Wall clock time and date at job start Mon Mar 30 2020 03:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47509 * 2 1 4 4 N 1.33987 * 126.04167 * 264.69000 * 3 2 1 5 5 H 0.97008 * 125.02455 * 0.22316 * 4 3 2 6 6 N 1.39956 * 109.95633 * 180.25872 * 4 3 2 7 7 C 1.32052 * 108.96103 * 359.97438 * 6 4 3 8 8 C 1.41155 * 134.68579 * 179.97438 * 7 6 4 9 9 C 1.35631 * 119.59800 * 179.97438 * 8 7 6 10 10 C 1.39675 * 121.81929 * 0.05041 * 9 8 7 11 11 C 1.50707 * 119.13984 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.46844 * 269.97658 * 11 10 9 13 13 H 1.07999 * 120.00195 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99642 * 179.97438 * 12 11 10 15 15 N 1.31522 * 119.99990 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00027 * 179.97438 * 14 12 11 17 17 H 1.48508 * 109.46861 * 89.99947 * 16 14 12 18 18 H 1.48493 * 109.47190 * 209.99905 * 16 14 12 19 19 H 1.48503 * 109.47234 * 330.00394 * 16 14 12 20 20 C 1.35659 * 121.72757 * 359.97217 * 10 9 8 21 21 C 1.38245 * 126.05234 * 84.99465 * 3 2 1 22 22 H 1.09002 * 109.47024 * 300.00528 * 1 2 3 23 23 H 1.08995 * 109.46842 * 60.00546 * 1 2 3 24 24 H 1.08996 * 109.47121 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47574 * 239.98814 * 2 1 3 26 26 H 1.09007 * 109.46958 * 119.99790 * 2 1 3 27 27 H 1.08001 * 120.19899 * 0.03190 * 8 7 6 28 28 H 1.08005 * 119.08632 * 180.02562 * 9 8 7 29 29 H 1.09001 * 109.46439 * 29.97290 * 11 10 9 30 30 H 1.08998 * 109.47153 * 149.97115 * 11 10 9 31 31 H 0.97001 * 119.99535 * 179.97438 * 15 14 12 32 32 H 1.07991 * 120.23100 * 180.02562 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3898 2.1306 -1.0788 5 1 2.3620 1.8065 -1.9927 6 7 2.8098 3.4084 -0.6921 7 6 2.7199 3.5105 0.6214 8 6 2.9946 4.5293 1.5590 9 6 2.7844 4.2993 2.8790 10 6 2.3011 3.0746 3.3453 11 6 2.0903 2.8844 4.8254 12 6 3.3520 2.3437 5.4471 13 1 4.2197 2.1560 4.8320 14 6 3.3987 2.0884 6.8012 15 7 2.3423 2.3174 7.5504 16 14 4.9625 1.4175 7.5718 17 1 5.8238 2.5463 8.0069 18 1 4.6148 0.5787 8.7469 19 1 5.6921 0.5941 6.5743 20 6 2.0164 2.0518 2.5009 21 6 2.2117 2.2203 1.1134 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8934 -0.5140 -0.8898 26 1 1.8933 -0.5138 0.8901 27 1 3.3691 5.4864 1.2271 28 1 2.9971 5.0847 3.5892 29 1 1.8413 3.8420 5.2828 30 1 1.2741 2.1806 4.9887 31 1 2.3751 2.1375 8.5030 32 1 1.6434 1.1151 2.8877 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260697673.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:47 Heat of formation + Delta-G solvation = 49.129755 kcal Electronic energy + Delta-G solvation = -15150.714691 eV Core-core repulsion = 12690.014346 eV Total energy + Delta-G solvation = -2460.700345 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.25890 -38.57857 -35.39371 -34.91422 -32.72354 -31.66459 -30.49857 -28.17790 -25.68535 -24.29312 -24.15599 -21.82536 -20.64463 -18.51629 -18.43982 -17.49834 -16.68486 -16.08736 -15.78692 -15.41626 -15.13799 -14.64453 -14.41519 -14.16180 -13.52445 -13.37950 -13.21464 -12.77194 -12.59067 -12.46806 -12.39504 -12.05746 -12.05338 -11.54617 -11.47423 -11.08963 -10.87972 -10.55125 -9.58734 -8.41438 -8.07498 -6.26850 -0.25898 0.94608 1.42467 1.43345 1.50979 1.55177 1.83327 2.43800 3.01581 3.15969 3.38834 3.55032 3.96685 4.13922 4.33547 4.36551 4.51108 4.58604 4.70389 4.79395 4.91352 5.01574 5.09039 5.26411 5.36797 5.41928 5.46835 5.55213 5.63635 5.81906 6.02827 6.16930 6.27576 6.32422 6.66446 6.86149 7.41357 8.94562 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.029797 B = 0.006612 C = 0.006029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.479188 B = 4234.001632 C = 4642.938563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.060 4.060 3 C 0.126 3.874 4 N -0.413 5.413 5 H 0.456 0.544 6 N -0.341 5.341 7 C 0.081 3.919 8 C -0.125 4.125 9 C -0.063 4.063 10 C -0.106 4.106 11 C 0.064 3.936 12 C -0.525 4.525 13 H 0.052 0.948 14 C 0.006 3.994 15 N -0.930 5.930 16 Si 0.961 3.039 17 H -0.273 1.273 18 H -0.279 1.279 19 H -0.267 1.267 20 C -0.057 4.057 21 C -0.219 4.219 22 H 0.042 0.958 23 H 0.061 0.939 24 H 0.088 0.912 25 H 0.113 0.887 26 H 0.094 0.906 27 H 0.142 0.858 28 H 0.127 0.873 29 H 0.004 0.996 30 H 0.004 0.996 31 H 0.265 0.735 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.883 -4.809 -16.531 17.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.099 4.099 3 C -0.014 4.014 4 N -0.116 5.116 5 H 0.303 0.697 6 N -0.170 5.170 7 C -0.071 4.071 8 C -0.146 4.146 9 C -0.085 4.085 10 C -0.107 4.107 11 C 0.027 3.973 12 C -0.563 4.563 13 H 0.071 0.929 14 C -0.192 4.192 15 N -0.571 5.571 16 Si 0.786 3.214 17 H -0.199 1.199 18 H -0.205 1.205 19 H -0.192 1.192 20 C -0.077 4.077 21 C -0.229 4.229 22 H 0.062 0.938 23 H 0.080 0.920 24 H 0.107 0.893 25 H 0.132 0.868 26 H 0.112 0.888 27 H 0.160 0.840 28 H 0.145 0.855 29 H 0.022 0.978 30 H 0.022 0.978 31 H 0.073 0.927 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.601 -4.158 -17.490 18.049 hybrid contribution 0.420 -0.532 1.196 1.375 sum -1.181 -4.690 -16.294 16.997 Atomic orbital electron populations 1.21750 0.92906 1.03622 1.02061 1.20470 0.97224 0.86209 1.05956 1.21627 0.97457 0.96090 0.86237 1.46138 1.46480 1.09387 1.09571 0.69652 1.77486 1.29402 0.98294 1.11817 1.21113 0.98893 0.95665 0.91396 1.19963 1.05813 0.98151 0.90659 1.20752 0.95844 0.96819 0.95121 1.19765 1.00178 0.94215 0.96562 1.18045 0.95896 0.95716 0.87680 1.21428 0.98762 1.42898 0.93218 0.92950 1.25875 0.99632 0.95927 0.97791 1.70082 1.30867 1.49837 1.06288 0.85506 0.79398 0.78544 0.77970 1.19855 1.20473 1.19155 1.20047 0.99478 0.98281 0.89938 1.19580 1.13580 0.95382 0.94342 0.93835 0.92005 0.89301 0.86836 0.88802 0.83993 0.85521 0.97805 0.97770 0.92658 0.86309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.89 71.98 0.71 -1.57 16 2 C -0.06 -1.01 6.49 29.85 0.19 -0.81 16 3 C 0.13 3.26 6.53 42.23 0.28 3.54 16 4 N -0.41 -9.96 7.18 -46.82 -0.34 -10.30 16 5 H 0.46 6.64 8.96 -213.40 -1.91 4.73 16 6 N -0.34 -11.28 12.70 -48.70 -0.62 -11.90 16 7 C 0.08 3.01 7.49 42.16 0.32 3.33 16 8 C -0.12 -4.60 10.08 22.38 0.23 -4.37 16 9 C -0.06 -2.58 9.51 22.01 0.21 -2.37 16 10 C -0.11 -4.81 5.03 -20.11 -0.10 -4.91 16 11 C 0.06 3.42 5.05 29.10 0.15 3.57 16 12 C -0.53 -30.14 9.09 25.60 0.23 -29.91 16 13 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 14 C 0.01 0.32 5.46 84.65 0.46 0.79 16 15 N -0.93 -56.08 13.29 21.45 0.28 -55.79 16 16 Si 0.96 44.43 29.54 68.60 2.03 46.46 16 17 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 18 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 20 C -0.06 -2.33 9.66 22.38 0.22 -2.11 16 21 C -0.22 -7.84 6.26 -20.23 -0.13 -7.97 16 22 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 27 H 0.14 4.42 8.06 -2.91 -0.02 4.40 16 28 H 0.13 4.93 8.06 -2.91 -0.02 4.91 16 29 H 0.00 0.21 8.07 -2.39 -0.02 0.19 16 30 H 0.00 0.23 8.06 -2.39 -0.02 0.21 16 31 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 32 H 0.12 4.64 8.06 -2.92 -0.02 4.62 16 Total: -1.00 -70.58 280.61 3.33 -67.25 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -0.79 Total: 7.09 kcal Atomic # 6 Polarization: -45.57 SS G_CDS: 2.76 Total: -42.80 kcal Atomic # 7 Polarization: -77.32 SS G_CDS: -0.67 Total: -77.99 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -70.58 3.33 -67.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260697673.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.381 kcal (2) G-P(sol) polarization free energy of solvation -70.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds