Wall clock time and date at job start Mon Mar 30 2020 03:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99852 * 2 1 4 4 H 1.48501 * 109.46648 * 265.56836 * 3 2 1 5 5 H 1.48498 * 109.47116 * 25.56093 * 3 2 1 6 6 H 1.48496 * 109.47238 * 145.56749 * 3 2 1 7 7 C 1.37883 * 120.00246 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99676 * 352.91932 * 7 2 1 9 9 C 1.50692 * 119.99968 * 172.92070 * 7 2 1 10 10 H 1.09009 * 109.47499 * 355.47983 * 9 7 2 11 11 C 1.50699 * 109.47013 * 235.48066 * 9 7 2 12 12 N 1.28250 * 122.70602 * 266.33419 * 11 9 7 13 13 C 1.46973 * 110.18661 * 180.02562 * 12 11 9 14 14 C 1.54227 * 103.83757 * 0.02562 * 13 12 11 15 15 N 1.36285 * 122.70266 * 86.36344 * 11 9 7 16 16 C 1.50703 * 109.47325 * 115.48272 * 9 7 2 17 17 C 1.38227 * 119.99831 * 52.69136 * 16 9 7 18 18 C 1.38239 * 120.00261 * 179.79174 * 17 16 9 19 19 C 1.38236 * 119.99375 * 0.43985 * 18 17 16 20 20 C 1.38232 * 120.00202 * 359.81381 * 19 18 17 21 21 C 1.38232 * 120.00292 * 359.97438 * 20 19 18 22 22 H 0.96993 * 120.00281 * 359.97438 * 1 2 3 23 23 H 1.09009 * 110.55505 * 118.58650 * 13 12 11 24 24 H 1.08991 * 110.55843 * 241.41395 * 13 12 11 25 25 H 1.08997 * 110.69477 * 241.60992 * 14 13 12 26 26 H 1.08992 * 110.84795 * 118.45768 * 14 13 12 27 27 H 0.96993 * 125.83926 * 359.95118 * 15 11 9 28 28 H 1.08003 * 120.00376 * 359.97438 * 17 16 9 29 29 H 1.07991 * 120.00538 * 180.27239 * 18 17 16 30 30 H 1.08001 * 119.99825 * 179.83238 * 19 18 17 31 31 H 1.08007 * 119.99965 * 180.02562 * 20 19 18 32 32 H 1.08000 * 120.00577 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5902 1.9923 -1.3959 5 1 1.4028 2.6780 0.6041 6 1 3.4966 1.4692 0.7916 7 6 2.0046 -1.1941 0.0005 8 1 1.4708 -2.1257 0.1162 9 6 3.5029 -1.1990 -0.1603 10 1 3.8522 -0.1827 -0.3431 11 6 3.8801 -2.0770 -1.3256 12 7 4.1883 -3.3144 -1.1898 13 6 4.5082 -3.9040 -2.4975 14 6 4.3256 -2.7331 -3.4846 15 7 3.9217 -1.6197 -2.6088 16 6 4.1414 -1.7312 1.0968 17 6 3.7368 -2.9466 1.6163 18 6 4.3254 -3.4368 2.7670 19 6 5.3122 -2.7073 3.4032 20 6 5.7131 -1.4894 2.8866 21 6 5.1276 -1.0012 1.7335 22 1 -0.4850 0.8400 0.0004 23 1 5.5379 -4.2613 -2.5146 24 1 3.8172 -4.7137 -2.7317 25 1 3.5415 -2.9577 -4.2077 26 1 5.2623 -2.5042 -3.9925 27 1 3.7200 -0.7156 -2.8964 28 1 2.9629 -3.5147 1.1215 29 1 4.0125 -4.3884 3.1704 30 1 5.7702 -3.0889 4.3038 31 1 6.4845 -0.9196 3.3835 32 1 5.4411 -0.0499 1.3297 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260633350.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:18 Heat of formation + Delta-G solvation = 53.605881 kcal Electronic energy + Delta-G solvation = -15756.307206 eV Core-core repulsion = 13295.800961 eV Total energy + Delta-G solvation = -2460.506246 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.44489 -38.13200 -33.90277 -31.77785 -30.78478 -30.04463 -28.98760 -27.08302 -23.24719 -22.03716 -21.50914 -20.73411 -18.64417 -17.05213 -16.50640 -15.88526 -15.21000 -14.64565 -14.26275 -13.73032 -13.46085 -12.82742 -12.61424 -12.43511 -12.00073 -11.90062 -11.84486 -11.71756 -11.07887 -11.01132 -10.62129 -10.34684 -9.93192 -9.92018 -9.29868 -9.04243 -8.74012 -8.06086 -7.74428 -7.32167 -6.26650 -4.27559 2.22612 2.30412 3.12137 3.24993 3.26029 3.50918 4.12056 4.23300 4.69631 5.02396 5.15578 5.47924 5.55830 5.61591 5.66806 5.76529 5.84811 6.03667 6.06988 6.21918 6.33833 6.40555 6.49765 6.81661 6.87653 6.95312 7.05109 7.24763 7.34555 7.39770 7.69726 7.88461 8.27808 8.53306 8.80246 8.95322 9.32027 10.85179 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.015910 B = 0.014254 C = 0.009126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.423397 B = 1963.895980 C = 3067.363195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.079 3.921 3 Si 0.867 3.133 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.259 1.259 7 C -0.500 4.500 8 H 0.084 0.916 9 C 0.100 3.900 10 H 0.056 0.944 11 C 0.405 3.595 12 N -0.592 5.592 13 C 0.025 3.975 14 C 0.078 3.922 15 N -0.758 5.758 16 C -0.030 4.030 17 C -0.059 4.059 18 C -0.134 4.134 19 C -0.143 4.143 20 C -0.134 4.134 21 C -0.135 4.135 22 H 0.268 0.732 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.408 0.592 28 H 0.123 0.877 29 H 0.109 0.891 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.368 -1.909 -1.620 9.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.125 4.125 3 Si 0.694 3.306 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.538 4.538 8 H 0.102 0.898 9 C 0.079 3.921 10 H 0.074 0.926 11 C 0.128 3.872 12 N -0.321 5.321 13 C -0.106 4.106 14 C -0.049 4.049 15 N -0.401 5.401 16 C -0.031 4.031 17 C -0.077 4.077 18 C -0.152 4.152 19 C -0.161 4.161 20 C -0.152 4.152 21 C -0.153 4.153 22 H 0.078 0.922 23 H 0.087 0.913 24 H 0.089 0.911 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.245 0.755 28 H 0.141 0.859 29 H 0.127 0.873 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 9.326 -2.630 -1.040 9.745 hybrid contribution 0.151 1.747 -1.044 2.041 sum 9.477 -0.883 -2.084 9.744 Atomic orbital electron populations 1.69872 1.06242 1.27399 1.48425 1.25064 0.94781 0.98764 0.93876 0.86990 0.80804 0.83896 0.78944 1.19983 1.20956 1.18393 1.20663 0.86957 0.95482 1.50721 0.89790 1.17148 0.97422 0.92446 0.85108 0.92559 1.23670 0.85340 0.91940 0.86255 1.74248 1.30453 1.07174 1.20221 1.23005 1.00734 0.96870 0.89947 1.22502 0.98970 0.89093 0.94306 1.45932 1.75392 1.12738 1.06030 1.20026 0.92599 0.93805 0.96711 1.20911 0.97977 0.95039 0.93794 1.21050 0.97791 0.99594 0.96733 1.20855 0.99270 0.95859 1.00118 1.20848 1.00683 0.96608 0.97025 1.20990 0.97681 0.99812 0.96807 0.92187 0.91285 0.91091 0.92071 0.92224 0.75460 0.85862 0.87252 0.87540 0.87474 0.87466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.55 13.96 55.43 0.77 -24.78 16 2 C 0.08 2.14 5.47 -17.82 -0.10 2.05 16 3 Si 0.87 19.88 26.92 -169.99 -4.58 15.30 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.26 -5.72 6.85 56.52 0.39 -5.33 16 7 C -0.50 -13.32 8.25 -34.44 -0.28 -13.60 16 8 H 0.08 2.50 7.69 -52.49 -0.40 2.09 16 9 C 0.10 2.30 2.35 -94.08 -0.22 2.08 16 10 H 0.06 1.26 4.63 -51.92 -0.24 1.02 16 11 C 0.41 8.76 6.72 -156.10 -1.05 7.71 16 12 N -0.59 -12.66 9.75 -57.40 -0.56 -13.22 16 13 C 0.02 0.42 8.06 -3.14 -0.03 0.40 16 14 C 0.08 1.20 8.13 -2.96 -0.02 1.18 16 15 N -0.76 -14.09 6.53 -57.27 -0.37 -14.46 16 16 C -0.03 -0.67 4.59 -104.62 -0.48 -1.15 16 17 C -0.06 -1.27 8.04 -39.59 -0.32 -1.59 16 18 C -0.13 -2.49 10.05 -39.58 -0.40 -2.89 16 19 C -0.14 -2.46 10.05 -39.58 -0.40 -2.86 16 20 C -0.13 -2.37 10.05 -39.59 -0.40 -2.76 16 21 C -0.13 -2.70 9.67 -39.58 -0.38 -3.08 16 22 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 23 H 0.07 1.08 8.14 -51.92 -0.42 0.65 16 24 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.41 7.00 8.96 -40.82 -0.37 6.63 16 28 H 0.12 2.81 7.38 -52.48 -0.39 2.43 16 29 H 0.11 1.76 8.06 -52.49 -0.42 1.33 16 30 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 31 H 0.11 1.58 8.06 -52.48 -0.42 1.15 16 32 H 0.11 2.01 7.96 -52.49 -0.42 1.59 16 LS Contribution 271.31 15.07 4.09 4.09 Total: -1.00 -29.56 271.31 -8.65 -38.21 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -3.92 Total: 9.39 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -4.08 Total: -14.53 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: -0.16 Total: -52.47 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -4.58 Total: 15.30 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.56 -8.65 -38.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260633350.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.817 kcal (2) G-P(sol) polarization free energy of solvation -29.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds