Wall clock time and date at job start Mon Mar 30 2020 03:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99852 * 2 1 4 4 H 1.48501 * 109.46648 * 265.56836 * 3 2 1 5 5 H 1.48498 * 109.47116 * 25.56093 * 3 2 1 6 6 H 1.48496 * 109.47238 * 145.56749 * 3 2 1 7 7 C 1.37883 * 120.00246 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99676 * 352.91932 * 7 2 1 9 9 C 1.50692 * 119.99968 * 172.92070 * 7 2 1 10 10 H 1.09009 * 109.47499 * 355.47983 * 9 7 2 11 11 C 1.50699 * 109.47013 * 235.48066 * 9 7 2 12 12 N 1.28250 * 122.70602 * 266.33419 * 11 9 7 13 13 C 1.46973 * 110.18661 * 180.02562 * 12 11 9 14 14 C 1.54227 * 103.83757 * 0.02562 * 13 12 11 15 15 N 1.36285 * 122.70266 * 86.36344 * 11 9 7 16 16 C 1.50703 * 109.47325 * 115.48272 * 9 7 2 17 17 C 1.38227 * 119.99831 * 52.69136 * 16 9 7 18 18 C 1.38239 * 120.00261 * 179.79174 * 17 16 9 19 19 C 1.38236 * 119.99375 * 0.43985 * 18 17 16 20 20 C 1.38232 * 120.00202 * 359.81381 * 19 18 17 21 21 C 1.38232 * 120.00292 * 359.97438 * 20 19 18 22 22 H 0.96993 * 120.00281 * 359.97438 * 1 2 3 23 23 H 1.09009 * 110.55505 * 118.58650 * 13 12 11 24 24 H 1.08991 * 110.55843 * 241.41395 * 13 12 11 25 25 H 1.08997 * 110.69477 * 241.60992 * 14 13 12 26 26 H 1.08992 * 110.84795 * 118.45768 * 14 13 12 27 27 H 0.96993 * 125.83926 * 359.95118 * 15 11 9 28 28 H 1.08003 * 120.00376 * 359.97438 * 17 16 9 29 29 H 1.07991 * 120.00538 * 180.27239 * 18 17 16 30 30 H 1.08001 * 119.99825 * 179.83238 * 19 18 17 31 31 H 1.08007 * 119.99965 * 180.02562 * 20 19 18 32 32 H 1.08000 * 120.00577 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5902 1.9923 -1.3959 5 1 1.4028 2.6780 0.6041 6 1 3.4966 1.4692 0.7916 7 6 2.0046 -1.1941 0.0005 8 1 1.4708 -2.1257 0.1162 9 6 3.5029 -1.1990 -0.1603 10 1 3.8522 -0.1827 -0.3431 11 6 3.8801 -2.0770 -1.3256 12 7 4.1883 -3.3144 -1.1898 13 6 4.5082 -3.9040 -2.4975 14 6 4.3256 -2.7331 -3.4846 15 7 3.9217 -1.6197 -2.6088 16 6 4.1414 -1.7312 1.0968 17 6 3.7368 -2.9466 1.6163 18 6 4.3254 -3.4368 2.7670 19 6 5.3122 -2.7073 3.4032 20 6 5.7131 -1.4894 2.8866 21 6 5.1276 -1.0012 1.7335 22 1 -0.4850 0.8400 0.0004 23 1 5.5379 -4.2613 -2.5146 24 1 3.8172 -4.7137 -2.7317 25 1 3.5415 -2.9577 -4.2077 26 1 5.2623 -2.5042 -3.9925 27 1 3.7200 -0.7156 -2.8964 28 1 2.9629 -3.5147 1.1215 29 1 4.0125 -4.3884 3.1704 30 1 5.7702 -3.0889 4.3038 31 1 6.4845 -0.9196 3.3835 32 1 5.4411 -0.0499 1.3297 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260633350.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:18 Heat of formation + Delta-G solvation = 33.878845 kcal Electronic energy + Delta-G solvation = -15757.162635 eV Core-core repulsion = 13295.800961 eV Total energy + Delta-G solvation = -2461.361674 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.96568 -39.60876 -35.69255 -33.63578 -32.30126 -31.52659 -30.42591 -28.81661 -25.07374 -23.46664 -22.95486 -22.26342 -20.22943 -19.03960 -18.03017 -17.42763 -16.60716 -16.26346 -15.89289 -15.28914 -14.94064 -14.69879 -14.13220 -13.96882 -13.68154 -13.48504 -13.26435 -13.00399 -12.77671 -12.62571 -12.19018 -11.87615 -11.84608 -11.54887 -11.11613 -10.77408 -10.54199 -9.54920 -9.28419 -8.79079 -8.33690 -6.40019 0.72952 0.81305 1.31719 1.38853 1.47753 1.88333 2.30847 2.70263 3.01586 3.24775 3.74538 4.07661 4.16222 4.26032 4.32118 4.39902 4.50848 4.56839 4.59178 4.70169 4.89861 4.99117 5.06458 5.29355 5.34992 5.43071 5.46329 5.62126 5.78584 5.85988 6.04499 6.28191 6.40664 6.64273 7.03813 7.24057 7.40464 8.82328 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.015910 B = 0.014254 C = 0.009126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.423397 B = 1963.895980 C = 3067.363195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.024 3.976 3 Si 0.931 3.069 4 H -0.251 1.251 5 H -0.287 1.287 6 H -0.242 1.242 7 C -0.498 4.498 8 H 0.030 0.970 9 C 0.102 3.898 10 H 0.064 0.936 11 C 0.391 3.609 12 N -0.618 5.618 13 C 0.017 3.983 14 C 0.081 3.919 15 N -0.759 5.759 16 C -0.058 4.058 17 C -0.085 4.085 18 C -0.138 4.138 19 C -0.135 4.135 20 C -0.128 4.128 21 C -0.148 4.148 22 H 0.270 0.730 23 H 0.087 0.913 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.092 0.908 27 H 0.414 0.586 28 H 0.091 0.909 29 H 0.130 0.870 30 H 0.147 0.853 31 H 0.146 0.854 32 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.357 -1.016 -1.309 12.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.175 4.175 3 Si 0.754 3.246 4 H -0.175 1.175 5 H -0.213 1.213 6 H -0.166 1.166 7 C -0.536 4.536 8 H 0.049 0.951 9 C 0.081 3.919 10 H 0.081 0.919 11 C 0.113 3.887 12 N -0.348 5.348 13 C -0.113 4.113 14 C -0.044 4.044 15 N -0.403 5.403 16 C -0.059 4.059 17 C -0.103 4.103 18 C -0.156 4.156 19 C -0.153 4.153 20 C -0.146 4.146 21 C -0.166 4.166 22 H 0.079 0.921 23 H 0.105 0.895 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.110 0.890 27 H 0.252 0.748 28 H 0.109 0.891 29 H 0.148 0.852 30 H 0.165 0.835 31 H 0.164 0.836 32 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 12.339 -1.756 -0.754 12.486 hybrid contribution -0.762 1.284 -1.099 1.854 sum 11.577 -0.472 -1.853 11.734 Atomic orbital electron populations 1.70030 1.08293 1.28455 1.50771 1.25924 0.95474 1.02723 0.93418 0.85957 0.79753 0.78491 0.80411 1.17508 1.21285 1.16587 1.20644 0.89210 0.93490 1.50280 0.95118 1.17020 0.94765 0.93379 0.86719 0.91851 1.23393 0.86342 0.92055 0.86935 1.74183 1.30252 1.07366 1.23032 1.23172 1.01846 0.97554 0.88711 1.22671 1.00945 0.87214 0.93588 1.46015 1.75041 1.13740 1.05532 1.20025 0.94388 0.94708 0.96792 1.20788 0.98511 0.95491 0.95507 1.21335 0.97874 1.00657 0.95719 1.21315 0.97924 0.95278 1.00778 1.21303 1.00578 0.96788 0.95882 1.21227 0.97458 1.00210 0.97711 0.92134 0.89455 0.90824 0.90757 0.88967 0.74803 0.89122 0.85177 0.83529 0.83633 0.86214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.60 13.96 21.45 0.30 -56.30 16 2 C 0.02 1.32 5.47 84.66 0.46 1.78 16 3 Si 0.93 40.84 26.92 68.60 1.85 42.69 16 4 H -0.25 -10.00 7.11 99.48 0.71 -9.30 16 5 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.24 -9.87 6.85 99.48 0.68 -9.19 16 7 C -0.50 -27.81 8.25 25.60 0.21 -27.60 16 8 H 0.03 1.98 7.69 -2.91 -0.02 1.96 16 9 C 0.10 4.76 2.35 -13.03 -0.03 4.73 16 10 H 0.06 2.79 4.63 -2.38 -0.01 2.78 16 11 C 0.39 17.01 6.72 138.37 0.93 17.94 16 12 N -0.62 -26.77 9.75 -335.51 -3.27 -30.04 16 13 C 0.02 0.57 8.06 86.70 0.70 1.26 16 14 C 0.08 2.34 8.13 86.64 0.70 3.05 16 15 N -0.76 -27.47 6.53 -335.11 -2.19 -29.66 16 16 C -0.06 -2.58 4.59 -19.87 -0.09 -2.67 16 17 C -0.08 -3.74 8.04 22.27 0.18 -3.56 16 18 C -0.14 -4.98 10.05 22.27 0.22 -4.76 16 19 C -0.14 -4.18 10.05 22.27 0.22 -3.95 16 20 C -0.13 -4.04 10.05 22.27 0.22 -3.82 16 21 C -0.15 -5.62 9.67 22.27 0.22 -5.40 16 22 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 23 H 0.09 2.56 8.14 -2.38 -0.02 2.54 16 24 H 0.07 2.37 8.14 -2.39 -0.02 2.36 16 25 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.41 13.65 8.96 -92.71 -0.83 12.82 16 28 H 0.09 4.49 7.38 -2.91 -0.02 4.46 16 29 H 0.13 4.01 8.06 -2.92 -0.02 3.99 16 30 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 31 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 32 H 0.12 4.14 7.96 -2.91 -0.02 4.12 16 Total: -1.00 -67.39 271.31 0.90 -66.49 By element: Atomic # 1 Polarization: 29.56 SS G_CDS: 0.27 Total: 29.83 kcal Atomic # 6 Polarization: -26.96 SS G_CDS: 3.95 Total: -23.01 kcal Atomic # 7 Polarization: -110.84 SS G_CDS: -5.16 Total: -116.00 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 1.85 Total: 42.69 kcal Total: -67.39 0.90 -66.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260633350.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.369 kcal (2) G-P(sol) polarization free energy of solvation -67.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds