Wall clock time and date at job start Mon Mar 30 2020 03:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38969 * 119.58876 * 2 1 4 4 C 1.36464 * 120.62792 * 180.30867 * 3 2 1 5 5 C 1.39953 * 119.63421 * 359.40529 * 4 3 2 6 6 C 1.45927 * 134.02942 * 180.28375 * 5 4 3 7 7 C 1.50706 * 126.10770 * 0.03386 * 6 5 4 8 8 C 1.50692 * 109.46946 * 90.00263 * 7 6 5 9 9 H 1.07999 * 120.00248 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99946 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99554 * 359.97438 * 10 8 7 12 12 Si 1.86793 * 120.00242 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46962 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47148 * 119.99850 * 12 10 8 15 15 H 1.48494 * 109.47470 * 239.99882 * 12 10 8 16 16 N 1.30237 * 107.78420 * 180.02562 * 6 5 4 17 17 N 1.39872 * 110.08761 * 359.97438 * 16 6 5 18 18 C 1.46497 * 125.46593 * 179.97438 * 17 16 6 19 19 C 1.37041 * 109.07856 * 0.02562 * 17 16 6 20 20 C 1.36587 * 119.59709 * 179.69429 * 2 1 3 21 21 H 1.08999 * 109.46928 * 270.30401 * 1 2 3 22 22 H 1.08995 * 109.47435 * 30.31331 * 1 2 3 23 23 H 1.09003 * 109.46719 * 150.31240 * 1 2 3 24 24 H 1.08000 * 119.68787 * 359.97438 * 3 2 1 25 25 H 1.08002 * 120.18642 * 179.68707 * 4 3 2 26 26 H 1.09003 * 109.47025 * 210.00533 * 7 6 5 27 27 H 1.08998 * 109.46950 * 330.00213 * 7 6 5 28 28 H 0.97005 * 119.99992 * 180.02562 * 11 10 8 29 29 H 1.08994 * 109.47192 * 89.97378 * 18 17 16 30 30 H 1.09003 * 109.47694 * 209.98163 * 18 17 16 31 31 H 1.09002 * 109.47138 * 329.97502 * 18 17 16 32 32 H 1.08005 * 120.07390 * 359.97311 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1932 1.2085 0.0000 4 6 3.5576 1.2332 -0.0063 5 6 4.2716 0.0295 -0.0002 6 6 5.6914 -0.3075 0.0012 7 6 6.8367 0.6720 -0.0035 8 6 7.2186 1.0050 1.4157 9 1 6.6857 0.5523 2.2388 10 6 8.2485 1.8876 1.6635 11 7 8.8979 2.4384 0.6612 12 14 8.7215 2.3009 3.4227 13 1 7.8435 1.5549 4.3596 14 1 10.1367 1.9173 3.6580 15 1 8.5600 3.7596 3.6491 16 7 5.7920 -1.6060 0.0073 17 7 4.5194 -2.1864 0.0108 18 6 4.2412 -3.6247 0.0174 19 6 3.5744 -1.1939 0.0061 20 6 2.1816 -1.1876 0.0063 21 1 -0.3633 0.0055 1.0276 22 1 -0.3634 0.8871 -0.5187 23 1 -0.3633 -0.8928 -0.5090 24 1 1.6414 2.1369 -0.0004 25 1 4.0836 2.1765 -0.0114 26 1 7.6912 0.2294 -0.5154 27 1 6.5343 1.5821 -0.5214 28 1 9.6227 3.0591 0.8355 29 1 4.1734 -3.9770 1.0466 30 1 3.2978 -3.8147 -0.4946 31 1 5.0454 -4.1527 -0.4952 32 1 1.6362 -2.1199 0.0117 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260739061.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:50 Heat of formation + Delta-G solvation = 71.800200 kcal Electronic energy + Delta-G solvation = -15245.370295 eV Core-core repulsion = 12785.653014 eV Total energy + Delta-G solvation = -2459.717281 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.66046 -37.18336 -34.01380 -32.55291 -31.38786 -29.87796 -28.82890 -26.36657 -25.46092 -23.14116 -21.88345 -20.75908 -18.83048 -16.48100 -16.32633 -16.09621 -14.96125 -14.76768 -14.50128 -13.64650 -13.53958 -13.49411 -12.66759 -12.61684 -12.36691 -12.11950 -11.90753 -11.62181 -11.29161 -10.94069 -10.75457 -10.69136 -10.55471 -10.02830 -9.71057 -9.58555 -9.03380 -8.42919 -7.97432 -7.26436 -6.05439 -4.08461 1.45350 1.96956 2.98740 3.24378 3.31035 3.38795 3.45402 4.23872 4.46694 4.88507 4.94057 5.13133 5.28339 5.33864 5.41411 5.43605 5.59705 5.64450 5.65554 5.74058 5.86756 5.94193 6.27115 6.29029 6.47699 6.80984 6.95478 7.21226 7.31780 7.51329 7.52537 7.62081 7.90423 8.26361 8.50508 8.94315 9.54758 11.04855 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.027664 B = 0.007291 C = 0.006364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.899055 B = 3839.485258 C = 4398.666034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.046 4.046 3 C -0.178 4.178 4 C -0.017 4.017 5 C -0.175 4.175 6 C 0.153 3.847 7 C 0.088 3.912 8 C -0.508 4.508 9 H 0.057 0.943 10 C 0.061 3.939 11 N -0.893 5.893 12 Si 0.898 3.102 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.282 1.282 16 N -0.277 5.277 17 N -0.428 5.428 18 C 0.119 3.881 19 C 0.128 3.872 20 C -0.156 4.156 21 H 0.068 0.932 22 H 0.066 0.934 23 H 0.062 0.938 24 H 0.120 0.880 25 H 0.131 0.869 26 H 0.041 0.959 27 H 0.044 0.956 28 H 0.263 0.737 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.471 -5.898 -2.025 15.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.049 4.049 3 C -0.198 4.198 4 C -0.038 4.038 5 C -0.183 4.183 6 C -0.024 4.024 7 C 0.049 3.951 8 C -0.547 4.547 9 H 0.075 0.925 10 C -0.141 4.141 11 N -0.532 5.532 12 Si 0.725 3.275 13 H -0.197 1.197 14 H -0.209 1.209 15 H -0.208 1.208 16 N -0.089 5.089 17 N -0.214 5.214 18 C -0.023 4.023 19 C 0.012 3.988 20 C -0.179 4.179 21 H 0.087 0.913 22 H 0.085 0.915 23 H 0.081 0.919 24 H 0.138 0.862 25 H 0.149 0.851 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -13.544 -7.018 -2.069 15.394 hybrid contribution -0.229 0.689 1.013 1.246 sum -13.773 -6.329 -1.056 15.194 Atomic orbital electron populations 1.20769 0.91416 1.02400 1.02085 1.19326 0.95445 0.92565 0.97520 1.20426 0.93894 0.97056 1.08407 1.20479 0.93284 0.96929 0.93083 1.20028 0.93238 0.93160 1.11923 1.24701 0.94127 0.91420 0.92174 1.17918 0.88174 0.90391 0.98591 1.20954 1.16853 1.25870 0.91051 0.92456 1.24951 0.95942 0.95795 0.97400 1.69958 1.22556 1.30132 1.30553 0.86437 0.78365 0.78122 0.84562 1.19737 1.20874 1.20834 1.76738 0.99513 1.09887 1.22731 1.48182 1.02079 1.04810 1.66374 1.21516 1.01817 0.76889 1.02118 1.18847 0.91418 0.89235 0.99274 1.19450 0.89680 0.97962 1.10764 0.91323 0.91533 0.91944 0.86228 0.85100 0.94107 0.93763 0.92765 0.92137 0.90748 0.89989 0.86746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 9.98 36.01 0.36 -0.75 16 2 C -0.05 -0.66 5.85 -104.95 -0.61 -1.27 16 3 C -0.18 -2.74 9.61 -39.95 -0.38 -3.12 16 4 C -0.02 -0.32 10.07 -39.58 -0.40 -0.72 16 5 C -0.18 -3.76 6.33 -105.20 -0.67 -4.42 16 6 C 0.15 3.70 6.62 -80.19 -0.53 3.17 16 7 C 0.09 2.34 5.57 -29.04 -0.16 2.18 16 8 C -0.51 -14.50 9.09 -34.44 -0.31 -14.81 16 9 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 10 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 11 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 12 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 13 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 16 N -0.28 -6.48 12.40 34.84 0.43 -6.05 16 17 N -0.43 -8.32 4.05 -65.47 -0.27 -8.58 16 18 C 0.12 1.60 11.40 59.85 0.68 2.28 16 19 C 0.13 2.46 6.87 -84.17 -0.58 1.88 16 20 C -0.16 -2.43 9.58 -39.79 -0.38 -2.81 16 21 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 23 H 0.06 0.55 8.07 -51.93 -0.42 0.13 16 24 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 25 H 0.13 2.36 8.06 -52.49 -0.42 1.93 16 26 H 0.04 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.04 1.18 8.14 -51.93 -0.42 0.75 16 28 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.11 1.45 8.06 -52.48 -0.42 1.02 16 LS Contribution 282.24 15.07 4.25 4.25 Total: -1.00 -32.13 282.24 -7.13 -39.26 By element: Atomic # 1 Polarization: 0.81 SS G_CDS: -4.18 Total: -3.37 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: -3.08 Total: -16.77 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: 0.90 Total: -40.08 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -32.13 -7.13 -39.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260739061.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.064 kcal (2) G-P(sol) polarization free energy of solvation -32.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds