Wall clock time and date at job start Mon Mar 30 2020 02:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.46889 * 2 1 4 4 C 1.42905 * 113.99778 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47174 * 330.00433 * 4 3 2 6 6 C 1.50703 * 109.46880 * 90.00138 * 4 3 2 7 7 H 1.07992 * 120.00104 * 239.99654 * 6 4 3 8 8 C 1.37878 * 119.99764 * 60.00247 * 6 4 3 9 9 N 1.31520 * 119.99764 * 179.97438 * 8 6 4 10 10 Si 1.86802 * 120.00310 * 359.97438 * 8 6 4 11 11 H 1.48499 * 109.46980 * 90.00329 * 10 8 6 12 12 H 1.48498 * 109.47179 * 210.00263 * 10 8 6 13 13 H 1.48500 * 109.47181 * 330.00419 * 10 8 6 14 14 C 1.53004 * 109.46773 * 210.00101 * 4 3 2 15 15 H 1.08998 * 109.38941 * 300.19337 * 14 4 3 16 16 C 1.52579 * 109.38950 * 60.00497 * 14 4 3 17 17 C 1.52584 * 110.72162 * 190.81958 * 16 14 4 18 18 C 1.53095 * 109.95776 * 289.32135 * 17 16 14 19 19 S 1.81754 * 108.83954 * 63.02831 * 18 17 16 20 20 C 1.53099 * 109.38649 * 180.49687 * 14 4 3 21 21 H 1.09008 * 109.47201 * 60.00236 * 1 2 3 22 22 H 1.09001 * 109.47296 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47286 * 300.00017 * 1 2 3 24 24 H 1.08997 * 109.47286 * 239.99983 * 2 1 3 25 25 H 1.08997 * 109.46848 * 120.00081 * 2 1 3 26 26 H 0.97001 * 119.99831 * 179.97438 * 9 8 6 27 27 H 1.08998 * 109.22557 * 311.13953 * 16 14 4 28 28 H 1.08996 * 109.23015 * 70.50352 * 16 14 4 29 29 H 1.09004 * 109.39092 * 49.47608 * 17 16 14 30 30 H 1.09007 * 109.38603 * 169.17542 * 17 16 14 31 31 H 1.08997 * 109.57798 * 182.83221 * 18 17 16 32 32 H 1.08994 * 109.57777 * 303.09033 * 18 17 16 33 33 H 1.09000 * 109.57656 * 296.63750 * 20 14 4 34 34 H 1.09004 * 109.57547 * 57.01885 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8631 0.6017 0.5147 6 6 3.9322 1.4996 -1.4201 7 1 4.6152 0.7412 -1.7729 8 6 3.5188 2.5041 -2.2693 9 7 3.9567 2.5388 -3.5089 10 14 2.3368 3.8157 -1.6591 11 1 3.1075 4.9516 -1.0926 12 1 1.5049 4.2975 -2.7909 13 1 1.4585 3.2406 -0.6088 14 6 3.8402 2.7459 0.7219 15 1 3.4045 3.6031 0.2087 16 6 3.3318 2.7039 2.1598 17 6 3.4853 4.0676 2.8268 18 6 4.9661 4.3605 3.0826 19 16 5.8314 4.4473 1.4866 20 6 5.3661 2.8711 0.7106 21 1 -0.3634 0.5138 -0.8901 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.6656 3.2453 -4.1065 27 1 2.2793 2.4205 2.1603 28 1 3.9024 1.9638 2.7209 29 1 3.0712 4.8376 2.1757 30 1 2.9471 4.0694 3.7747 31 1 5.0653 5.3125 3.6040 32 1 5.3961 3.5646 3.6905 33 1 5.8045 2.0450 1.2703 34 1 5.7266 2.8500 -0.3179 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260684626.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:54 Heat of formation + Delta-G solvation = -76.991639 kcal Electronic energy + Delta-G solvation = -15256.888941 eV Core-core repulsion = 12893.870762 eV Total energy + Delta-G solvation = -2363.018179 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.70961 -37.21159 -34.87071 -33.18997 -31.56077 -28.74820 -28.05265 -24.89079 -23.49253 -22.62326 -21.50045 -18.79333 -17.90622 -17.22360 -16.56134 -16.27647 -15.65456 -15.36003 -15.20520 -14.81197 -14.31804 -14.01434 -13.81525 -13.42915 -13.34380 -12.98342 -12.72103 -12.42568 -12.32134 -12.25348 -12.16348 -11.88840 -11.75155 -11.17304 -10.79597 -10.63949 -10.49846 -9.89092 -8.67873 -8.35761 -6.46214 0.88291 1.35646 1.38692 1.63269 1.65691 2.39234 2.96762 3.31046 3.80701 3.88681 4.00309 4.18792 4.30726 4.31575 4.45659 4.56764 4.60689 4.61773 4.69442 4.79712 4.89663 4.94590 5.07888 5.10049 5.17492 5.21363 5.35060 5.38851 5.40060 5.58694 6.09930 6.57935 6.80680 7.34144 8.78802 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.023096 B = 0.012735 C = 0.009960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.027862 B = 2198.219658 C = 2810.660112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.052 3.948 3 O -0.400 6.400 4 C 0.195 3.805 5 H 0.039 0.961 6 C -0.542 4.542 7 H 0.033 0.967 8 C 0.043 3.957 9 N -0.940 5.940 10 Si 0.923 3.077 11 H -0.279 1.279 12 H -0.314 1.314 13 H -0.199 1.199 14 C -0.086 4.086 15 H 0.052 0.948 16 C -0.120 4.120 17 C -0.119 4.119 18 C -0.063 4.063 19 S -0.333 6.333 20 C -0.043 4.043 21 H 0.043 0.957 22 H 0.088 0.912 23 H 0.066 0.934 24 H 0.023 0.977 25 H 0.052 0.948 26 H 0.264 0.736 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.054 0.946 30 H 0.105 0.895 31 H 0.121 0.879 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.645 0.153 15.447 15.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.025 4.025 3 O -0.321 6.321 4 C 0.136 3.864 5 H 0.058 0.942 6 C -0.580 4.580 7 H 0.051 0.949 8 C -0.157 4.157 9 N -0.579 5.579 10 Si 0.751 3.249 11 H -0.207 1.207 12 H -0.243 1.243 13 H -0.122 1.122 14 C -0.106 4.106 15 H 0.070 0.930 16 C -0.157 4.157 17 C -0.158 4.158 18 C -0.211 4.211 19 S -0.106 6.106 20 C -0.191 4.191 21 H 0.062 0.938 22 H 0.107 0.893 23 H 0.085 0.915 24 H 0.042 0.958 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.073 0.927 30 H 0.124 0.876 31 H 0.139 0.861 32 H 0.119 0.881 33 H 0.110 0.890 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.080 1.206 14.930 15.292 hybrid contribution -0.612 -0.587 -0.582 1.029 sum -3.691 0.619 14.347 14.828 Atomic orbital electron populations 1.21721 0.93070 1.02891 1.02141 1.22419 0.95936 0.85055 0.99065 1.88050 1.23293 1.25876 1.94897 1.19874 0.79366 0.94071 0.93052 0.94247 1.21550 1.27946 1.11250 0.97223 0.94905 1.25637 0.96232 0.99576 0.94272 1.70068 1.45994 1.34690 1.07165 0.86355 0.80789 0.79030 0.78745 1.20654 1.24285 1.12180 1.21534 0.93682 0.98451 0.96886 0.92955 1.21569 1.02662 0.97999 0.93518 1.21727 0.94970 0.96945 1.02154 1.23521 0.96988 1.07147 0.93432 1.86880 1.68516 1.31658 1.23526 1.23226 0.98123 0.94794 1.02994 0.93776 0.89305 0.91512 0.95839 0.92962 0.92758 0.90557 0.90600 0.92708 0.87645 0.86097 0.88098 0.88975 0.89738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.05 10.28 71.98 0.74 -3.31 16 2 C 0.05 1.86 6.46 71.98 0.46 2.33 16 3 O -0.40 -17.24 5.96 -148.98 -0.89 -18.13 16 4 C 0.19 8.71 1.83 29.85 0.05 8.77 16 5 H 0.04 1.65 7.79 -2.39 -0.02 1.63 16 6 C -0.54 -30.38 8.16 25.60 0.21 -30.17 16 7 H 0.03 2.04 8.06 -2.91 -0.02 2.02 16 8 C 0.04 2.50 5.45 84.65 0.46 2.96 16 9 N -0.94 -59.62 13.96 21.45 0.30 -59.32 16 10 Si 0.92 46.71 23.91 68.60 1.64 48.35 16 11 H -0.28 -14.04 6.87 99.48 0.68 -13.35 16 12 H -0.31 -16.26 7.11 99.48 0.71 -15.55 16 13 H -0.20 -9.37 5.30 99.48 0.53 -8.84 16 14 C -0.09 -3.42 1.37 -10.90 -0.01 -3.43 16 15 H 0.05 2.37 3.18 -2.39 -0.01 2.37 16 16 C -0.12 -3.62 4.90 30.32 0.15 -3.47 16 17 C -0.12 -3.00 5.75 30.49 0.18 -2.82 16 18 C -0.06 -1.52 6.46 72.01 0.46 -1.06 16 19 S -0.33 -11.59 22.33 -56.49 -1.26 -12.85 16 20 C -0.04 -1.70 5.53 72.02 0.40 -1.30 16 21 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 22 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 23 H 0.07 1.73 8.14 -2.39 -0.02 1.72 16 24 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.05 1.61 8.08 -2.39 -0.02 1.59 16 26 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 27 H 0.08 2.34 7.34 -2.39 -0.02 2.32 16 28 H 0.08 2.00 8.08 -2.39 -0.02 1.98 16 29 H 0.05 1.59 8.06 -2.38 -0.02 1.57 16 30 H 0.11 1.93 8.14 -2.38 -0.02 1.91 16 31 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 34 H 0.08 3.97 7.10 -2.39 -0.02 3.96 16 Total: -1.00 -66.95 272.75 3.74 -63.21 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 0.85 Total: 10.26 kcal Atomic # 6 Polarization: -34.61 SS G_CDS: 3.10 Total: -31.51 kcal Atomic # 7 Polarization: -59.62 SS G_CDS: 0.30 Total: -59.32 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -0.89 Total: -18.13 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 1.64 Total: 48.35 kcal Atomic # 16 Polarization: -11.59 SS G_CDS: -1.26 Total: -12.85 kcal Total: -66.95 3.74 -63.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260684626.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.783 kcal (2) G-P(sol) polarization free energy of solvation -66.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds