Wall clock time and date at job start Mon Mar 30 2020 02:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42903 * 109.46654 * 2 1 4 4 C 1.42901 * 113.99524 * 184.30873 * 3 2 1 5 5 H 1.09004 * 109.47155 * 32.86034 * 4 3 2 6 6 C 1.50699 * 109.47310 * 272.85835 * 4 3 2 7 7 H 1.07999 * 120.00002 * 333.76155 * 6 4 3 8 8 C 1.37881 * 120.00151 * 153.75726 * 6 4 3 9 9 N 1.31513 * 119.99781 * 6.55401 * 8 6 4 10 10 Si 1.86800 * 120.00051 * 186.55686 * 8 6 4 11 11 H 1.48505 * 109.46898 * 179.97438 * 10 8 6 12 12 H 1.48493 * 109.46902 * 299.99662 * 10 8 6 13 13 H 1.48497 * 109.46951 * 59.99957 * 10 8 6 14 14 C 1.53002 * 109.47169 * 152.86006 * 4 3 2 15 15 H 1.08998 * 109.38774 * 180.02562 * 14 4 3 16 16 C 1.52587 * 109.38958 * 299.80185 * 14 4 3 17 17 C 1.52573 * 110.72671 * 190.82257 * 16 14 4 18 18 C 1.53099 * 109.95810 * 289.32332 * 17 16 14 19 19 S 1.81757 * 108.83816 * 63.02570 * 18 17 16 20 20 C 1.53096 * 109.38780 * 60.19519 * 14 4 3 21 21 H 1.08995 * 109.47385 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47044 * 299.99659 * 1 2 3 23 23 H 1.09002 * 109.47252 * 59.99776 * 1 2 3 24 24 H 1.08993 * 109.46696 * 240.00405 * 2 1 3 25 25 H 1.08993 * 109.47206 * 120.00479 * 2 1 3 26 26 H 0.96999 * 120.00156 * 355.15447 * 9 8 6 27 27 H 1.09001 * 109.22581 * 311.14619 * 16 14 4 28 28 H 1.09008 * 109.22502 * 70.54229 * 16 14 4 29 29 H 1.09004 * 109.39434 * 49.47294 * 17 16 14 30 30 H 1.08997 * 109.39003 * 169.17794 * 17 16 14 31 31 H 1.09002 * 109.57739 * 182.82663 * 18 17 16 32 32 H 1.08998 * 109.57875 * 303.21780 * 18 17 16 33 33 H 1.08994 * 109.57853 * 296.63311 * 20 14 4 34 34 H 1.09005 * 109.57271 * 57.02661 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4273 1.4614 -0.0981 5 1 3.8164 0.6441 -0.7054 6 6 4.0329 1.3954 1.2803 7 1 3.4536 1.6987 2.1398 8 6 5.3267 0.9476 1.4442 9 7 6.0754 0.7008 0.3915 10 14 6.0159 0.6914 3.1614 11 1 7.4171 0.2088 3.0654 12 1 5.9844 1.9769 3.9041 13 1 5.1941 -0.3156 3.8794 14 6 3.7879 2.7978 -0.7500 15 1 4.8720 2.8831 -0.8246 16 6 3.1780 2.8607 -2.1473 17 6 3.7318 4.0507 -2.9251 18 6 3.1838 5.3563 -2.3428 19 16 3.7640 5.5234 -0.6284 20 6 3.2449 3.9443 0.1070 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 5.6966 0.7659 -0.4991 27 1 3.4128 1.9409 -2.6832 28 1 2.0958 2.9602 -2.0624 29 1 4.8197 4.0528 -2.8574 30 1 3.4359 3.9687 -3.9710 31 1 3.5431 6.1989 -2.9336 32 1 2.0942 5.3345 -2.3591 33 1 2.1565 3.8942 0.1368 34 1 3.6440 3.8650 1.1182 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260684629.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:55 Heat of formation + Delta-G solvation = -93.701556 kcal Electronic energy + Delta-G solvation = -15031.516936 eV Core-core repulsion = 12667.774161 eV Total energy + Delta-G solvation = -2363.742775 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.108 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.68775 -37.20907 -35.18650 -32.94245 -31.46983 -28.22475 -27.98432 -25.33004 -23.53740 -22.75344 -21.06793 -19.19538 -17.75657 -17.33869 -16.31114 -15.96597 -15.69046 -15.33261 -15.26561 -14.96588 -14.31218 -14.09812 -13.79090 -13.50954 -13.09226 -12.81488 -12.70355 -12.48783 -12.33971 -12.29497 -12.01295 -11.87067 -11.61776 -11.44773 -11.18648 -10.65402 -10.45707 -9.90398 -8.66793 -8.65192 -6.40179 0.90505 1.50134 1.55729 1.64463 1.75793 2.51242 3.07321 3.15546 3.77194 3.85480 4.02912 4.07886 4.19010 4.33919 4.42329 4.48182 4.58300 4.59281 4.66728 4.81783 4.85866 4.88326 5.00494 5.05840 5.07535 5.22432 5.26226 5.32625 5.50808 5.94783 6.00715 6.52639 6.68118 7.41356 8.71101 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.019167 B = 0.011298 C = 0.008326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.526194 B = 2477.701240 C = 3361.991973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.060 3.940 3 O -0.402 6.402 4 C 0.213 3.787 5 H -0.005 1.005 6 C -0.620 4.620 7 H 0.043 0.957 8 C -0.019 4.019 9 N -0.928 5.928 10 Si 1.105 2.895 11 H -0.282 1.282 12 H -0.274 1.274 13 H -0.272 1.272 14 C -0.065 4.065 15 H 0.051 0.949 16 C -0.116 4.116 17 C -0.115 4.115 18 C -0.063 4.063 19 S -0.327 6.327 20 C -0.028 4.028 21 H 0.088 0.912 22 H 0.056 0.944 23 H 0.064 0.936 24 H 0.032 0.968 25 H 0.025 0.975 26 H 0.259 0.741 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.100 0.900 31 H 0.124 0.876 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.005 3.709 -5.399 10.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.017 4.017 3 O -0.322 6.322 4 C 0.155 3.845 5 H 0.013 0.987 6 C -0.658 4.658 7 H 0.062 0.938 8 C -0.219 4.219 9 N -0.565 5.565 10 Si 0.927 3.073 11 H -0.208 1.208 12 H -0.200 1.200 13 H -0.197 1.197 14 C -0.085 4.085 15 H 0.070 0.930 16 C -0.154 4.154 17 C -0.154 4.154 18 C -0.211 4.211 19 S -0.100 6.100 20 C -0.176 4.176 21 H 0.107 0.893 22 H 0.075 0.925 23 H 0.083 0.917 24 H 0.050 0.950 25 H 0.044 0.956 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.119 0.881 31 H 0.142 0.858 32 H 0.111 0.889 33 H 0.095 0.905 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.240 4.359 -4.087 8.639 hybrid contribution -1.488 -1.048 -1.153 2.154 sum -7.727 3.311 -5.240 9.906 Atomic orbital electron populations 1.21690 0.91831 1.03109 1.02603 1.22366 0.96398 0.84433 0.98510 1.87648 1.23373 1.26246 1.94934 1.19744 0.78121 0.92297 0.94349 0.98714 1.22562 1.01570 1.47494 0.94130 0.93843 1.27032 0.94467 0.92718 1.07682 1.70939 1.37712 1.48601 0.99256 0.83080 0.75804 0.77567 0.70833 1.20769 1.19974 1.19725 1.21309 0.98532 0.94589 0.94113 0.93028 1.21515 1.00578 0.98649 0.94647 1.21687 1.00710 0.92514 1.00472 1.23476 1.03705 1.01902 0.91980 1.86656 1.81061 1.27684 1.14625 1.23076 1.02207 0.91297 1.01042 0.89306 0.92462 0.91715 0.95022 0.95649 0.93054 0.92586 0.91486 0.92163 0.88125 0.85811 0.88904 0.90507 0.90030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 10.28 71.98 0.74 -3.11 16 2 C 0.06 2.32 6.49 71.98 0.47 2.79 16 3 O -0.40 -18.12 8.90 -148.98 -1.33 -19.44 16 4 C 0.21 10.57 1.43 29.85 0.04 10.62 16 5 H 0.00 -0.26 6.54 -2.39 -0.02 -0.28 16 6 C -0.62 -34.18 7.26 25.60 0.19 -33.99 16 7 H 0.04 2.46 7.82 -2.91 -0.02 2.44 16 8 C -0.02 -1.08 5.45 84.66 0.46 -0.62 16 9 N -0.93 -55.01 13.63 21.45 0.29 -54.71 16 10 Si 1.10 50.16 29.91 68.60 2.05 52.22 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 12 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 13 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 14 C -0.06 -2.86 1.84 -10.90 -0.02 -2.88 16 15 H 0.05 2.60 7.72 -2.39 -0.02 2.58 16 16 C -0.12 -4.11 4.64 30.32 0.14 -3.96 16 17 C -0.12 -3.26 5.75 30.49 0.18 -3.09 16 18 C -0.06 -1.69 6.45 72.02 0.46 -1.22 16 19 S -0.33 -11.84 22.33 -56.49 -1.26 -13.10 16 20 C -0.03 -1.19 5.33 72.01 0.38 -0.81 16 21 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 22 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 23 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.03 1.19 7.99 -2.39 -0.02 1.18 16 25 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.26 15.38 6.37 -92.71 -0.59 14.79 16 27 H 0.06 2.00 8.09 -2.39 -0.02 1.98 16 28 H 0.07 2.30 7.92 -2.38 -0.02 2.28 16 29 H 0.06 1.89 8.06 -2.38 -0.02 1.87 16 30 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 32 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.08 3.17 7.79 -2.39 -0.02 3.15 16 34 H 0.08 3.91 7.11 -2.39 -0.02 3.89 16 Total: -1.00 -62.14 283.40 4.02 -58.12 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 1.22 Total: 13.21 kcal Atomic # 6 Polarization: -39.33 SS G_CDS: 3.04 Total: -36.29 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: 0.29 Total: -54.71 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -1.33 Total: -19.44 kcal Atomic # 14 Polarization: 50.16 SS G_CDS: 2.05 Total: 52.22 kcal Atomic # 16 Polarization: -11.84 SS G_CDS: -1.26 Total: -13.10 kcal Total: -62.14 4.02 -58.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260684629.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.581 kcal (2) G-P(sol) polarization free energy of solvation -62.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds