Wall clock time and date at job start Mon Mar 30 2020 03:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.47121 * 2 1 4 4 N 1.33986 * 126.04493 * 264.97522 * 3 2 1 5 5 H 0.97001 * 125.02597 * 0.02562 * 4 3 2 6 6 N 1.39962 * 109.95760 * 180.02562 * 4 3 2 7 7 C 1.32061 * 108.95663 * 0.02562 * 6 4 3 8 8 C 1.38240 * 126.04726 * 84.99795 * 3 2 1 9 9 C 1.41127 * 134.81773 * 359.95527 * 8 3 2 10 10 C 1.35653 * 119.53992 * 180.02562 * 9 8 3 11 11 C 1.39689 * 121.72234 * 0.02562 * 10 9 8 12 12 C 1.35630 * 121.81588 * 0.26177 * 11 10 9 13 13 C 1.50707 * 120.20015 * 179.69517 * 12 11 10 14 14 C 1.50700 * 109.46956 * 264.99533 * 13 12 11 15 15 H 1.07990 * 120.00237 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99610 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00360 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99887 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47181 * 90.00178 * 18 16 14 20 20 H 1.48498 * 109.47215 * 209.99915 * 18 16 14 21 21 H 1.48493 * 109.47070 * 329.99809 * 18 16 14 22 22 H 1.08999 * 109.47006 * 300.00440 * 1 2 3 23 23 H 1.09004 * 109.46890 * 60.00048 * 1 2 3 24 24 H 1.09000 * 109.46958 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47077 * 240.00058 * 2 1 3 26 26 H 1.08996 * 109.47191 * 119.99876 * 2 1 3 27 27 H 1.08000 * 120.23028 * 0.05008 * 9 8 3 28 28 H 1.07996 * 119.14126 * 180.02562 * 10 9 8 29 29 H 1.08002 * 119.08760 * 179.97438 * 11 10 9 30 30 H 1.09000 * 109.47005 * 24.99816 * 13 12 11 31 31 H 1.08999 * 109.46882 * 144.99462 * 13 12 11 32 32 H 0.96995 * 120.00521 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.3846 2.1325 -1.0792 5 1 2.3552 1.8092 -1.9932 6 7 2.8014 3.4116 -0.6928 7 6 2.7154 3.5121 0.6212 8 6 2.2116 2.2203 1.1135 9 6 2.0217 2.0498 2.5014 10 6 2.3048 3.0730 3.3459 11 6 2.7819 4.3001 2.8790 12 6 2.9818 4.5337 1.5580 13 6 3.4915 5.8739 1.0939 14 6 2.3266 6.7462 0.7025 15 1 1.3182 6.3683 0.7823 16 6 2.5484 8.0273 0.2435 17 7 3.7764 8.4878 0.1468 18 14 1.1045 9.1089 -0.2409 19 1 0.6439 9.8790 0.9424 20 1 1.5271 10.0494 -1.3096 21 1 -0.0054 8.2583 -0.7406 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6539 1.1111 2.8887 28 1 2.1574 2.9354 4.4069 29 1 2.9931 5.0859 3.5892 30 1 4.0474 6.3507 1.9012 31 1 4.1467 5.7354 0.2339 32 1 3.9325 9.3892 -0.1757 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260702446.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:49 Heat of formation + Delta-G solvation = 70.935437 kcal Electronic energy + Delta-G solvation = -15299.101323 eV Core-core repulsion = 12839.346544 eV Total energy + Delta-G solvation = -2459.754780 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.84750 -36.86085 -34.18061 -33.19252 -31.24917 -30.24842 -28.38895 -26.63999 -24.10306 -23.32545 -22.13723 -21.06193 -18.41754 -17.11378 -16.33032 -16.19283 -15.23463 -14.59223 -14.45094 -14.08246 -13.85601 -13.37419 -12.59488 -12.43235 -12.16118 -11.79968 -11.54119 -11.30761 -11.24864 -10.96540 -10.88761 -10.57453 -10.35159 -10.04817 -9.66317 -9.19575 -9.10316 -8.30638 -8.10225 -6.82137 -5.91528 -3.94416 1.22337 2.45146 3.00224 3.11947 3.37135 3.42516 3.47916 4.46028 4.58932 4.63301 4.81396 4.91808 5.13264 5.34328 5.42553 5.52805 5.61445 5.66490 5.75426 5.98582 6.04939 6.08218 6.32000 6.39452 6.89129 7.06637 7.11193 7.32468 7.51511 7.55936 7.72131 7.93654 8.03557 8.22064 8.45500 9.09071 9.67483 11.17820 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.030235 B = 0.007178 C = 0.006589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.849243 B = 3899.846804 C = 4248.592490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.055 4.055 3 C 0.080 3.920 4 N -0.436 5.436 5 H 0.434 0.566 6 N -0.276 5.276 7 C 0.115 3.885 8 C -0.192 4.192 9 C -0.091 4.091 10 C -0.127 4.127 11 C -0.126 4.126 12 C -0.006 4.006 13 C 0.052 3.948 14 C -0.500 4.500 15 H 0.054 0.946 16 C 0.058 3.942 17 N -0.896 5.896 18 Si 0.894 3.106 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.275 1.275 22 H 0.063 0.937 23 H 0.054 0.946 24 H 0.062 0.938 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.110 0.890 28 H 0.112 0.888 29 H 0.121 0.879 30 H 0.030 0.970 31 H 0.032 0.968 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.477 -17.062 1.435 17.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.094 4.094 3 C -0.057 4.057 4 N -0.137 5.137 5 H 0.277 0.723 6 N -0.102 5.102 7 C -0.040 4.040 8 C -0.201 4.201 9 C -0.111 4.111 10 C -0.146 4.146 11 C -0.148 4.148 12 C -0.009 4.009 13 C 0.015 3.985 14 C -0.539 4.539 15 H 0.072 0.928 16 C -0.143 4.143 17 N -0.535 5.535 18 Si 0.721 3.279 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.200 1.200 22 H 0.083 0.917 23 H 0.073 0.927 24 H 0.081 0.919 25 H 0.092 0.908 26 H 0.108 0.892 27 H 0.128 0.872 28 H 0.130 0.870 29 H 0.139 0.861 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.038 -16.245 0.266 16.742 hybrid contribution -1.022 0.137 -0.145 1.041 sum -5.059 -16.108 0.121 16.884 Atomic orbital electron populations 1.21766 0.94031 1.01892 1.02916 1.20158 0.96463 0.89169 1.03618 1.20977 1.02020 0.94960 0.87740 1.46365 1.48185 1.10693 1.08464 0.72277 1.77893 1.24995 0.94326 1.13020 1.20926 0.98216 0.94128 0.90704 1.19322 1.12209 0.94640 0.93978 1.19901 1.02437 0.98600 0.90207 1.20491 1.01596 0.93760 0.98758 1.20458 1.02405 0.96884 0.95091 1.19646 0.95809 0.94833 0.90582 1.18302 0.96543 0.86454 0.97151 1.20992 0.92505 0.97366 1.43000 0.92777 1.24969 0.95642 0.97906 0.95775 1.69956 1.19262 1.17123 1.47194 0.86564 0.82762 0.80315 0.78216 1.20613 1.21230 1.20002 0.91741 0.92658 0.91933 0.90841 0.89244 0.87174 0.87023 0.86072 0.95191 0.94991 0.93000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.89 37.16 0.37 -0.95 16 2 C -0.05 -0.52 6.49 -27.88 -0.18 -0.70 16 3 C 0.08 1.18 6.53 -81.65 -0.53 0.64 16 4 N -0.44 -6.95 7.18 33.85 0.24 -6.71 16 5 H 0.43 5.07 8.96 -182.70 -1.64 3.43 16 6 N -0.28 -6.08 12.70 33.26 0.42 -5.65 16 7 C 0.11 2.58 7.21 -83.05 -0.60 1.99 16 8 C -0.19 -3.50 6.26 -105.19 -0.66 -4.16 16 9 C -0.09 -1.48 10.09 -39.41 -0.40 -1.88 16 10 C -0.13 -2.14 9.90 -39.96 -0.40 -2.53 16 11 C -0.13 -2.56 9.52 -39.97 -0.38 -2.94 16 12 C -0.01 -0.14 5.08 -104.45 -0.53 -0.67 16 13 C 0.05 1.44 5.12 -29.03 -0.15 1.30 16 14 C -0.50 -14.85 9.09 -34.44 -0.31 -15.16 16 15 H 0.05 1.62 7.74 -52.49 -0.41 1.21 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 17 N -0.90 -27.57 13.29 55.43 0.74 -26.83 16 18 Si 0.89 22.57 29.54 -169.99 -5.02 17.55 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 28 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 29 H 0.12 2.33 8.03 -52.49 -0.42 1.91 16 30 H 0.03 0.84 8.03 -51.93 -0.42 0.42 16 31 H 0.03 0.95 8.13 -51.93 -0.42 0.53 16 32 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 280.70 15.07 4.23 4.23 Total: -1.00 -34.39 280.70 -8.65 -43.04 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -5.40 Total: -2.18 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: -3.87 Total: -23.45 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 1.40 Total: -39.19 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -34.39 -8.65 -43.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260702446.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.976 kcal (2) G-P(sol) polarization free energy of solvation -34.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds