Wall clock time and date at job start Mon Mar 30 2020 02:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42900 * 109.47324 * 2 1 4 4 C 1.42891 * 114.00359 * 185.75817 * 3 2 1 5 5 C 1.50705 * 109.96873 * 306.08196 * 4 3 2 6 6 H 1.07998 * 119.99980 * 124.69282 * 5 4 3 7 7 C 1.37874 * 119.99720 * 304.68757 * 5 4 3 8 8 N 1.31514 * 119.99848 * 174.86339 * 7 5 4 9 9 Si 1.86804 * 120.00304 * 354.86577 * 7 5 4 10 10 H 1.48502 * 109.46738 * 275.35353 * 9 7 5 11 11 H 1.48492 * 109.47006 * 35.34784 * 9 7 5 12 12 H 1.48495 * 109.47052 * 155.35294 * 9 7 5 13 13 C 1.51598 * 110.06683 * 184.76109 * 4 3 2 14 14 C 1.52977 * 109.40868 * 343.33348 * 13 4 3 15 15 C 1.53781 * 115.51667 * 318.18744 * 14 13 4 16 16 S 1.79967 * 113.13091 * 315.97303 * 15 14 13 17 17 C 1.83627 * 102.84854 * 86.69763 * 16 15 14 18 18 C 1.45390 * 109.69388 * 291.07440 * 17 16 15 19 19 H 1.09000 * 109.46794 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.47160 * 300.00251 * 1 2 3 21 21 H 1.08996 * 109.46729 * 60.00195 * 1 2 3 22 22 H 1.08995 * 109.47559 * 239.99544 * 2 1 3 23 23 H 1.09004 * 109.46871 * 119.99540 * 2 1 3 24 24 H 0.97001 * 120.00224 * 179.97438 * 8 7 5 25 25 H 1.08992 * 109.48052 * 103.31630 * 13 4 3 26 26 H 1.08999 * 109.48110 * 223.35351 * 13 4 3 27 27 H 1.08999 * 108.27237 * 196.62367 * 14 13 4 28 28 H 1.08998 * 108.12908 * 79.64690 * 14 13 4 29 29 H 1.09001 * 108.75544 * 195.02644 * 15 14 13 30 30 H 1.09004 * 108.65162 * 76.84379 * 15 14 13 31 31 H 1.08991 * 109.43623 * 171.00124 * 17 16 15 32 32 H 1.08998 * 109.43444 * 51.13552 * 17 16 15 33 33 H 1.08999 * 108.30766 * 303.20638 * 18 17 16 34 34 H 1.09006 * 108.16379 * 186.13669 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4246 1.4623 -0.1310 5 6 4.1080 0.6344 0.9268 6 1 4.8324 -0.1143 0.6421 7 6 3.8085 0.8331 2.2578 8 7 4.3275 0.0444 3.1734 9 14 2.6655 2.2223 2.7609 10 1 3.4425 3.4815 2.8870 11 1 1.6104 2.3930 1.7301 12 1 2.0351 1.8968 4.0654 13 6 3.8428 2.9139 -0.0031 14 6 2.6200 3.8136 -0.1917 15 6 1.6612 3.4002 -1.3207 16 16 2.5127 2.9319 -2.8354 17 6 2.8652 1.1493 -2.5713 18 6 3.8614 0.9968 -1.5234 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3632 0.5138 -0.8900 22 1 1.8934 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 4.1172 0.1843 4.1099 25 1 4.2699 3.0834 0.9852 26 1 4.5863 3.1465 -0.7655 27 1 2.9688 4.8264 -0.3933 28 1 2.0609 3.8266 0.7439 29 1 0.9943 4.2348 -1.5373 30 1 1.0640 2.5549 -0.9788 31 1 3.2421 0.7132 -3.4963 32 1 1.9485 0.6380 -2.2773 33 1 4.7491 1.5606 -1.8102 34 1 4.1321 -0.0574 -1.4627 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260663073.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:42 Heat of formation + Delta-G solvation = -51.301063 kcal Electronic energy + Delta-G solvation = -16032.215550 eV Core-core repulsion = 13670.311399 eV Total energy + Delta-G solvation = -2361.904152 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.52183 -35.73985 -34.56489 -33.96846 -31.81105 -30.27200 -27.18342 -24.91919 -23.65938 -22.38978 -20.82297 -18.99419 -17.70298 -17.17625 -16.62257 -16.53122 -15.92652 -15.10321 -14.88953 -14.71983 -14.32702 -14.00647 -13.90773 -13.28742 -13.13104 -12.76987 -12.65785 -12.49067 -12.15353 -12.11194 -11.88040 -11.71977 -11.48738 -11.32095 -10.82349 -10.55376 -10.29264 -9.65818 -8.47735 -8.33391 -6.43525 1.05204 1.36275 1.42821 1.64372 1.81430 2.40119 2.97680 3.27897 3.91012 4.08584 4.22831 4.28603 4.34655 4.37441 4.49496 4.58074 4.76622 4.78481 4.84071 4.92462 5.00810 5.06157 5.11562 5.25833 5.27673 5.34309 5.40834 5.45174 5.66577 5.80446 6.05707 6.64925 6.83994 7.32559 8.79954 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.028725 B = 0.013817 C = 0.013006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.512402 B = 2026.043893 C = 2152.255489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.055 3.945 3 O -0.377 6.377 4 C 0.211 3.789 5 C -0.535 4.535 6 H 0.033 0.967 7 C 0.038 3.962 8 N -0.941 5.941 9 Si 0.911 3.089 10 H -0.283 1.283 11 H -0.177 1.177 12 H -0.319 1.319 13 C -0.111 4.111 14 C -0.108 4.108 15 C -0.076 4.076 16 S -0.296 6.296 17 C -0.050 4.050 18 C -0.132 4.132 19 H 0.080 0.920 20 H 0.050 0.950 21 H 0.069 0.931 22 H 0.045 0.955 23 H 0.022 0.978 24 H 0.263 0.737 25 H 0.044 0.956 26 H 0.077 0.923 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.100 0.900 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.857 4.533 -9.657 13.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.022 4.022 3 O -0.298 6.298 4 C 0.173 3.827 5 C -0.572 4.572 6 H 0.052 0.948 7 C -0.161 4.161 8 N -0.580 5.580 9 Si 0.738 3.262 10 H -0.209 1.209 11 H -0.099 1.099 12 H -0.248 1.248 13 C -0.149 4.149 14 C -0.147 4.147 15 C -0.224 4.224 16 S -0.070 6.070 17 C -0.197 4.197 18 C -0.171 4.171 19 H 0.098 0.902 20 H 0.069 0.931 21 H 0.088 0.912 22 H 0.063 0.937 23 H 0.041 0.959 24 H 0.072 0.928 25 H 0.063 0.937 26 H 0.096 0.904 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.118 0.882 30 H 0.132 0.868 31 H 0.129 0.871 32 H 0.108 0.892 33 H 0.083 0.917 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.739 5.290 -10.401 14.002 hybrid contribution 0.231 -0.804 2.121 2.280 sum -7.507 4.486 -8.280 12.043 Atomic orbital electron populations 1.21775 0.92964 1.02740 1.02415 1.22212 0.94853 0.85696 0.99421 1.87966 1.22806 1.25269 1.93733 1.18964 0.79345 0.92915 0.91468 1.21510 1.24249 1.20160 0.91323 0.94838 1.25649 0.96394 0.97622 0.96463 1.70079 1.46509 1.39870 1.01569 0.86698 0.82794 0.79249 0.77505 1.20949 1.09869 1.24827 1.21788 0.97879 0.94325 1.00868 1.21710 0.95995 0.98687 0.98311 1.23524 0.99670 1.05775 0.93405 1.86274 1.78740 1.14550 1.27404 1.22238 1.02638 0.93155 1.01673 1.20953 0.99297 1.01554 0.95276 0.90162 0.93085 0.91168 0.93720 0.95943 0.92849 0.93732 0.90445 0.92041 0.92558 0.88166 0.86827 0.87058 0.89243 0.91662 0.92986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.01 10.28 71.98 0.74 -3.27 16 2 C 0.05 2.02 5.22 71.98 0.38 2.40 16 3 O -0.38 -14.65 1.76 -148.98 -0.26 -14.92 16 4 C 0.21 8.94 0.25 -11.94 0.00 8.94 16 5 C -0.53 -28.68 7.17 25.60 0.18 -28.50 16 6 H 0.03 2.02 7.81 -2.91 -0.02 2.00 16 7 C 0.04 2.13 4.94 84.65 0.42 2.55 16 8 N -0.94 -57.83 13.96 21.45 0.30 -57.53 16 9 Si 0.91 43.35 22.73 68.60 1.56 44.91 16 10 H -0.28 -13.31 6.90 99.48 0.69 -12.62 16 11 H -0.18 -7.50 4.12 99.48 0.41 -7.09 16 12 H -0.32 -15.84 7.11 99.48 0.71 -15.13 16 13 C -0.11 -4.46 4.18 30.13 0.13 -4.33 16 14 C -0.11 -3.70 4.98 30.85 0.15 -3.54 16 15 C -0.08 -2.33 5.55 72.25 0.40 -1.93 16 16 S -0.30 -9.02 21.56 -56.49 -1.22 -10.23 16 17 C -0.05 -1.51 5.71 69.66 0.40 -1.11 16 18 C -0.13 -4.84 3.72 28.33 0.11 -4.74 16 19 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 20 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 21 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 22 H 0.04 1.56 5.92 -2.39 -0.01 1.54 16 23 H 0.02 1.01 6.93 -2.38 -0.02 0.99 16 24 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 25 H 0.04 2.01 5.24 -2.39 -0.01 1.99 16 26 H 0.08 2.95 6.84 -2.39 -0.02 2.93 16 27 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.06 2.02 4.92 -2.39 -0.01 2.01 16 29 H 0.10 2.64 8.14 -2.53 -0.02 2.62 16 30 H 0.11 3.67 5.41 -2.55 -0.01 3.66 16 31 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 32 H 0.09 2.66 5.43 -2.39 -0.01 2.64 16 33 H 0.06 2.39 6.99 -2.39 -0.02 2.37 16 34 H 0.05 2.03 7.58 -2.38 -0.02 2.01 16 Total: -1.00 -60.95 250.38 4.04 -56.92 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 0.76 Total: 14.40 kcal Atomic # 6 Polarization: -36.45 SS G_CDS: 2.90 Total: -33.55 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: 0.30 Total: -57.53 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.26 Total: -14.92 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 1.56 Total: 44.91 kcal Atomic # 16 Polarization: -9.02 SS G_CDS: -1.22 Total: -10.23 kcal Total: -60.95 4.04 -56.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260663073.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.617 kcal (2) G-P(sol) polarization free energy of solvation -60.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds