Wall clock time and date at job start Mon Mar 30 2020 03:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50694 * 109.47150 * 2 1 4 4 N 1.30232 * 125.74879 * 270.02134 * 3 2 1 5 5 N 1.40019 * 109.64158 * 179.97438 * 4 3 2 6 6 C 1.46496 * 125.89576 * 179.97438 * 5 4 3 7 7 C 1.36392 * 108.20345 * 0.02562 * 5 4 3 8 8 C 1.40412 * 106.80826 * 0.02562 * 7 5 4 9 9 C 1.40346 * 119.73895 * 179.97438 * 8 7 5 10 10 C 1.38047 * 120.27061 * 0.27429 * 9 8 7 11 11 C 1.38044 * 120.84780 * 359.46754 * 10 9 8 12 12 C 1.40551 * 120.28812 * 0.52022 * 11 10 9 13 13 C 1.40899 * 120.32235 * 179.72549 * 12 11 10 14 14 H 1.07996 * 119.99983 * 206.11588 * 13 12 11 15 15 C 1.39982 * 119.99898 * 26.12423 * 13 12 11 16 16 N 1.30831 * 120.00014 * 17.50328 * 15 13 12 17 17 Si 1.86798 * 119.99673 * 197.50638 * 15 13 12 18 18 H 1.48494 * 109.47362 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47245 * 119.99985 * 17 15 13 20 20 H 1.48498 * 109.46959 * 239.99391 * 17 15 13 21 21 H 1.08996 * 109.47062 * 300.00515 * 1 2 3 22 22 H 1.09005 * 109.47169 * 59.99989 * 1 2 3 23 23 H 1.09001 * 109.47233 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46771 * 239.99601 * 2 1 3 25 25 H 1.09003 * 109.46692 * 119.99840 * 2 1 3 26 26 H 1.09000 * 109.46910 * 95.83097 * 6 5 4 27 27 H 1.09003 * 109.47136 * 215.81963 * 6 5 4 28 28 H 1.09000 * 109.47517 * 335.82416 * 6 5 4 29 29 H 1.07997 * 119.86327 * 180.02562 * 9 8 7 30 30 H 1.07998 * 119.57352 * 179.72586 * 10 9 8 31 31 H 1.08004 * 119.85322 * 180.26661 * 11 10 9 32 32 H 0.97005 * 120.00057 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2856 2.1382 -1.0569 5 7 2.7336 3.4067 -0.6685 6 6 3.1184 4.4951 -1.5703 7 6 2.7509 3.4535 0.6945 8 6 2.3095 2.2006 1.1494 9 6 2.2230 1.9513 2.5279 10 6 2.5644 2.9339 3.4355 11 6 3.0055 4.1701 3.0078 12 6 3.1036 4.4515 1.6343 13 6 3.5482 5.7150 1.1970 14 1 3.2432 6.0903 0.2314 15 6 4.3854 6.4837 2.0142 16 7 5.0291 5.9211 3.0046 17 14 4.5835 8.3127 1.6905 18 1 3.7554 8.7010 0.5207 19 1 4.1432 9.0773 2.8850 20 1 6.0100 8.6138 1.4084 21 1 -0.3633 0.5139 0.8899 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.2713 5.1662 -1.7120 27 1 3.9516 5.0485 -1.1371 28 1 3.4187 4.0806 -2.5327 29 1 1.8842 0.9882 2.8800 30 1 2.4894 2.7314 4.4936 31 1 3.2725 4.9257 3.7320 32 1 5.6090 6.4538 3.5711 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260639375.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:18 Heat of formation + Delta-G solvation = 68.950359 kcal Electronic energy + Delta-G solvation = -15699.646590 eV Core-core repulsion = 13239.805731 eV Total energy + Delta-G solvation = -2459.840859 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.22351 -35.96044 -34.29461 -33.35754 -31.04047 -29.33235 -28.35752 -26.30875 -24.62406 -22.84952 -21.40032 -20.48544 -18.70193 -17.16253 -15.73990 -15.50309 -14.82608 -14.56530 -13.87771 -13.68540 -13.44963 -12.86725 -12.76250 -12.46885 -11.91848 -11.72042 -11.55223 -11.26470 -11.14781 -11.00374 -10.76095 -10.59187 -10.18527 -9.93399 -9.73860 -9.44021 -9.26465 -8.56174 -7.24683 -6.92883 -6.70772 -4.29745 2.25885 2.89158 3.02376 3.06453 3.09530 3.46707 3.64433 3.86315 4.60070 5.23881 5.41883 5.52066 5.64541 5.75466 5.91870 5.97337 6.03640 6.15118 6.17832 6.24072 6.46575 6.54703 6.61014 6.72629 6.93118 7.00879 7.19349 7.42358 7.61625 7.87218 8.06521 8.14655 8.19918 8.50464 8.67403 8.76861 8.93122 10.12329 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.035615 B = 0.008574 C = 0.007193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.990786 B = 3265.091655 C = 3891.573558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.034 4.034 3 C 0.062 3.938 4 N -0.286 5.286 5 N -0.395 5.395 6 C 0.117 3.883 7 C 0.065 3.935 8 C -0.142 4.142 9 C -0.191 4.191 10 C -0.104 4.104 11 C -0.175 4.175 12 C 0.110 3.890 13 C -0.466 4.466 14 H 0.080 0.920 15 C 0.077 3.923 16 N -0.787 5.787 17 Si 0.905 3.095 18 H -0.261 1.261 19 H -0.271 1.271 20 H -0.274 1.274 21 H 0.058 0.942 22 H 0.052 0.948 23 H 0.054 0.946 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.055 0.945 27 H 0.094 0.906 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.121 0.879 32 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.219 -3.002 -2.869 5.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.073 4.073 3 C -0.110 4.110 4 N -0.104 5.104 5 N -0.184 5.184 6 C -0.025 4.025 7 C -0.050 4.050 8 C -0.150 4.150 9 C -0.213 4.213 10 C -0.124 4.124 11 C -0.198 4.198 12 C 0.105 3.895 13 C -0.496 4.496 14 H 0.098 0.902 15 C -0.142 4.142 16 N -0.412 5.412 17 Si 0.729 3.271 18 H -0.184 1.184 19 H -0.196 1.196 20 H -0.200 1.200 21 H 0.077 0.923 22 H 0.071 0.929 23 H 0.073 0.927 24 H 0.087 0.913 25 H 0.095 0.905 26 H 0.074 0.926 27 H 0.112 0.888 28 H 0.087 0.913 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.139 0.861 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.969 -2.768 -4.085 5.758 hybrid contribution 0.299 1.016 0.765 1.307 sum -2.669 -1.751 -3.319 4.606 Atomic orbital electron populations 1.21691 0.95004 1.00990 1.02329 1.19787 0.95545 0.89568 1.02389 1.22012 1.02256 0.96418 0.90335 1.76320 1.18291 0.91650 1.24148 1.47536 1.57412 1.09834 1.03585 1.21722 1.00910 0.87041 0.92808 1.19279 1.05855 0.96424 0.83418 1.18458 1.08903 0.93674 0.93947 1.19787 1.12302 0.98945 0.90238 1.20498 1.00501 0.94421 0.96965 1.20898 1.07408 0.96836 0.94646 1.16728 0.91995 0.90762 0.90045 1.19500 1.25820 1.00587 1.03651 0.90214 1.25831 0.93713 1.00482 0.94139 1.69834 1.19603 1.37331 1.14432 0.86313 0.78755 0.82331 0.79702 1.18430 1.19564 1.19963 0.92325 0.92855 0.92690 0.91273 0.90476 0.92637 0.88809 0.91275 0.88989 0.89027 0.86125 0.90809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.89 37.16 0.37 -1.65 16 2 C -0.03 -0.54 6.50 -27.89 -0.18 -0.73 16 3 C 0.06 1.34 6.50 -81.98 -0.53 0.81 16 4 N -0.29 -6.47 12.45 33.93 0.42 -6.04 16 5 N -0.40 -9.24 4.05 -65.11 -0.26 -9.51 16 6 C 0.12 2.23 10.17 59.84 0.61 2.84 16 7 C 0.06 1.66 6.83 -83.76 -0.57 1.09 16 8 C -0.14 -3.43 6.11 -106.99 -0.65 -4.08 16 9 C -0.19 -4.36 10.11 -38.86 -0.39 -4.75 16 10 C -0.10 -2.45 9.98 -39.72 -0.40 -2.85 16 11 C -0.18 -4.52 8.67 -38.78 -0.34 -4.86 16 12 C 0.11 2.91 5.56 -106.75 -0.59 2.31 16 13 C -0.47 -11.85 7.94 -37.92 -0.30 -12.15 16 14 H 0.08 1.91 5.73 -52.49 -0.30 1.61 16 15 C 0.08 1.86 5.13 -17.32 -0.09 1.77 16 16 N -0.79 -19.83 11.04 55.55 0.61 -19.21 16 17 Si 0.90 17.99 29.59 -169.99 -5.03 12.96 16 18 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 19 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 20 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 21 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 22 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 25 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.09 1.82 6.23 -51.93 -0.32 1.50 16 28 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 30 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 31 H 0.12 3.18 6.25 -52.48 -0.33 2.85 16 32 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 LS Contribution 271.47 15.07 4.09 4.09 Total: -1.00 -28.91 271.47 -7.13 -36.05 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -3.89 Total: 3.91 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: -3.07 Total: -22.24 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: 0.77 Total: -34.76 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.96 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -28.91 -7.13 -36.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260639375.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.996 kcal (2) G-P(sol) polarization free energy of solvation -28.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds