Wall clock time and date at job start Mon Mar 30 2020 02:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.46889 * 2 1 4 4 C 1.42905 * 113.99778 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47174 * 330.00433 * 4 3 2 6 6 C 1.50703 * 109.46880 * 90.00138 * 4 3 2 7 7 H 1.07992 * 120.00104 * 239.99654 * 6 4 3 8 8 C 1.37878 * 119.99764 * 60.00247 * 6 4 3 9 9 N 1.31520 * 119.99764 * 179.97438 * 8 6 4 10 10 Si 1.86802 * 120.00310 * 359.97438 * 8 6 4 11 11 H 1.48499 * 109.46980 * 90.00329 * 10 8 6 12 12 H 1.48498 * 109.47179 * 210.00263 * 10 8 6 13 13 H 1.48500 * 109.47181 * 330.00419 * 10 8 6 14 14 C 1.53004 * 109.46773 * 210.00101 * 4 3 2 15 15 H 1.08998 * 109.38941 * 300.19337 * 14 4 3 16 16 C 1.52579 * 109.38950 * 60.00497 * 14 4 3 17 17 C 1.52584 * 110.72162 * 190.81958 * 16 14 4 18 18 C 1.53095 * 109.95776 * 289.32135 * 17 16 14 19 19 S 1.81754 * 108.83954 * 63.02831 * 18 17 16 20 20 C 1.53099 * 109.38649 * 180.49687 * 14 4 3 21 21 H 1.09008 * 109.47201 * 60.00236 * 1 2 3 22 22 H 1.09001 * 109.47296 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47286 * 300.00017 * 1 2 3 24 24 H 1.08997 * 109.47286 * 239.99983 * 2 1 3 25 25 H 1.08997 * 109.46848 * 120.00081 * 2 1 3 26 26 H 0.97001 * 119.99831 * 179.97438 * 9 8 6 27 27 H 1.08998 * 109.22557 * 311.13953 * 16 14 4 28 28 H 1.08996 * 109.23015 * 70.50352 * 16 14 4 29 29 H 1.09004 * 109.39092 * 49.47608 * 17 16 14 30 30 H 1.09007 * 109.38603 * 169.17542 * 17 16 14 31 31 H 1.08997 * 109.57798 * 182.83221 * 18 17 16 32 32 H 1.08994 * 109.57777 * 303.09033 * 18 17 16 33 33 H 1.09000 * 109.57656 * 296.63750 * 20 14 4 34 34 H 1.09004 * 109.57547 * 57.01885 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8631 0.6017 0.5147 6 6 3.9322 1.4996 -1.4201 7 1 4.6152 0.7412 -1.7729 8 6 3.5188 2.5041 -2.2693 9 7 3.9567 2.5388 -3.5089 10 14 2.3368 3.8157 -1.6591 11 1 3.1075 4.9516 -1.0926 12 1 1.5049 4.2975 -2.7909 13 1 1.4585 3.2406 -0.6088 14 6 3.8402 2.7459 0.7219 15 1 3.4045 3.6031 0.2087 16 6 3.3318 2.7039 2.1598 17 6 3.4853 4.0676 2.8268 18 6 4.9661 4.3605 3.0826 19 16 5.8314 4.4473 1.4866 20 6 5.3661 2.8711 0.7106 21 1 -0.3634 0.5138 -0.8901 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.6656 3.2453 -4.1065 27 1 2.2793 2.4205 2.1603 28 1 3.9024 1.9638 2.7209 29 1 3.0712 4.8376 2.1757 30 1 2.9471 4.0694 3.7747 31 1 5.0653 5.3125 3.6040 32 1 5.3961 3.5646 3.6905 33 1 5.8045 2.0450 1.2703 34 1 5.7266 2.8500 -0.3179 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260684626.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:54 Heat of formation + Delta-G solvation = -58.641158 kcal Electronic energy + Delta-G solvation = -15256.093204 eV Core-core repulsion = 12893.870762 eV Total energy + Delta-G solvation = -2362.222442 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.04758 -35.73759 -32.98108 -31.48611 -30.13586 -26.98433 -26.55544 -23.21764 -22.00832 -21.05390 -19.97145 -16.82614 -16.37380 -15.49192 -14.83122 -14.68575 -14.27579 -13.74947 -13.65512 -13.04920 -12.78128 -12.60596 -12.44641 -11.90810 -11.76470 -11.42797 -11.12472 -10.93745 -10.86160 -10.60690 -10.35019 -10.22353 -10.07574 -9.58086 -9.24643 -8.73332 -8.54855 -8.08357 -7.25589 -6.12708 -4.22300 2.23800 3.00533 3.40843 3.48755 3.69469 4.52408 4.78176 5.00239 5.09375 5.27505 5.35342 5.54619 5.66569 5.67882 5.79865 5.86285 5.87452 5.99183 6.11485 6.17754 6.25055 6.31658 6.43689 6.51267 6.59609 6.64828 6.78867 6.91164 7.04067 7.59842 8.24184 8.55349 8.87585 9.54224 10.97841 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.023096 B = 0.012735 C = 0.009960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.027862 B = 2198.219658 C = 2810.660112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.062 3.938 3 O -0.389 6.389 4 C 0.189 3.811 5 H 0.028 0.972 6 C -0.549 4.549 7 H 0.072 0.928 8 C 0.092 3.908 9 N -0.890 5.890 10 Si 0.865 3.135 11 H -0.278 1.278 12 H -0.303 1.303 13 H -0.218 1.218 14 C -0.086 4.086 15 H 0.078 0.922 16 C -0.126 4.126 17 C -0.122 4.122 18 C -0.078 4.078 19 S -0.295 6.295 20 C -0.048 4.048 21 H 0.058 0.942 22 H 0.057 0.943 23 H 0.052 0.948 24 H 0.047 0.953 25 H 0.026 0.974 26 H 0.265 0.735 27 H 0.076 0.924 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.308 0.024 11.878 12.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.015 4.015 3 O -0.309 6.309 4 C 0.131 3.869 5 H 0.046 0.954 6 C -0.586 4.586 7 H 0.091 0.909 8 C -0.113 4.113 9 N -0.527 5.527 10 Si 0.694 3.306 11 H -0.205 1.205 12 H -0.231 1.231 13 H -0.142 1.142 14 C -0.106 4.106 15 H 0.096 0.904 16 C -0.163 4.163 17 C -0.161 4.161 18 C -0.227 4.227 19 S -0.068 6.068 20 C -0.196 4.196 21 H 0.077 0.923 22 H 0.076 0.924 23 H 0.071 0.929 24 H 0.065 0.935 25 H 0.045 0.955 26 H 0.074 0.926 27 H 0.095 0.905 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.113 0.887 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.736 1.094 11.338 11.522 hybrid contribution -1.079 -0.436 0.494 1.264 sum -2.815 0.658 11.831 12.179 Atomic orbital electron populations 1.21729 0.95753 1.00776 1.02201 1.22133 0.93699 0.86713 0.98942 1.88125 1.24246 1.23621 1.94943 1.20008 0.78974 0.92206 0.95716 0.95403 1.21272 1.29539 1.13122 0.94695 0.90943 1.24946 0.94579 0.97490 0.94286 1.69941 1.43631 1.33418 1.05675 0.87234 0.82581 0.81367 0.79386 1.20496 1.23081 1.14183 1.21619 0.93361 1.01169 0.94487 0.90449 1.21627 1.02704 0.95833 0.96157 1.21738 0.94343 0.99080 1.00913 1.23361 0.98042 1.04797 0.96461 1.86754 1.67396 1.32592 1.20062 1.23459 0.98490 0.93003 1.04609 0.92305 0.92419 0.92921 0.93511 0.95545 0.92566 0.90504 0.92625 0.91028 0.91577 0.88685 0.90383 0.90754 0.85623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 10.28 37.16 0.38 -1.95 16 2 C 0.06 1.18 6.46 37.16 0.24 1.42 16 3 O -0.39 -8.71 5.96 -35.23 -0.21 -8.92 16 4 C 0.19 4.29 1.83 -27.88 -0.05 4.24 16 5 H 0.03 0.60 7.79 -51.93 -0.40 0.20 16 6 C -0.55 -14.89 8.16 -34.44 -0.28 -15.18 16 7 H 0.07 2.13 8.06 -52.49 -0.42 1.71 16 8 C 0.09 2.62 5.45 -17.82 -0.10 2.52 16 9 N -0.89 -26.99 13.96 55.43 0.77 -26.22 16 10 Si 0.86 22.04 23.91 -169.99 -4.06 17.98 16 11 H -0.28 -7.05 6.87 56.52 0.39 -6.66 16 12 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 13 H -0.22 -5.36 5.30 56.52 0.30 -5.06 16 14 C -0.09 -1.79 1.37 -90.78 -0.12 -1.92 16 15 H 0.08 1.80 3.18 -51.93 -0.17 1.63 16 16 C -0.13 -2.14 4.90 -27.16 -0.13 -2.28 16 17 C -0.12 -1.82 5.75 -26.90 -0.15 -1.97 16 18 C -0.08 -1.12 6.46 37.21 0.24 -0.88 16 19 S -0.30 -5.38 22.33 -107.50 -2.40 -7.78 16 20 C -0.05 -0.95 5.53 37.21 0.21 -0.74 16 21 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 22 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 25 H 0.03 0.45 8.08 -51.93 -0.42 0.03 16 26 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 27 H 0.08 1.35 7.34 -51.93 -0.38 0.96 16 28 H 0.06 0.87 8.08 -51.93 -0.42 0.45 16 29 H 0.07 1.17 8.06 -51.93 -0.42 0.75 16 30 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 31 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 34 H 0.13 2.83 7.10 -51.93 -0.37 2.47 16 LS Contribution 272.75 15.07 4.11 4.11 Total: -1.00 -29.66 272.75 -7.20 -36.85 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -5.63 Total: 0.70 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: 0.23 Total: -16.74 kcal Atomic # 7 Polarization: -26.99 SS G_CDS: 0.77 Total: -26.22 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: -0.21 Total: -8.92 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.06 Total: 17.98 kcal Atomic # 16 Polarization: -5.38 SS G_CDS: -2.40 Total: -7.78 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.66 -7.20 -36.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260684626.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.787 kcal (2) G-P(sol) polarization free energy of solvation -29.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds