Wall clock time and date at job start Mon Mar 30 2020 02:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42900 * 109.47324 * 2 1 4 4 C 1.42891 * 114.00359 * 185.75817 * 3 2 1 5 5 C 1.50705 * 109.96873 * 306.08196 * 4 3 2 6 6 H 1.07998 * 119.99980 * 124.69282 * 5 4 3 7 7 C 1.37874 * 119.99720 * 304.68757 * 5 4 3 8 8 N 1.31514 * 119.99848 * 174.86339 * 7 5 4 9 9 Si 1.86804 * 120.00304 * 354.86577 * 7 5 4 10 10 H 1.48502 * 109.46738 * 275.35353 * 9 7 5 11 11 H 1.48492 * 109.47006 * 35.34784 * 9 7 5 12 12 H 1.48495 * 109.47052 * 155.35294 * 9 7 5 13 13 C 1.51598 * 110.06683 * 184.76109 * 4 3 2 14 14 C 1.52977 * 109.40868 * 343.33348 * 13 4 3 15 15 C 1.53781 * 115.51667 * 318.18744 * 14 13 4 16 16 S 1.79967 * 113.13091 * 315.97303 * 15 14 13 17 17 C 1.83627 * 102.84854 * 86.69763 * 16 15 14 18 18 C 1.45390 * 109.69388 * 291.07440 * 17 16 15 19 19 H 1.09000 * 109.46794 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.47160 * 300.00251 * 1 2 3 21 21 H 1.08996 * 109.46729 * 60.00195 * 1 2 3 22 22 H 1.08995 * 109.47559 * 239.99544 * 2 1 3 23 23 H 1.09004 * 109.46871 * 119.99540 * 2 1 3 24 24 H 0.97001 * 120.00224 * 179.97438 * 8 7 5 25 25 H 1.08992 * 109.48052 * 103.31630 * 13 4 3 26 26 H 1.08999 * 109.48110 * 223.35351 * 13 4 3 27 27 H 1.08999 * 108.27237 * 196.62367 * 14 13 4 28 28 H 1.08998 * 108.12908 * 79.64690 * 14 13 4 29 29 H 1.09001 * 108.75544 * 195.02644 * 15 14 13 30 30 H 1.09004 * 108.65162 * 76.84379 * 15 14 13 31 31 H 1.08991 * 109.43623 * 171.00124 * 17 16 15 32 32 H 1.08998 * 109.43444 * 51.13552 * 17 16 15 33 33 H 1.08999 * 108.30766 * 303.20638 * 18 17 16 34 34 H 1.09006 * 108.16379 * 186.13669 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4246 1.4623 -0.1310 5 6 4.1080 0.6344 0.9268 6 1 4.8324 -0.1143 0.6421 7 6 3.8085 0.8331 2.2578 8 7 4.3275 0.0444 3.1734 9 14 2.6655 2.2223 2.7609 10 1 3.4425 3.4815 2.8870 11 1 1.6104 2.3930 1.7301 12 1 2.0351 1.8968 4.0654 13 6 3.8428 2.9139 -0.0031 14 6 2.6200 3.8136 -0.1917 15 6 1.6612 3.4002 -1.3207 16 16 2.5127 2.9319 -2.8354 17 6 2.8652 1.1493 -2.5713 18 6 3.8614 0.9968 -1.5234 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3632 0.5138 -0.8900 22 1 1.8934 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 4.1172 0.1843 4.1099 25 1 4.2699 3.0834 0.9852 26 1 4.5863 3.1465 -0.7655 27 1 2.9688 4.8264 -0.3933 28 1 2.0609 3.8266 0.7439 29 1 0.9943 4.2348 -1.5373 30 1 1.0640 2.5549 -0.9788 31 1 3.2421 0.7132 -3.4963 32 1 1.9485 0.6380 -2.2773 33 1 4.7491 1.5606 -1.8102 34 1 4.1321 -0.0574 -1.4627 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260663073.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:42 Heat of formation + Delta-G solvation = -34.803227 kcal Electronic energy + Delta-G solvation = -16031.500151 eV Core-core repulsion = 13670.311399 eV Total energy + Delta-G solvation = -2361.188752 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.85574 -34.16942 -32.55332 -32.43765 -30.33681 -28.63821 -25.40325 -23.25607 -22.18600 -20.88226 -19.12277 -17.01433 -16.03771 -15.70694 -15.08251 -14.82865 -14.34133 -13.47789 -13.28521 -12.91298 -12.79845 -12.52801 -12.24971 -11.76490 -11.71126 -11.18516 -11.11835 -10.92473 -10.52256 -10.38394 -10.25854 -9.99463 -9.85164 -9.60049 -9.02588 -8.71596 -8.65396 -7.93144 -7.13641 -6.18131 -4.26579 2.38607 3.15847 3.32549 3.43447 3.60177 4.44353 4.74013 5.19029 5.34808 5.53962 5.65390 5.69159 5.74426 5.84712 5.91946 6.02659 6.13657 6.28724 6.31015 6.34681 6.46219 6.54221 6.61090 6.65632 6.81677 6.92883 6.96087 7.03433 7.41764 7.61386 8.10986 8.62056 8.83276 9.45530 10.91608 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.028725 B = 0.013817 C = 0.013006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.512402 B = 2026.043893 C = 2152.255489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.058 3.942 3 O -0.383 6.383 4 C 0.211 3.789 5 C -0.543 4.543 6 H 0.074 0.926 7 C 0.087 3.913 8 N -0.890 5.890 9 Si 0.860 3.140 10 H -0.284 1.284 11 H -0.208 1.208 12 H -0.305 1.305 13 C -0.109 4.109 14 C -0.108 4.108 15 C -0.077 4.077 16 S -0.304 6.304 17 C -0.051 4.051 18 C -0.140 4.140 19 H 0.058 0.942 20 H 0.055 0.945 21 H 0.049 0.951 22 H 0.035 0.965 23 H 0.062 0.938 24 H 0.265 0.735 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.042 0.958 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.120 0.880 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.946 3.104 -7.661 10.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.018 4.018 3 O -0.304 6.304 4 C 0.173 3.827 5 C -0.580 4.580 6 H 0.092 0.908 7 C -0.118 4.118 8 N -0.527 5.527 9 Si 0.688 3.312 10 H -0.211 1.211 11 H -0.130 1.130 12 H -0.233 1.233 13 C -0.147 4.147 14 C -0.148 4.148 15 C -0.224 4.224 16 S -0.078 6.078 17 C -0.199 4.199 18 C -0.179 4.179 19 H 0.077 0.923 20 H 0.074 0.926 21 H 0.068 0.932 22 H 0.053 0.947 23 H 0.080 0.920 24 H 0.074 0.926 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.061 0.939 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.138 0.862 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.821 3.853 -8.373 10.901 hybrid contribution -0.452 -0.279 1.549 1.637 sum -6.273 3.574 -6.824 9.934 Atomic orbital electron populations 1.21817 0.96256 1.00988 1.01700 1.22101 0.92230 0.86675 1.00834 1.87980 1.24131 1.24527 1.93752 1.19103 0.79071 0.93025 0.91516 1.21250 1.25528 1.21146 0.90062 0.90759 1.24937 0.94864 0.95655 0.96320 1.69943 1.43925 1.37510 1.01293 0.87437 0.83772 0.82033 0.77923 1.21115 1.13041 1.23349 1.21860 0.96432 0.94443 1.01952 1.21746 0.96910 0.98269 0.97858 1.23552 0.99938 1.05069 0.93855 1.86237 1.78840 1.14798 1.27970 1.22264 1.03278 0.92698 1.01629 1.21091 0.98447 1.02458 0.95926 0.92293 0.92632 0.93157 0.94691 0.91958 0.92569 0.91278 0.91297 0.93931 0.91820 0.90579 0.86193 0.89480 0.89688 0.91621 0.91725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 10.28 37.16 0.38 -1.98 16 2 C 0.06 1.12 5.22 37.16 0.19 1.31 16 3 O -0.38 -7.82 1.76 -35.23 -0.06 -7.88 16 4 C 0.21 4.55 0.25 -92.39 -0.02 4.52 16 5 C -0.54 -14.17 7.17 -34.44 -0.25 -14.41 16 6 H 0.07 2.14 7.81 -52.49 -0.41 1.73 16 7 C 0.09 2.37 4.94 -17.82 -0.09 2.28 16 8 N -0.89 -26.25 13.96 55.43 0.77 -25.47 16 9 Si 0.86 20.83 22.73 -169.99 -3.86 16.97 16 10 H -0.28 -6.89 6.90 56.52 0.39 -6.50 16 11 H -0.21 -4.67 4.12 56.52 0.23 -4.44 16 12 H -0.31 -7.68 7.11 56.52 0.40 -7.27 16 13 C -0.11 -2.28 4.18 -27.45 -0.11 -2.40 16 14 C -0.11 -2.04 4.98 -26.34 -0.13 -2.17 16 15 C -0.08 -1.33 5.55 37.56 0.21 -1.12 16 16 S -0.30 -5.23 21.56 -107.50 -2.32 -7.55 16 17 C -0.05 -0.86 5.71 33.58 0.19 -0.67 16 18 C -0.14 -2.68 3.72 -30.22 -0.11 -2.79 16 19 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 20 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 21 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 22 H 0.03 0.64 5.92 -51.93 -0.31 0.33 16 23 H 0.06 1.39 6.93 -51.93 -0.36 1.03 16 24 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.07 1.59 5.24 -51.93 -0.27 1.31 16 26 H 0.07 1.38 6.84 -51.93 -0.36 1.02 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 1.25 4.92 -51.93 -0.26 1.00 16 29 H 0.08 1.19 8.14 -51.70 -0.42 0.77 16 30 H 0.12 2.20 5.41 -51.70 -0.28 1.92 16 31 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 32 H 0.08 1.41 5.43 -51.93 -0.28 1.13 16 33 H 0.07 1.25 6.99 -51.93 -0.36 0.89 16 34 H 0.06 1.27 7.58 -51.93 -0.39 0.88 16 LS Contribution 250.38 15.07 3.77 3.77 Total: -1.00 -27.81 250.38 -6.57 -34.37 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -5.13 Total: 3.22 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: 0.26 Total: -17.43 kcal Atomic # 7 Polarization: -26.25 SS G_CDS: 0.77 Total: -25.47 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: -0.06 Total: -7.88 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -3.86 Total: 16.97 kcal Atomic # 16 Polarization: -5.23 SS G_CDS: -2.32 Total: -7.55 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -27.81 -6.57 -34.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260663073.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.432 kcal (2) G-P(sol) polarization free energy of solvation -27.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds