Wall clock time and date at job start Mon Mar 30 2020 03:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37897 * 120.15282 * 2 1 4 4 C 1.38733 * 120.44810 * 180.02562 * 3 2 1 5 5 C 1.36634 * 120.67337 * 359.97180 * 4 3 2 6 6 C 1.39712 * 119.88292 * 0.02562 * 5 4 3 7 7 N 1.35792 * 133.60252 * 180.32278 * 6 5 4 8 8 C 1.30108 * 109.64086 * 180.12387 * 7 6 5 9 9 C 1.50700 * 124.94482 * 179.83097 * 8 7 6 10 10 C 1.50702 * 109.47152 * 269.70009 * 9 8 7 11 11 H 1.07993 * 120.00229 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99693 * 179.72286 * 10 9 8 13 13 N 1.31511 * 119.99654 * 180.27417 * 12 10 9 14 14 Si 1.86800 * 120.00098 * 0.27877 * 12 10 9 15 15 H 1.48500 * 109.47272 * 90.00073 * 14 12 10 16 16 H 1.48503 * 109.46823 * 209.99730 * 14 12 10 17 17 H 1.48498 * 109.47144 * 329.99728 * 14 12 10 18 18 N 1.36041 * 110.11003 * 359.56982 * 8 7 6 19 19 C 1.46497 * 126.35077 * 180.24156 * 18 8 7 20 20 C 1.38057 * 107.30356 * 0.26300 * 18 8 7 21 21 H 1.08993 * 109.47121 * 263.44673 * 1 2 3 22 22 H 1.08993 * 109.47146 * 23.44995 * 1 2 3 23 23 H 1.09004 * 109.47016 * 143.44975 * 1 2 3 24 24 H 1.07999 * 119.77343 * 0.02781 * 3 2 1 25 25 H 1.08000 * 119.66105 * 180.02562 * 4 3 2 26 26 H 1.07999 * 120.06602 * 180.02562 * 5 4 3 27 27 H 1.09002 * 109.46769 * 149.70073 * 9 8 7 28 28 H 1.08997 * 109.47129 * 29.70301 * 9 8 7 29 29 H 0.97011 * 119.99755 * 180.02562 * 13 12 10 30 30 H 1.08999 * 109.46918 * 96.44196 * 19 18 8 31 31 H 1.08999 * 109.47656 * 216.44237 * 19 18 8 32 32 H 1.09007 * 109.47271 * 336.44239 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1997 1.1924 0.0000 4 6 3.5870 1.1995 -0.0005 5 6 4.2901 0.0280 -0.0005 6 6 3.6096 -1.1922 -0.0004 7 7 4.0122 -2.4891 0.0051 8 6 2.9717 -3.2701 -0.0005 9 6 3.0228 -4.7762 -0.0005 10 6 3.0399 -5.2782 -1.4214 11 1 3.0164 -4.5768 -2.2422 12 6 3.0917 -6.6328 -1.6733 13 7 3.1120 -7.0706 -2.9132 14 14 3.1329 -7.8460 -0.2535 15 1 1.7447 -8.2202 0.1184 16 1 3.8804 -9.0620 -0.6630 17 1 3.8062 -7.2203 0.9129 18 7 1.8307 -2.5292 -0.0004 19 6 0.4599 -3.0458 -0.0008 20 6 2.2042 -1.2001 -0.0004 21 1 -0.3633 -0.1173 1.0209 22 1 -0.3633 0.9427 -0.4089 23 1 -0.3633 -0.8256 -0.6120 24 1 1.6585 2.1270 0.0005 25 1 4.1166 2.1408 -0.0001 26 1 5.3700 0.0450 -0.0005 27 1 2.1457 -5.1695 0.5133 28 1 3.9246 -5.1091 0.5133 29 1 3.1480 -8.0237 -3.0905 30 1 0.0791 -3.0664 1.0203 31 1 -0.1716 -2.4002 -0.6112 32 1 0.4521 -4.0554 -0.4119 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260725440.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:32 Heat of formation + Delta-G solvation = 44.127201 kcal Electronic energy + Delta-G solvation = -15513.130363 eV Core-core repulsion = 13052.213091 eV Total energy + Delta-G solvation = -2460.917272 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.07045 -38.54621 -35.60711 -35.31417 -32.68118 -32.54284 -29.34399 -28.81793 -26.72106 -25.27277 -23.12858 -21.95511 -20.67129 -19.12831 -18.20004 -17.58853 -16.79841 -16.53694 -15.95084 -15.29733 -14.87023 -14.46857 -14.31530 -14.21512 -14.16003 -13.97432 -13.55900 -13.05341 -12.79020 -12.49635 -12.42329 -12.21834 -12.07614 -11.82259 -11.66083 -11.14208 -10.84344 -10.79338 -9.11125 -8.83474 -8.35526 -6.44868 0.07430 0.64706 1.36322 1.41109 1.52356 1.78960 1.90970 2.32271 2.95352 2.97867 3.40268 3.68647 3.85816 4.05020 4.12210 4.32162 4.41884 4.48733 4.52472 4.61613 4.77642 4.84473 4.86661 4.89322 5.04268 5.18004 5.31520 5.39379 5.60416 5.64140 5.71923 6.08237 6.10572 6.31724 6.58870 7.08712 7.18342 8.81008 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.039559 B = 0.007099 C = 0.006554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.625082 B = 3943.301526 C = 4271.108828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.083 4.083 3 C -0.113 4.113 4 C -0.116 4.116 5 C -0.101 4.101 6 C 0.008 3.992 7 N -0.552 5.552 8 C 0.308 3.692 9 C 0.065 3.935 10 C -0.526 4.526 11 H 0.019 0.981 12 C 0.018 3.982 13 N -0.942 5.942 14 Si 0.952 3.048 15 H -0.251 1.251 16 H -0.282 1.282 17 H -0.247 1.247 18 N -0.490 5.490 19 C 0.066 3.934 20 C 0.018 3.982 21 H 0.081 0.919 22 H 0.094 0.906 23 H 0.062 0.938 24 H 0.167 0.833 25 H 0.162 0.838 26 H 0.126 0.874 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.272 0.728 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.939 13.992 9.341 18.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.086 4.086 3 C -0.132 4.132 4 C -0.136 4.136 5 C -0.121 4.121 6 C -0.111 4.111 7 N -0.272 5.272 8 C 0.043 3.957 9 C 0.026 3.974 10 C -0.565 4.565 11 H 0.037 0.963 12 C -0.180 4.180 13 N -0.581 5.581 14 Si 0.774 3.226 15 H -0.175 1.175 16 H -0.207 1.207 17 H -0.170 1.170 18 N -0.179 5.179 19 C -0.074 4.074 20 C -0.091 4.091 21 H 0.100 0.900 22 H 0.113 0.887 23 H 0.081 0.919 24 H 0.184 0.816 25 H 0.180 0.820 26 H 0.144 0.856 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.115 0.885 31 H 0.122 0.878 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.260 13.538 9.241 17.927 hybrid contribution -0.239 -0.841 -0.208 0.898 sum -7.499 12.697 9.033 17.293 Atomic orbital electron populations 1.20965 0.88825 1.04110 1.03072 1.19282 0.97344 0.88978 1.02952 1.21199 0.94089 0.97081 1.00864 1.20968 0.94573 0.97540 1.00503 1.20230 1.00164 0.89300 1.02389 1.19787 0.91908 0.92716 1.06681 1.70388 1.29823 1.01240 1.25786 1.24019 0.80536 0.96467 0.94672 1.18245 0.99622 0.82160 0.97363 1.20773 1.52882 0.92376 0.90436 0.96298 1.25919 0.93159 1.00076 0.98893 1.70043 1.50859 1.15631 1.21584 0.85636 0.80027 0.77713 0.79242 1.17485 1.20718 1.17046 1.45340 1.08395 1.04303 1.59823 1.22433 0.78416 1.01810 1.04751 1.19195 0.95353 0.85772 1.08765 0.90041 0.88683 0.91929 0.81580 0.82036 0.85643 0.92119 0.93158 0.91922 0.88488 0.87844 0.89565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.19 9.41 71.24 0.67 -1.52 16 2 C -0.08 -2.32 5.89 -19.81 -0.12 -2.44 16 3 C -0.11 -2.61 9.66 22.31 0.22 -2.40 16 4 C -0.12 -2.90 9.96 22.01 0.22 -2.68 16 5 C -0.10 -3.46 10.05 22.25 0.22 -3.24 16 6 C 0.01 0.33 7.23 39.45 0.29 0.61 16 7 N -0.55 -27.73 11.27 -179.95 -2.03 -29.76 16 8 C 0.31 14.74 7.04 137.92 0.97 15.72 16 9 C 0.07 3.17 4.08 29.10 0.12 3.29 16 10 C -0.53 -30.74 9.65 25.60 0.25 -30.50 16 11 H 0.02 1.27 7.98 -2.91 -0.02 1.24 16 12 C 0.02 1.03 5.47 84.66 0.46 1.50 16 13 N -0.94 -58.24 13.96 21.45 0.30 -57.94 16 14 Si 0.95 42.08 27.47 68.60 1.88 43.96 16 15 H -0.25 -10.12 7.11 99.48 0.71 -9.41 16 16 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 17 H -0.25 -10.25 6.54 99.48 0.65 -9.60 16 18 N -0.49 -19.46 3.21 -528.84 -1.70 -21.16 16 19 C 0.07 1.94 10.19 127.77 1.30 3.25 16 20 C 0.02 0.69 6.78 38.86 0.26 0.95 16 21 H 0.08 1.35 8.14 -2.39 -0.02 1.34 16 22 H 0.09 1.32 8.04 -2.39 -0.02 1.30 16 23 H 0.06 1.26 5.23 -2.38 -0.01 1.25 16 24 H 0.17 2.38 8.06 -2.91 -0.02 2.36 16 25 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 26 H 0.13 4.00 8.06 -2.91 -0.02 3.98 16 27 H 0.06 2.58 6.94 -2.39 -0.02 2.57 16 28 H 0.05 2.48 7.19 -2.39 -0.02 2.46 16 29 H 0.27 15.49 8.31 -92.70 -0.77 14.72 16 30 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.10 2.50 5.37 -2.39 -0.01 2.49 16 32 H 0.09 2.78 7.32 -2.38 -0.02 2.76 16 Total: -1.00 -76.04 268.90 4.39 -71.65 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: 1.07 Total: 10.69 kcal Atomic # 6 Polarization: -22.32 SS G_CDS: 4.86 Total: -17.46 kcal Atomic # 7 Polarization: -105.43 SS G_CDS: -3.42 Total: -108.85 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 1.88 Total: 43.96 kcal Total: -76.04 4.39 -71.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260725440.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.782 kcal (2) G-P(sol) polarization free energy of solvation -76.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds