Wall clock time and date at job start Mon Mar 30 2020 02:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42897 * 109.47285 * 2 1 4 4 C 1.42903 * 114.00125 * 174.90385 * 3 2 1 5 5 H 1.08996 * 109.47004 * 355.55919 * 4 3 2 6 6 C 1.50697 * 109.47207 * 235.55861 * 4 3 2 7 7 H 1.07996 * 120.00034 * 245.19281 * 6 4 3 8 8 C 1.37878 * 119.99826 * 65.19447 * 6 4 3 9 9 N 1.31509 * 120.00115 * 5.19212 * 8 6 4 10 10 Si 1.86807 * 119.99817 * 185.19258 * 8 6 4 11 11 H 1.48499 * 109.47154 * 60.00076 * 10 8 6 12 12 H 1.48503 * 109.46761 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.46837 * 299.99812 * 10 8 6 14 14 C 1.53007 * 109.46725 * 115.56276 * 4 3 2 15 15 H 1.08994 * 109.30916 * 57.16098 * 14 4 3 16 16 C 1.52843 * 109.56906 * 297.34941 * 14 4 3 17 17 C 1.52586 * 110.79947 * 169.24305 * 16 14 4 18 18 C 1.53092 * 109.95451 * 70.68406 * 17 16 14 19 19 S 1.81747 * 108.84361 * 296.97502 * 18 17 16 20 20 C 1.53093 * 109.38662 * 176.91451 * 14 4 3 21 21 H 1.08996 * 109.46678 * 299.99336 * 1 2 3 22 22 H 1.08995 * 109.46929 * 59.99640 * 1 2 3 23 23 H 1.08996 * 109.47009 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47229 * 240.00385 * 2 1 3 25 25 H 1.09001 * 109.47512 * 120.00698 * 2 1 3 26 26 H 0.97006 * 120.00139 * 180.02562 * 9 8 6 27 27 H 1.08997 * 109.17786 * 48.90645 * 16 14 4 28 28 H 1.08998 * 109.19796 * 289.58960 * 16 14 4 29 29 H 1.09007 * 109.38634 * 310.53896 * 17 16 14 30 30 H 1.08994 * 109.30769 * 190.78485 * 17 16 14 31 31 H 1.09008 * 109.57324 * 177.16785 * 18 17 16 32 32 H 1.09004 * 109.68303 * 56.84727 * 18 17 16 33 33 H 1.09002 * 109.58104 * 63.36332 * 20 14 4 34 34 H 1.08997 * 109.57689 * 303.10752 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4261 1.4618 0.1160 5 1 3.8597 0.4725 0.2617 6 6 3.7648 2.3373 1.2948 7 1 4.2545 3.2872 1.1389 8 6 3.4496 1.9257 2.5724 9 7 2.9470 0.7269 2.7717 10 14 3.7363 3.0709 4.0201 11 1 2.9400 4.3107 3.8359 12 1 3.3192 2.3959 5.2753 13 1 5.1784 3.4161 4.1000 14 6 3.9935 2.0843 -1.1614 15 1 3.5209 3.0516 -1.3316 16 6 3.7085 1.1654 -2.3490 17 6 4.0207 1.8697 -3.6662 18 6 5.5344 2.0356 -3.8239 19 16 6.1500 3.1043 -2.4890 20 6 5.5042 2.2771 -1.0051 21 1 -0.3632 0.5137 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 2.7249 0.4374 3.6706 27 1 2.6569 0.8788 -2.3357 28 1 4.3249 0.2704 -2.2657 29 1 3.5464 2.8512 -3.6730 30 1 3.6336 1.2749 -4.4934 31 1 5.7530 2.4936 -4.7886 32 1 6.0187 1.0609 -3.7642 33 1 5.9863 1.3064 -0.8891 34 1 5.7051 2.8918 -0.1277 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260684624.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:53 Heat of formation + Delta-G solvation = -73.483611 kcal Electronic energy + Delta-G solvation = -14969.003529 eV Core-core repulsion = 12606.137470 eV Total energy + Delta-G solvation = -2362.866059 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -37.71723 -35.38990 -32.83737 -31.51643 -29.85436 -26.87391 -26.25263 -23.41799 -21.75506 -21.06079 -19.37727 -16.64714 -16.27961 -15.39499 -14.85886 -14.44259 -14.02291 -13.87738 -13.21867 -13.01164 -12.91356 -12.39261 -12.21625 -11.71289 -11.49085 -11.01971 -10.97349 -10.89672 -10.84742 -10.76698 -10.30602 -10.21140 -9.95734 -9.53743 -9.43537 -9.05369 -8.47133 -7.79935 -7.26034 -6.11833 -4.18214 2.23809 2.99985 3.29772 3.34080 3.38231 4.37545 4.97002 5.03681 5.13439 5.37590 5.47480 5.62349 5.72749 5.82872 5.91955 5.95705 6.06888 6.15511 6.25109 6.40214 6.41319 6.42284 6.61343 6.74606 6.81005 6.91292 6.95833 7.12837 7.37825 7.84090 8.22790 8.82560 9.01671 9.51231 10.96956 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.022856 B = 0.010211 C = 0.007392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.776143 B = 2741.502675 C = 3786.844187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.064 3.936 3 O -0.384 6.384 4 C 0.226 3.774 5 H 0.023 0.977 6 C -0.528 4.528 7 H 0.061 0.939 8 C 0.078 3.922 9 N -0.876 5.876 10 Si 0.892 3.108 11 H -0.275 1.275 12 H -0.287 1.287 13 H -0.276 1.276 14 C -0.092 4.092 15 H 0.075 0.925 16 C -0.125 4.125 17 C -0.119 4.119 18 C -0.076 4.076 19 S -0.305 6.305 20 C -0.048 4.048 21 H 0.057 0.943 22 H 0.046 0.954 23 H 0.051 0.949 24 H 0.012 0.988 25 H 0.065 0.935 26 H 0.262 0.738 27 H 0.072 0.928 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.211 -1.242 -8.909 9.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.014 4.014 3 O -0.304 6.304 4 C 0.168 3.832 5 H 0.041 0.959 6 C -0.566 4.566 7 H 0.079 0.921 8 C -0.126 4.126 9 N -0.513 5.513 10 Si 0.719 3.281 11 H -0.200 1.200 12 H -0.213 1.213 13 H -0.202 1.202 14 C -0.112 4.112 15 H 0.093 0.907 16 C -0.162 4.162 17 C -0.157 4.157 18 C -0.224 4.224 19 S -0.078 6.078 20 C -0.195 4.195 21 H 0.076 0.924 22 H 0.065 0.935 23 H 0.070 0.930 24 H 0.030 0.970 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.112 0.888 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.688 -0.272 -8.888 9.051 hybrid contribution -0.462 -0.782 0.948 1.313 sum 1.227 -1.054 -7.940 8.103 Atomic orbital electron populations 1.21682 0.96540 1.00147 1.01721 1.22256 0.93208 0.87028 0.98893 1.87926 1.24880 1.23612 1.93985 1.19607 0.78565 0.95705 0.89287 0.95901 1.21294 1.39157 1.05550 0.90584 0.92067 1.24987 0.93929 0.94735 0.98956 1.69872 1.42091 1.17420 1.21934 0.86671 0.78645 0.81267 0.81474 1.20028 1.21284 1.20153 1.21714 0.92955 1.00129 0.96437 0.90654 1.21658 1.02333 0.98411 0.93831 1.21708 0.93756 1.01919 0.98348 1.23345 0.98954 1.01285 0.98817 1.86629 1.72764 1.43408 1.04987 1.23529 0.98224 1.02643 0.95119 0.92383 0.93516 0.93042 0.97002 0.91665 0.92779 0.90907 0.92916 0.90874 0.91815 0.88800 0.90494 0.90739 0.86470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 10.28 37.16 0.38 -2.26 16 2 C 0.06 1.38 6.01 37.16 0.22 1.60 16 3 O -0.38 -9.53 9.15 -35.23 -0.32 -9.85 16 4 C 0.23 5.48 1.58 -27.88 -0.04 5.44 16 5 H 0.02 0.60 7.57 -51.93 -0.39 0.21 16 6 C -0.53 -14.08 7.86 -34.44 -0.27 -14.35 16 7 H 0.06 1.61 6.72 -52.49 -0.35 1.25 16 8 C 0.08 2.12 5.41 -17.82 -0.10 2.03 16 9 N -0.88 -24.28 11.99 55.43 0.66 -23.61 16 10 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 13 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 14 C -0.09 -1.87 1.83 -90.65 -0.17 -2.03 16 15 H 0.08 1.64 8.06 -51.93 -0.42 1.22 16 16 C -0.12 -2.15 4.90 -27.02 -0.13 -2.28 16 17 C -0.12 -1.70 5.75 -26.90 -0.15 -1.86 16 18 C -0.08 -1.05 6.45 37.20 0.24 -0.81 16 19 S -0.30 -5.17 22.33 -107.50 -2.40 -7.57 16 20 C -0.05 -0.90 5.48 37.21 0.20 -0.70 16 21 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 22 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 23 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.01 0.24 7.33 -51.93 -0.38 -0.14 16 25 H 0.07 1.57 7.01 -51.93 -0.36 1.21 16 26 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 27 H 0.07 1.31 6.42 -51.93 -0.33 0.98 16 28 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 29 H 0.07 1.10 8.06 -51.92 -0.42 0.68 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.09 1.12 8.14 -51.92 -0.42 0.70 16 32 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 34 H 0.12 2.40 6.43 -51.93 -0.33 2.07 16 LS Contribution 280.89 15.07 4.23 4.23 Total: -1.00 -27.62 280.89 -8.17 -35.79 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -5.51 Total: 0.24 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: 0.19 Total: -15.22 kcal Atomic # 7 Polarization: -24.28 SS G_CDS: 0.66 Total: -23.61 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: -0.32 Total: -9.85 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: -5.17 SS G_CDS: -2.40 Total: -7.57 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -27.62 -8.17 -35.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260684624.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.693 kcal (2) G-P(sol) polarization free energy of solvation -27.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds