Wall clock time and date at job start Mon Mar 30 2020 02:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42897 * 109.47285 * 2 1 4 4 C 1.42903 * 114.00125 * 174.90385 * 3 2 1 5 5 H 1.08996 * 109.47004 * 355.55919 * 4 3 2 6 6 C 1.50697 * 109.47207 * 235.55861 * 4 3 2 7 7 H 1.07996 * 120.00034 * 245.19281 * 6 4 3 8 8 C 1.37878 * 119.99826 * 65.19447 * 6 4 3 9 9 N 1.31509 * 120.00115 * 5.19212 * 8 6 4 10 10 Si 1.86807 * 119.99817 * 185.19258 * 8 6 4 11 11 H 1.48499 * 109.47154 * 60.00076 * 10 8 6 12 12 H 1.48503 * 109.46761 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.46837 * 299.99812 * 10 8 6 14 14 C 1.53007 * 109.46725 * 115.56276 * 4 3 2 15 15 H 1.08994 * 109.30916 * 57.16098 * 14 4 3 16 16 C 1.52843 * 109.56906 * 297.34941 * 14 4 3 17 17 C 1.52586 * 110.79947 * 169.24305 * 16 14 4 18 18 C 1.53092 * 109.95451 * 70.68406 * 17 16 14 19 19 S 1.81747 * 108.84361 * 296.97502 * 18 17 16 20 20 C 1.53093 * 109.38662 * 176.91451 * 14 4 3 21 21 H 1.08996 * 109.46678 * 299.99336 * 1 2 3 22 22 H 1.08995 * 109.46929 * 59.99640 * 1 2 3 23 23 H 1.08996 * 109.47009 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47229 * 240.00385 * 2 1 3 25 25 H 1.09001 * 109.47512 * 120.00698 * 2 1 3 26 26 H 0.97006 * 120.00139 * 180.02562 * 9 8 6 27 27 H 1.08997 * 109.17786 * 48.90645 * 16 14 4 28 28 H 1.08998 * 109.19796 * 289.58960 * 16 14 4 29 29 H 1.09007 * 109.38634 * 310.53896 * 17 16 14 30 30 H 1.08994 * 109.30769 * 190.78485 * 17 16 14 31 31 H 1.09008 * 109.57324 * 177.16785 * 18 17 16 32 32 H 1.09004 * 109.68303 * 56.84727 * 18 17 16 33 33 H 1.09002 * 109.58104 * 63.36332 * 20 14 4 34 34 H 1.08997 * 109.57689 * 303.10752 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4261 1.4618 0.1160 5 1 3.8597 0.4725 0.2617 6 6 3.7648 2.3373 1.2948 7 1 4.2545 3.2872 1.1389 8 6 3.4496 1.9257 2.5724 9 7 2.9470 0.7269 2.7717 10 14 3.7363 3.0709 4.0201 11 1 2.9400 4.3107 3.8359 12 1 3.3192 2.3959 5.2753 13 1 5.1784 3.4161 4.1000 14 6 3.9935 2.0843 -1.1614 15 1 3.5209 3.0516 -1.3316 16 6 3.7085 1.1654 -2.3490 17 6 4.0207 1.8697 -3.6662 18 6 5.5344 2.0356 -3.8239 19 16 6.1500 3.1043 -2.4890 20 6 5.5042 2.2771 -1.0051 21 1 -0.3632 0.5137 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 2.7249 0.4374 3.6706 27 1 2.6569 0.8788 -2.3357 28 1 4.3249 0.2704 -2.2657 29 1 3.5464 2.8512 -3.6730 30 1 3.6336 1.2749 -4.4934 31 1 5.7530 2.4936 -4.7886 32 1 6.0187 1.0609 -3.7642 33 1 5.9863 1.3064 -0.8891 34 1 5.7051 2.8918 -0.1277 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260684624.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:52 Heat of formation + Delta-G solvation = -88.469763 kcal Electronic energy + Delta-G solvation = -14969.653377 eV Core-core repulsion = 12606.137470 eV Total energy + Delta-G solvation = -2363.515908 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.42486 -36.95887 -34.74084 -33.13194 -31.46456 -28.45406 -27.95050 -25.13076 -23.38152 -22.55793 -20.98884 -18.63219 -17.77448 -17.15037 -16.50344 -16.20639 -15.52111 -15.34511 -14.96316 -14.49612 -14.32362 -13.88611 -13.66640 -13.29683 -13.23246 -12.80259 -12.71955 -12.52881 -12.31771 -12.20790 -12.03873 -11.80013 -11.68139 -11.26895 -11.15360 -10.59401 -10.49245 -9.64243 -8.62677 -8.17500 -6.30229 0.92009 1.39651 1.42042 1.48717 1.65256 2.39992 3.02710 3.64976 3.83208 3.90407 4.03851 4.24270 4.34902 4.36848 4.52126 4.60985 4.62604 4.71850 4.79476 4.89323 4.91923 5.00152 5.06945 5.17501 5.24469 5.31751 5.37848 5.42853 5.54996 5.77635 6.22741 6.76015 7.14336 7.41668 8.89795 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.022856 B = 0.010211 C = 0.007392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.776143 B = 2741.502675 C = 3786.844187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.061 3.939 3 O -0.405 6.405 4 C 0.228 3.772 5 H -0.003 1.003 6 C -0.547 4.547 7 H 0.057 0.943 8 C 0.031 3.969 9 N -0.900 5.900 10 Si 0.950 3.050 11 H -0.276 1.276 12 H -0.283 1.283 13 H -0.268 1.268 14 C -0.082 4.082 15 H 0.057 0.943 16 C -0.119 4.119 17 C -0.112 4.112 18 C -0.067 4.067 19 S -0.315 6.315 20 C -0.045 4.045 21 H 0.039 0.961 22 H 0.061 0.939 23 H 0.082 0.918 24 H 0.031 0.969 25 H 0.035 0.965 26 H 0.262 0.738 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.097 0.903 31 H 0.123 0.877 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.228 -1.289 -10.657 10.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.016 4.016 3 O -0.325 6.325 4 C 0.170 3.830 5 H 0.015 0.985 6 C -0.585 4.585 7 H 0.075 0.925 8 C -0.171 4.171 9 N -0.538 5.538 10 Si 0.775 3.225 11 H -0.202 1.202 12 H -0.208 1.208 13 H -0.193 1.193 14 C -0.103 4.103 15 H 0.075 0.925 16 C -0.157 4.157 17 C -0.150 4.150 18 C -0.215 4.215 19 S -0.088 6.088 20 C -0.193 4.193 21 H 0.058 0.942 22 H 0.080 0.920 23 H 0.101 0.899 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.115 0.885 31 H 0.142 0.858 32 H 0.108 0.892 33 H 0.092 0.908 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.710 -0.317 -10.641 10.782 hybrid contribution -0.468 -0.798 1.432 1.705 sum 1.242 -1.115 -9.209 9.359 Atomic orbital electron populations 1.21646 0.93850 1.02214 1.01532 1.22355 0.95395 0.85511 0.98341 1.87857 1.24938 1.25561 1.94120 1.19501 0.78533 0.94132 0.90792 0.98496 1.21641 1.39223 1.05672 0.91936 0.92519 1.25716 0.93966 0.96055 1.01373 1.69991 1.42986 1.18580 1.22254 0.85759 0.78776 0.79290 0.78662 1.20162 1.20799 1.19330 1.21524 0.93315 0.99461 0.95995 0.92469 1.21585 1.01909 0.98074 0.94137 1.21654 0.94203 1.01760 0.97415 1.23504 0.98369 1.01382 0.98246 1.86643 1.72753 1.44349 1.05020 1.23272 0.97525 1.02406 0.96105 0.94161 0.92016 0.89877 0.95050 0.94700 0.92888 0.91709 0.92520 0.91484 0.88459 0.85833 0.89161 0.90802 0.88802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.81 10.28 71.98 0.74 -4.07 16 2 C 0.06 2.65 6.01 71.98 0.43 3.09 16 3 O -0.40 -20.41 9.15 -148.98 -1.36 -21.78 16 4 C 0.23 11.38 1.58 29.85 0.05 11.43 16 5 H 0.00 -0.15 7.57 -2.39 -0.02 -0.17 16 6 C -0.55 -30.04 7.86 25.60 0.20 -29.84 16 7 H 0.06 3.08 6.72 -2.91 -0.02 3.06 16 8 C 0.03 1.70 5.41 84.66 0.46 2.16 16 9 N -0.90 -51.19 11.99 21.45 0.26 -50.93 16 10 Si 0.95 43.81 29.54 68.60 2.03 45.84 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 13 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 14 C -0.08 -3.37 1.83 -10.81 -0.02 -3.39 16 15 H 0.06 2.52 8.06 -2.39 -0.02 2.50 16 16 C -0.12 -3.95 4.90 30.40 0.15 -3.80 16 17 C -0.11 -2.84 5.75 30.49 0.18 -2.67 16 18 C -0.07 -1.62 6.45 72.01 0.46 -1.16 16 19 S -0.31 -10.19 22.33 -56.49 -1.26 -11.45 16 20 C -0.05 -1.73 5.48 72.01 0.39 -1.34 16 21 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 22 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 23 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 24 H 0.03 1.23 7.33 -2.38 -0.02 1.21 16 25 H 0.03 1.72 7.01 -2.39 -0.02 1.71 16 26 H 0.26 14.26 8.31 -92.70 -0.77 13.49 16 27 H 0.06 2.24 6.42 -2.39 -0.02 2.22 16 28 H 0.06 1.82 8.08 -2.39 -0.02 1.80 16 29 H 0.07 1.83 8.06 -2.38 -0.02 1.81 16 30 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.12 2.35 8.14 -2.38 -0.02 2.33 16 32 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 34 H 0.09 4.00 6.43 -2.39 -0.02 3.98 16 Total: -1.00 -60.44 280.89 3.76 -56.69 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 1.05 Total: 11.23 kcal Atomic # 6 Polarization: -32.63 SS G_CDS: 3.04 Total: -29.59 kcal Atomic # 7 Polarization: -51.19 SS G_CDS: 0.26 Total: -50.93 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -1.36 Total: -21.78 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: -10.19 SS G_CDS: -1.26 Total: -11.45 kcal Total: -60.44 3.76 -56.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260684624.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.780 kcal (2) G-P(sol) polarization free energy of solvation -60.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds