C 0.12 2.88 2.50 -94.08 -0.24 2.64 16 10 H 0.08 2.01 7.13 -51.93 -0.37 1.64 16 11 C 0.40 8.85 6.74 -155.85 -1.05 7.80 16 12 N -0.60 -12.91 9.69 -57.33 -0.56 -13.46 16 13 C 0.02 0.39 8.05 -3.14 -0.03 0.37 16 14 C 0.08 1.19 8.13 -2.98 -0.02 1.17 16 15 N -0.76 -14.04 6.53 -57.21 -0.37 -14.41 16 16 C -0.02 -0.36 4.59 -104.62 -0.48 -0.84 16 17 C -0.07 -1.52 8.01 -39.58 -0.32 -1.84 16 18 C -0.14 -2.79 10.05 -39.58 -0.40 -3.19 16 19 C -0.15 -2.81 10.05 -39.59 -0.40 -3.21 16 20 C -0.14 -2.67 10.05 -39.58 -0.40 -3.07 16 21 C -0.12 -2.65 9.67 -39.58 -0.38 -3.03 16 22 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 23 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 24 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.41 7.03 8.96 -40.82 -0.37 6.67 16 28 H 0.12 2.74 7.65 -52.49 -0.40 2.34 16 29 H 0.10 1.80 8.06 -52.48 -0.42 1.38 16 30 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.10 1.73 8.06 -52.49 -0.42 1.30 16 32 H 0.11 2.33 7.96 -52.48 -0.42 1.91 16 LS Contribution 275.42 15.07 4.15 4.15 Total: -1.00 -28.37 275.42 -9.22 -37.58 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -4.06 Total: 8.53 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: -4.07 Total: -14.84 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: -0.22 Total: -50.97 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -28.37 -9.22 -37.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260633340.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.906 kcal (2) G-P(sol) polarization free energy of solvation -28.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds