Wall clock time and date at job start Mon Mar 30 2020 03:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50694 * 109.47150 * 2 1 4 4 N 1.30232 * 125.74879 * 270.02134 * 3 2 1 5 5 N 1.40019 * 109.64158 * 179.97438 * 4 3 2 6 6 C 1.46496 * 125.89576 * 179.97438 * 5 4 3 7 7 C 1.36392 * 108.20345 * 0.02562 * 5 4 3 8 8 C 1.40412 * 106.80826 * 0.02562 * 7 5 4 9 9 C 1.40346 * 119.73895 * 179.97438 * 8 7 5 10 10 C 1.38047 * 120.27061 * 0.27429 * 9 8 7 11 11 C 1.38044 * 120.84780 * 359.46754 * 10 9 8 12 12 C 1.40551 * 120.28812 * 0.52022 * 11 10 9 13 13 C 1.40899 * 120.32235 * 179.72549 * 12 11 10 14 14 H 1.07996 * 119.99983 * 206.11588 * 13 12 11 15 15 C 1.39982 * 119.99898 * 26.12423 * 13 12 11 16 16 N 1.30831 * 120.00014 * 17.50328 * 15 13 12 17 17 Si 1.86798 * 119.99673 * 197.50638 * 15 13 12 18 18 H 1.48494 * 109.47362 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47245 * 119.99985 * 17 15 13 20 20 H 1.48498 * 109.46959 * 239.99391 * 17 15 13 21 21 H 1.08996 * 109.47062 * 300.00515 * 1 2 3 22 22 H 1.09005 * 109.47169 * 59.99989 * 1 2 3 23 23 H 1.09001 * 109.47233 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46771 * 239.99601 * 2 1 3 25 25 H 1.09003 * 109.46692 * 119.99840 * 2 1 3 26 26 H 1.09000 * 109.46910 * 95.83097 * 6 5 4 27 27 H 1.09003 * 109.47136 * 215.81963 * 6 5 4 28 28 H 1.09000 * 109.47517 * 335.82416 * 6 5 4 29 29 H 1.07997 * 119.86327 * 180.02562 * 9 8 7 30 30 H 1.07998 * 119.57352 * 179.72586 * 10 9 8 31 31 H 1.08004 * 119.85322 * 180.26661 * 11 10 9 32 32 H 0.97005 * 120.00057 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2856 2.1382 -1.0569 5 7 2.7336 3.4067 -0.6685 6 6 3.1184 4.4951 -1.5703 7 6 2.7509 3.4535 0.6945 8 6 2.3095 2.2006 1.1494 9 6 2.2230 1.9513 2.5279 10 6 2.5644 2.9339 3.4355 11 6 3.0055 4.1701 3.0078 12 6 3.1036 4.4515 1.6343 13 6 3.5482 5.7150 1.1970 14 1 3.2432 6.0903 0.2314 15 6 4.3854 6.4837 2.0142 16 7 5.0291 5.9211 3.0046 17 14 4.5835 8.3127 1.6905 18 1 3.7554 8.7010 0.5207 19 1 4.1432 9.0773 2.8850 20 1 6.0100 8.6138 1.4084 21 1 -0.3633 0.5139 0.8899 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.2713 5.1662 -1.7120 27 1 3.9516 5.0485 -1.1371 28 1 3.4187 4.0806 -2.5327 29 1 1.8842 0.9882 2.8800 30 1 2.4894 2.7314 4.4936 31 1 3.2725 4.9257 3.7320 32 1 5.6090 6.4538 3.5711 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260639375.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:18 Heat of formation + Delta-G solvation = 53.061225 kcal Electronic energy + Delta-G solvation = -15700.335595 eV Core-core repulsion = 13239.805731 eV Total energy + Delta-G solvation = -2460.529864 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.97361 -37.77447 -35.91139 -35.05061 -32.52986 -31.13248 -30.17888 -27.98477 -26.32392 -24.27086 -23.21797 -22.27058 -20.40731 -18.92984 -17.48045 -17.30776 -16.48986 -16.23662 -15.56478 -15.16679 -14.89353 -14.60417 -14.34299 -13.96805 -13.46471 -13.40216 -13.14173 -12.82953 -12.80121 -12.39683 -12.21249 -12.02536 -11.95702 -11.73585 -11.44858 -11.19197 -11.06901 -10.32149 -9.11952 -8.75571 -8.51822 -6.20313 0.46678 1.12118 1.37774 1.41565 1.52629 1.82243 1.90527 2.19480 2.77399 3.64555 3.74147 4.02064 4.24542 4.31560 4.46652 4.55103 4.62557 4.66598 4.73284 4.83093 4.88975 5.07417 5.08709 5.18082 5.31432 5.39467 5.45018 5.54716 5.85274 6.03205 6.19922 6.28025 6.42858 6.65957 6.82357 6.90812 7.10728 8.33734 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.035615 B = 0.008574 C = 0.007193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.990786 B = 3265.091655 C = 3891.573558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.034 4.034 3 C 0.068 3.932 4 N -0.297 5.297 5 N -0.408 5.408 6 C 0.113 3.887 7 C 0.036 3.964 8 C -0.167 4.167 9 C -0.183 4.183 10 C -0.115 4.115 11 C -0.198 4.198 12 C 0.080 3.920 13 C -0.492 4.492 14 H 0.085 0.915 15 C 0.037 3.963 16 N -0.821 5.821 17 Si 0.978 3.022 18 H -0.256 1.256 19 H -0.266 1.266 20 H -0.267 1.267 21 H 0.047 0.953 22 H 0.043 0.957 23 H 0.090 0.910 24 H 0.086 0.914 25 H 0.093 0.907 26 H 0.067 0.933 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.126 0.874 30 H 0.118 0.882 31 H 0.106 0.894 32 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.793 -3.803 -3.421 6.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.073 4.073 3 C -0.105 4.105 4 N -0.114 5.114 5 N -0.197 5.197 6 C -0.028 4.028 7 C -0.079 4.079 8 C -0.174 4.174 9 C -0.205 4.205 10 C -0.135 4.135 11 C -0.221 4.221 12 C 0.075 3.925 13 C -0.522 4.522 14 H 0.103 0.897 15 C -0.178 4.178 16 N -0.447 5.447 17 Si 0.799 3.201 18 H -0.179 1.179 19 H -0.191 1.191 20 H -0.192 1.192 21 H 0.066 0.934 22 H 0.063 0.937 23 H 0.109 0.891 24 H 0.105 0.895 25 H 0.111 0.889 26 H 0.085 0.915 27 H 0.102 0.898 28 H 0.113 0.887 29 H 0.143 0.857 30 H 0.136 0.864 31 H 0.124 0.876 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.545 -3.574 -4.654 6.856 hybrid contribution 0.452 1.142 0.930 1.540 sum -3.093 -2.432 -3.724 5.418 Atomic orbital electron populations 1.21653 0.93288 1.03070 1.01346 1.20038 0.96871 0.86374 1.04039 1.22804 1.00602 0.98236 0.88883 1.76295 1.18801 0.91581 1.24708 1.47875 1.57693 1.10776 1.03320 1.21884 1.01067 0.86619 0.93200 1.19560 1.06571 0.97116 0.84664 1.18953 1.09291 0.93911 0.95292 1.20168 1.10574 0.99970 0.89748 1.20779 1.00281 0.93796 0.98618 1.20938 1.08894 0.97777 0.94475 1.17067 0.92947 0.91761 0.90703 1.19761 1.26798 1.01119 1.04498 0.89727 1.26676 0.92807 1.04770 0.93575 1.69890 1.20219 1.39203 1.15384 0.85215 0.78926 0.76325 0.79664 1.17887 1.19077 1.19175 0.93429 0.93732 0.89073 0.89545 0.88888 0.91495 0.89786 0.88664 0.85659 0.86442 0.87605 0.90110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 9.89 71.98 0.71 -2.70 16 2 C -0.03 -1.00 6.50 29.85 0.19 -0.81 16 3 C 0.07 2.83 6.50 43.63 0.28 3.11 16 4 N -0.30 -13.12 12.45 -46.56 -0.58 -13.70 16 5 N -0.41 -19.11 4.05 -359.90 -1.46 -20.57 16 6 C 0.11 4.30 10.17 127.77 1.30 5.60 16 7 C 0.04 1.87 6.83 39.78 0.27 2.14 16 8 C -0.17 -7.94 6.11 -21.40 -0.13 -8.07 16 9 C -0.18 -8.14 10.11 22.74 0.23 -7.91 16 10 C -0.12 -5.41 9.98 22.18 0.22 -5.18 16 11 C -0.20 -10.52 8.67 22.79 0.20 -10.32 16 12 C 0.08 4.37 5.56 -21.25 -0.12 4.25 16 13 C -0.49 -25.72 7.94 23.34 0.19 -25.53 16 14 H 0.08 4.16 5.73 -2.91 -0.02 4.14 16 15 C 0.04 1.82 5.13 85.26 0.44 2.25 16 16 N -0.82 -42.37 11.04 21.83 0.24 -42.13 16 17 Si 0.98 37.07 29.59 68.60 2.03 39.10 16 18 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 19 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 20 H -0.27 -9.73 7.11 99.48 0.71 -9.02 16 21 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 22 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 23 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 25 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 26 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.08 3.33 6.23 -2.39 -0.01 3.31 16 28 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 29 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16 30 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16 31 H 0.11 5.81 6.25 -2.91 -0.02 5.79 16 32 H 0.29 13.40 8.30 -92.70 -0.77 12.63 16 Total: -1.00 -63.10 271.47 5.14 -57.96 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: 1.12 Total: 22.51 kcal Atomic # 6 Polarization: -46.96 SS G_CDS: 3.78 Total: -43.17 kcal Atomic # 7 Polarization: -74.61 SS G_CDS: -1.80 Total: -76.41 kcal Atomic # 14 Polarization: 37.07 SS G_CDS: 2.03 Total: 39.10 kcal Total: -63.10 5.14 -57.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260639375.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.022 kcal (2) G-P(sol) polarization free energy of solvation -63.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds